Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0763G025 Amborella trichopoda HOM05D004576 ORTHO05D005321 2.1e-217 758.8 405 100.0
GSVIVG01038559001 Vitis vinifera HOM05D004576 ORTHO05D005321 5.6e-162 574.7 406 72.9
Rhsim09G0206100 Rhododendron simsii HOM05D004576 ORTHO05D005321 4.4e-159 565.1 406 69.7
Cc02_g01450 Coffea canephora HOM05D004576 ORTHO05D005321 1.7e-158 563.1 406 72.4
Dinv35342 Davidia involucrata HOM05D004576 ORTHO05D005321 3.7e-158 562.0 406 70.0
Prupe.2G309200 Prunus persica HOM05D004576 ORTHO05D005321 6.4e-158 561.2 407 70.0
Manes.07G095000 Manihot esculenta HOM05D004576 ORTHO05D005321 1.1e-157 560.5 406 72.4
Manes.10G051900 Manihot esculenta HOM05D004576 ORTHO05D005321 1.4e-157 560.1 406 70.2
vmacro10126 Vaccinium macrocarpon HOM05D004576 ORTHO05D005321 1.4e-157 560.1 406 71.2
Nn1g00276 Nelumbo nucifera HOM05D004576 ORTHO05D005321 4.1e-157 558.5 406 70.4
CSS0008628 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 5.4e-157 558.1 406 70.7
HPP92_010727 Vanilla planifolia HOM05D004576 ORTHO05D005321 9.2e-157 557.4 401 70.8
CiPaw.06G045600 Carya illinoinensis HOM05D004576 ORTHO05D005321 1.6e-156 556.6 401 71.6
Sopen01g002110 Solanum pennellii HOM05D004576 ORTHO05D005321 3.5e-156 555.4 406 70.7
Gohir.D04G001200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 4.6e-156 555.1 407 70.0
Gorai.012G002200 Gossypium raimondii HOM05D004576 ORTHO05D005321 4.6e-156 555.1 407 70.0
Potri.012G016500 Populus trichocarpa HOM05D004576 ORTHO05D005321 4.6e-156 555.1 407 71.3
Hund11655 Selenicereus undatus HOM05D004576 ORTHO05D005321 7.8e-156 554.3 406 68.0
Actinidia06144 Actinidia chinensis HOM05D004576 ORTHO05D005321 1.7e-155 553.1 401 70.8
Ca_16714_v3 Cicer arietinum L. HOM05D004576 ORTHO05D005321 3.0e-155 552.4 406 68.5
Solyc01g006110.3 Solanum lycopersicum HOM05D004576 ORTHO05D005321 3.0e-155 552.4 406 70.2
TAR629G2734 Trochodendron aralioides HOM05D004576 ORTHO05D005321 6.6e-155 551.2 405 72.3
CAN.G140.19 Capsicum annuum HOM05D004576 ORTHO05D005321 2.5e-154 549.3 406 68.5
RcHm_v2.0_Chr1g0380451 Rosa chinensis HOM05D004576 ORTHO05D005321 2.5e-154 549.3 410 69.0
Gohir.A05G415000 Gossypium hirsutum HOM05D004576 ORTHO05D005321 3.3e-154 548.9 407 68.6
Hma1.2p1_1587F.1_g292290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 3.3e-154 548.9 410 70.5
Hma1.2p1_0404F.1_g145290 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 5.6e-154 548.1 410 70.5
MBI06_g10867_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 5.6e-154 548.1 432 67.8
Duzib068G0175 Durio zibethinus HOM05D004576 ORTHO05D005321 7.3e-154 547.7 401 70.6
Glyma.04G234900 Glycine max HOM05D004576 ORTHO05D005321 7.3e-154 547.7 401 69.3
PGSC0003DMG400032187 Solanum tuberosum HOM05D004576 ORTHO05D005321 7.3e-154 547.7 406 69.7
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 1.6e-153 546.6 400 70.5
arahy.Tifrunner.gnm1.ann1.EHU7FT Arachis hypogaea HOM05D004576 ORTHO05D005321 2.1e-153 546.2 407 67.8
arahy.Tifrunner.gnm1.ann1.S03LBS Arachis hypogaea HOM05D004576 ORTHO05D005321 2.1e-153 546.2 407 67.8
Phvul.009G051900 Phaseolus vulgaris HOM05D004576 ORTHO05D005321 4.7e-153 545.0 401 70.3
FAN06G0548 Fragaria x ananassa HOM05D004576 ORTHO05D005321 8.1e-153 544.3 410 67.8
FAN06G1560 Fragaria x ananassa HOM05D004576 ORTHO05D005321 1.1e-152 543.9 410 68.0
Ah.07g205540 Amaranthus hybridus HOM05D004576 ORTHO05D005321 2.3e-152 542.7 406 68.5
Cpa.g.sc3.95 Carica papaya HOM05D004576 ORTHO05D005321 2.3e-152 542.7 406 68.5
FvH4_7g31380 Fragaria vesca HOM05D004576 ORTHO05D005321 2.3e-152 542.7 410 67.6
Potri.015G012200 Populus trichocarpa HOM05D004576 ORTHO05D005321 2.3e-152 542.7 402 70.9
TAR633G0881 Trochodendron aralioides HOM05D004576 ORTHO05D005321 2.3e-152 542.7 400 69.8
Cfa016237 Carpinus fangiana HOM05D004576 ORTHO05D005321 4.0e-152 542.0 406 69.2
Haze_00204 Corylus avellana HOM05D004576 ORTHO05D005321 4.0e-152 542.0 406 70.2
FAN01G2495 Fragaria x ananassa HOM05D004576 ORTHO05D005321 6.8e-152 541.2 410 67.3
Thecc.03G200200 Theobroma cacao HOM05D004576 ORTHO05D005321 6.8e-152 541.2 406 69.0
CANSAT21G1766 Cannabis sativa HOM05D004576 ORTHO05D005321 8.9e-152 540.8 408 68.6
COL.COLO4_16771 Corchorus olitorius HOM05D004576 ORTHO05D005321 1.5e-151 540.0 421 66.0
Nitab4.5_0003555g0040 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.5e-151 540.0 406 67.2
Psat5g076560 Pisum sativum HOM05D004576 ORTHO05D005321 1.5e-151 540.0 406 69.0
FAN03G3343 Fragaria x ananassa HOM05D004576 ORTHO05D005321 2.6e-151 539.3 410 67.8
Sc25g0000910 Simmondsia chinensis HOM05D004576 ORTHO05D005321 9.9e-151 537.3 406 68.2
MD01G1217800 Malus domestica HOM05D004576 ORTHO05D005321 1.7e-150 536.6 408 67.2
SGA_v2.0_scaffold192G40533 Striga asiatica HOM05D004576 ORTHO05D005321 3.7e-150 535.4 401 70.1
Hma1.2p1_1507F.1_g287630 Hydrangea macrophylla HOM05D004576 ORTHO05D005321 4.9e-150 535.0 406 68.7
Lalb_Chr11g0066931 Lupinus albus HOM05D004576 ORTHO05D005321 1.4e-149 533.5 407 67.1
PGR042G3016 Punica granatum HOM05D004576 ORTHO05D005321 1.4e-149 533.5 402 66.2
Atru.chr12.2224 Acer truncatum HOM05D004576 ORTHO05D005321 2.4e-149 532.7 402 67.9
MD07G1287100 Malus domestica HOM05D004576 ORTHO05D005321 3.2e-149 532.3 407 66.6
MD07G1287400 Malus domestica HOM05D004576 ORTHO05D005321 3.2e-149 532.3 407 66.6
Medtr3g091640 Medicago truncatula HOM05D004576 ORTHO05D005321 2.1e-148 529.6 407 68.1
EL10Ac3g05272 Beta vulgaris HOM05D004576 ORTHO05D005321 1.0e-147 527.3 406 65.5
Aqoxy7G00528 Aquilegia oxysepala HOM05D004576 ORTHO05D005321 1.3e-147 526.9 406 66.3
TWI39G0751 Tripterygium wilfordii HOM05D004576 ORTHO05D005321 1.3e-147 526.9 410 67.6
CDE02G4477 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 2.3e-147 526.2 406 67.7
CAN.G575.13 Capsicum annuum HOM05D004576 ORTHO05D005321 1.9e-146 523.1 406 66.0
DCAR_020325 Daucus carota HOM05D004576 ORTHO05D005321 1.9e-146 523.1 406 68.7
HanXRQChr07g0206441 Helianthus annuus HOM05D004576 ORTHO05D005321 9.5e-146 520.8 411 66.9
PSO063G4456 Papaver somniferum HOM05D004576 ORTHO05D005321 1.6e-145 520.0 406 64.3
MELO3C021489.2 Cucumis melo HOM05D004576 ORTHO05D005321 2.1e-145 519.6 400 67.2
Peaxi162Scf00441g00115 Petunia axillaris HOM05D004576 ORTHO05D005321 2.1e-145 519.6 405 67.4
CsaV3_5G037660 Cucumis sativus L. HOM05D004576 ORTHO05D005321 2.8e-145 519.2 400 66.0
AUR62019411 Chenopodium quinoa HOM05D004576 ORTHO05D005321 3.6e-145 518.8 406 64.5
Lj4g0015379 Lotus japonicus HOM05D004576 ORTHO05D005321 1.1e-144 517.3 407 66.1
Migut.F00204 Erythranthe guttata HOM05D004576 ORTHO05D005321 4.0e-144 515.4 406 67.7
ClCG09G018570 Citrullus lanatus HOM05D004576 ORTHO05D005321 6.8e-144 514.6 400 66.8
Eucgr.A01454 Eucalyptus grandis HOM05D004576 ORTHO05D005321 1.2e-143 513.8 406 64.3
Ciclev10020388m.g Citrus clementina HOM05D004576 ORTHO05D005321 2.0e-143 513.1 412 65.3
ECA238G3082 Erigeron canadensis HOM05D004576 ORTHO05D005321 4.4e-143 511.9 407 65.4
QL09p008710 Quercus lobata HOM05D004576 ORTHO05D005321 4.4e-143 511.9 441 60.5
TPR.G18754 Trifolium pratense HOM05D004576 ORTHO05D005321 9.9e-143 510.8 390 66.4
Os12g0137500 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 1.7e-142 510.0 404 64.1
CSS0016084 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 2.9e-142 509.2 406 65.3
Oeu023658.2 Olea europaea HOM05D004576 ORTHO05D005321 4.9e-142 508.4 454 60.8
PSO170G5996 Papaver somniferum HOM05D004576 ORTHO05D005321 4.9e-142 508.4 406 64.0
Sed0009575 Sechium edule HOM05D004576 ORTHO05D005321 6.4e-142 508.1 401 65.6
SEGI_39808 Sequoiadendron giganteum HOM05D004576 ORTHO05D005321 1.4e-141 506.9 406 63.8
Sed0014456 Sechium edule HOM05D004576 ORTHO05D005321 2.4e-141 506.1 401 66.8
Thhalv10013705m.g Eutrema salsugineum HOM05D004576 ORTHO05D005321 1.2e-140 503.8 406 64.8
SalBow4G0465 Salvia bowleyana HOM05D004576 ORTHO05D005321 2.7e-140 502.7 451 58.5
AUR62006083 Chenopodium quinoa HOM05D004576 ORTHO05D005321 6.0e-140 501.5 406 64.0
Zm00001eb093250 Zea mays HOM05D004576 ORTHO05D005321 7.8e-140 501.1 404 62.4
Aa31LG9G16760 Aethionema arabicum HOM05D004576 ORTHO05D005321 1.7e-139 500.0 401 64.6
A10p10480 Brassica napus HOM05D004576 ORTHO05D005321 1.7e-139 500.0 406 64.3
C09p42710 Brassica napus HOM05D004576 ORTHO05D005321 5.1e-139 498.4 406 64.0
Sp6g15160 Schrenkiella parvula HOM05D004576 ORTHO05D005321 6.6e-139 498.0 401 64.6
BolC9t57147H Brassica oleracea HOM05D004576 ORTHO05D005321 1.1e-138 497.3 406 64.0
CARHR265990 Cardamine hirsuta HOM05D004576 ORTHO05D005321 1.1e-138 497.3 406 64.3
Nitab4.5_0005477g0060 Nicotiana tabacum HOM05D004576 ORTHO05D005321 1.1e-138 497.3 406 63.1
BraA10t43131Z Brassica rapa HOM05D004576 ORTHO05D005321 1.5e-138 496.9 406 63.8
Gohir.D12G250200 Gossypium hirsutum HOM05D004576 ORTHO05D005321 2.5e-138 496.1 406 63.8
Gorai.008G268300 Gossypium raimondii HOM05D004576 ORTHO05D005321 2.5e-138 496.1 406 63.8
THA.LOC104799972 Tarenaya hassleriana HOM05D004576 ORTHO05D005321 1.2e-137 493.8 401 65.3
Oeu041059.3 Olea europaea HOM05D004576 ORTHO05D005321 1.6e-137 493.4 444 61.0
AL4G21090 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.8e-137 492.7 405 63.7
MSTRG.27022 Avicennia marina HOM05D004576 ORTHO05D005321 2.4e-136 489.6 401 63.1
Lsat_1_v5_gn_2_136141 Lactuca sativa HOM05D004576 ORTHO05D005321 3.1e-136 489.2 406 64.8
AT5G53000 Arabidopsis thaliana HOM05D004576 ORTHO05D005321 2.6e-135 486.1 406 63.5
AL8G27600 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.4e-135 485.7 411 62.0
Sabra15G0009800 Salix brachista HOM05D004576 ORTHO05D005321 5.8e-135 485.0 404 65.3
unitig_748.g7294 Utricularia gibba HOM05D004576 ORTHO05D005321 5.8e-135 485.0 405 62.0
BcaC04g20518 Brassica carinata HOM05D004576 ORTHO05D005321 1.6e-132 476.9 406 62.8
Lj3C903T12 Lonicera japonica HOM05D004576 ORTHO05D005321 7.8e-132 474.6 407 62.7
Gohir.A12G249400 Gossypium hirsutum HOM05D004576 ORTHO05D005321 1.9e-130 469.9 407 62.9
Zm00001eb196410 Zea mays HOM05D004576 ORTHO05D005321 3.3e-130 469.2 399 59.4
Carub.0008s1320 Capsella rubella HOM05D004576 ORTHO05D005321 4.8e-129 465.3 406 60.1
Lsat_1_v5_gn_3_139541 Lactuca sativa HOM05D004576 ORTHO05D005321 2.4e-128 463.0 416 61.3
PSO170G4165 Papaver somniferum HOM05D004576 ORTHO05D005321 1.2e-127 460.7 359 65.2
Os11g0141000 Oryza sativa ssp. japonica HOM05D004576 ORTHO05D005321 3.1e-112 409.5 376 58.5
Medtr1g050518 Medicago truncatula HOM05D004576 ORTHO05D005321 4.0e-112 409.1 332 64.8
AL8G27540 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 9.0e-112 407.9 520 46.9
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 7.1e-109 398.3 317 63.7
SMO118G0543 Selaginella moellendorffii HOM05D004576 ORTHO05D005321 9.3e-109 397.9 406 51.7
Pp3c27_2200 Physcomitrium patens HOM05D004576 ORTHO05D005321 1.3e-107 394.0 408 53.9
Pp3c27_2230 Physcomitrium patens HOM05D004576 ORTHO05D005321 1.3e-107 394.0 408 53.9
SHI02368 Sapria himalayana HOM05D004576 ORTHO05D005321 8.7e-107 391.3 435 54.7
PGSC0003DMG400004286 Solanum tuberosum HOM05D004576 ORTHO05D005321 1.5e-106 390.6 296 67.6
Nitab4.5_0001620g0020 Nicotiana tabacum HOM05D004576 ORTHO05D005321 6.3e-105 385.2 443 53.0
AagrBONN_evm.TU.Sc2ySwM_368.1428 Anthoceros agrestis HOM05D004576 ORTHO05D005321 3.9e-99 365.9 400 51.0
Mapoly0036s0077 Marchantia polymorpha HOM05D004576 ORTHO05D005321 3.4e-95 352.8 408 49.3
BolC2t08029H Brassica oleracea HOM05D004576 ORTHO05D005321 4.5e-95 352.4 405 51.4
CiPaw.05G197500 Carya illinoinensis HOM05D004576 ORTHO05D005321 1.4e-83 314.3 408 50.5
BcaC03g14466 Brassica carinata HOM05D004576 ORTHO05D005321 1.3e-73 281.2 405 45.7
Dinv29270 Davidia involucrata HOM05D004576 ORTHO05D005321 8.5e-70 268.5 203 68.5
MBI07_g24780_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 8.0e-68 261.9 363 44.6
CBR_g54194 Chara braunii HOM05D004576 ORTHO05D005321 6.3e-65 252.3 431 39.4
MBI07_g45568_MAGBIO Magnolia biondii HOM05D004576 ORTHO05D005321 9.8e-58 228.4 301 43.9
C02p18880 Brassica napus HOM05D004576 ORTHO05D005321 1.3e-54 218.0 277 48.4
AL4G21010 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 1.6e-39 167.9 149 60.4
ATR0602G017 Amborella trichopoda HOM05D004576 ORTHO05D005321 4.1e-32 143.3 106 68.9
AL4G21000 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 2.7e-31 140.6 145 58.6
ATR0602G122 Amborella trichopoda HOM05D004576 ORTHO05D005321 7.6e-26 122.5 68 91.2
SGA_v2.0_scaffold44G16809 Striga asiatica HOM05D004576 ORTHO05D005321 1.3e-25 121.7 100 62.0
MCO15G223 Micromonas commoda HOM05D004576 ORTHO05D005321 2.4e-24 117.5 427 26.5
Actinidia08655 Actinidia chinensis HOM05D004576 ORTHO05D005321 1.2e-23 115.2 94 64.9
Lj1g0016726 Lotus japonicus HOM05D004576 ORTHO05D005321 2.3e-22 110.9 128 48.4
TAR636G2906 Trochodendron aralioides HOM05D004576 ORTHO05D005321 3.6e-20 103.6 82 73.2
CSS0039200 Camellia sinensis var. sinensis HOM05D004576 ORTHO05D005321 8.1e-20 102.4 73 69.9
CAN.G140.18 Capsicum annuum HOM05D004576 ORTHO05D005321 2.4e-19 100.9 70 71.4
PRCOL_00002440 Prasinoderma coloniale HOM05D004576 ORTHO05D005321 9.0e-19 99.0 444 26.4
TPR.G19381 Trifolium pratense HOM05D000003 ORTHO05D000004 2.9e-17 94.0 85 61.2
Cfa025674 Carpinus fangiana HOM05D004576 ORTHO05D005321 7.1e-16 89.4 376 25.3
Cre09.g395621 Chlamydomonas reinhardtii HOM05D004576 ORTHO05D005321 2.7e-15 87.4 454 26.2
AL4G21040 Arabidopsis lyrata HOM05D004576 ORTHO05D005321 3.6e-12 77.0 81 56.8
CDE08G1665 Ceratophyllum demersum HOM05D004576 ORTHO05D005321 2.6e-10 70.9 55 63.6
BcaB05g21998 Brassica carinata HOM05D004576 ORTHO05D005321 2.7e-07 60.8 52 53.8
C03p88580 Brassica napus HOM05D004576 ORTHO05D005321 8.7e-06 55.8 86 41.9


User provided reference genes

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