Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0762G059 Amborella trichopoda HOM05D009517 ORTHO05D011612 1.9e-93 345.9 183 100.0
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 5.6e-21 105.1 168 42.3
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 2.7e-15 86.3 167 40.1
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 9.7e-13 77.8 162 37.0
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 2.2e-12 76.6 181 35.4
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 2.2e-12 76.6 180 33.3
MBI06_g19436_MAGBIO Magnolia biondii HOM05D009517 ORTHO05D011612 2.2e-12 76.6 162 36.4
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 3.7e-12 75.9 180 33.3
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 8.2e-12 74.7 182 31.9
Os04g0672300 Oryza sativa ssp. japonica HOM05D009517 ORTHO05D011612 1.1e-11 74.3 139 36.7
PSO063G2919 Papaver somniferum HOM05D009517 ORTHO05D011612 1.1e-11 74.3 133 41.4
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.4e-11 73.9 180 34.4
FvH4_4g36470 Fragaria vesca HOM05D009517 ORTHO05D011612 1.8e-11 73.6 150 36.7
FAN12G1831 Fragaria x ananassa HOM05D009517 ORTHO05D011612 1.8e-11 73.6 150 36.7
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 3.1e-11 72.8 194 33.5
PSO782G3294 Papaver somniferum HOM05D009517 ORTHO05D011612 3.1e-11 72.8 131 41.2
HPP92_008578 Vanilla planifolia HOM05D009517 ORTHO05D011612 3.1e-11 72.8 137 39.4
FAN07G2507 Fragaria x ananassa HOM05D009517 ORTHO05D011612 4.1e-11 72.4 151 37.1
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 6.9e-11 71.6 190 30.0
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 1.2e-10 70.9 178 33.7
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.5e-10 70.5 207 35.3
FAN17G1386 Fragaria x ananassa HOM05D009517 ORTHO05D011612 1.5e-10 70.5 150 36.0
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.6e-10 69.7 184 35.3
Prupe.1G343700 Prunus persica HOM05D009517 ORTHO05D011612 3.4e-10 69.3 139 39.6
RcHm_v2.0_Chr4g0446231 Rosa chinensis HOM05D009517 ORTHO05D011612 3.4e-10 69.3 150 36.7
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 5.9e-10 68.6 171 33.3
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 5.9e-10 68.6 218 30.7
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 7.7e-10 68.2 154 35.7
CDE05G3057 Ceratophyllum demersum HOM05D067338 ORTHO05D004706 7.7e-10 68.2 136 38.2
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.0e-09 67.8 190 31.6
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 1.7e-09 67.0 180 29.4
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 1.7e-09 67.0 176 29.5
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 1.7e-09 67.0 164 33.5
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.7e-09 67.0 191 33.5
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 2.2e-09 66.6 168 34.5
MD13G1009000 Malus domestica HOM05D009517 ORTHO05D011612 2.2e-09 66.6 135 40.0
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 3.8e-09 65.9 179 31.3
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 5.0e-09 65.5 170 34.7
CDE04G1930 Ceratophyllum demersum HOM05D009517 ORTHO05D011612 6.5e-09 65.1 138 38.4
CDE07G1492 Ceratophyllum demersum HOM05D009517 ORTHO05D011612 6.5e-09 65.1 138 37.7
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 8.5e-09 64.7 186 29.6
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 8.5e-09 64.7 180 33.3
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 8.5e-09 64.7 193 30.6
Sabra10G0069600 Salix brachista HOM05D009517 ORTHO05D011612 8.5e-09 64.7 155 36.8
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 1.1e-08 64.3 186 30.6
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 1.1e-08 64.3 166 35.5
Zm00001eb433470 Zea mays HOM05D009517 ORTHO05D011612 1.1e-08 64.3 137 38.0
TWI77G0330 Tripterygium wilfordii HOM05D009517 ORTHO05D011612 1.4e-08 63.9 148 37.2
Dinv26546 Davidia involucrata HOM05D009517 ORTHO05D011612 1.9e-08 63.5 137 33.6
FAN22G0198 Fragaria x ananassa HOM05D009517 ORTHO05D011612 1.9e-08 63.5 150 34.7
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 1.9e-08 63.5 155 34.2
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 2.5e-08 63.2 194 30.4
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 2.5e-08 63.2 195 31.8
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 2.5e-08 63.2 195 31.8
Zm00001eb066620 Zea mays HOM05D009517 ORTHO05D011612 2.5e-08 63.2 138 39.9
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 3.2e-08 62.8 194 34.5
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 3.2e-08 62.8 194 30.4
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 4.2e-08 62.4 163 33.1
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 4.2e-08 62.4 167 37.1
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 4.2e-08 62.4 170 33.5
QL03p042931 Quercus lobata HOM05D009517 ORTHO05D011612 4.2e-08 62.4 135 37.0
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 4.2e-08 62.4 194 33.0
Potri.010G097100 Populus trichocarpa HOM05D009517 ORTHO05D011612 5.5e-08 62.0 141 38.3
HPP92_001786 Vanilla planifolia HOM05D033938 ORTHO05D004706 5.5e-08 62.0 49 59.2
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 7.2e-08 61.6 185 34.1
MD16G1007000 Malus domestica HOM05D009517 ORTHO05D011612 7.2e-08 61.6 157 36.9
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 7.2e-08 61.6 183 29.5
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 1.2e-07 60.8 181 32.0
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 1.2e-07 60.8 201 30.3
HPP92_008557 Vanilla planifolia HOM05D009517 ORTHO05D011612 1.2e-07 60.8 131 33.6
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 1.6e-07 60.5 185 34.1
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 1.6e-07 60.5 132 37.1
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 1.6e-07 60.5 193 30.1
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 2.1e-07 60.1 197 32.5
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 2.7e-07 59.7 198 34.3
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 2.7e-07 59.7 145 31.7
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 2.7e-07 59.7 128 37.5
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 2.7e-07 59.7 192 29.7
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 2.7e-07 59.7 188 27.7
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 2.7e-07 59.7 192 29.2
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 3.6e-07 59.3 168 31.0
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 3.6e-07 59.3 194 33.0
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 4.6e-07 58.9 161 34.2
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 4.6e-07 58.9 132 37.1
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 4.6e-07 58.9 166 30.1
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 4.6e-07 58.9 180 32.2
Potri.008G145000 Populus trichocarpa HOM05D009517 ORTHO05D011612 4.6e-07 58.9 157 35.7
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 4.6e-07 58.9 176 30.1
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 6.1e-07 58.5 173 31.8
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 6.1e-07 58.5 185 27.6
Zm00001eb323150 Zea mays HOM05D035907 ORTHO05D004706 6.1e-07 58.5 166 36.1
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 7.9e-07 58.2 192 31.2
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 7.9e-07 58.2 167 31.7
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 1.0e-06 57.8 177 30.5
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.0e-06 57.8 195 30.3
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 1.0e-06 57.8 194 28.4
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.4e-06 57.4 163 33.1
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 1.4e-06 57.4 173 31.2
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 1.4e-06 57.4 173 32.9
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 1.4e-06 57.4 195 27.7
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 1.4e-06 57.4 167 31.7
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 1.8e-06 57.0 173 31.8
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 1.8e-06 57.0 173 31.8
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 1.8e-06 57.0 187 33.7
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 1.8e-06 57.0 152 29.6
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 1.8e-06 57.0 192 31.2
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.8e-06 57.0 159 32.1
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 1.8e-06 57.0 159 32.7
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 2.3e-06 56.6 152 32.9
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 2.3e-06 56.6 189 30.7
SalBow1G7297 Salvia bowleyana HOM05D004361 ORTHO05D004706 2.3e-06 56.6 63 52.4
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 3.0e-06 56.2 173 31.2
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 3.0e-06 56.2 173 31.2
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 3.0e-06 56.2 173 31.2
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.0e-06 56.2 195 29.7
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 3.0e-06 56.2 184 29.3
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 3.0e-06 56.2 157 31.2
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 3.0e-06 56.2 183 31.1
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 3.0e-06 56.2 204 28.9
CDE04G1647 Ceratophyllum demersum HOM05D009517 ORTHO05D011612 3.9e-06 55.8 141 34.0
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 5.1e-06 55.5 203 29.1
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 6.7e-06 55.1 194 32.0
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 6.7e-06 55.1 203 27.1
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 6.7e-06 55.1 169 30.2
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 6.7e-06 55.1 169 30.2
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 8.8e-06 54.7 173 30.6
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 8.8e-06 54.7 166 29.5
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 8.8e-06 54.7 42 71.4
Os07g0530700 Oryza sativa ssp. japonica HOM05D035907 ORTHO05D004706 8.8e-06 54.7 44 63.6


User provided reference genes

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