Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 1.8e-227 792.3 430 100.0
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 9.5e-144 514.2 360 73.3
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 1.6e-143 513.5 368 70.9
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 2.8e-143 512.7 378 72.0
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 1.8e-142 510.0 360 72.5
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 3.1e-142 509.2 368 70.7
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 6.8e-142 508.1 371 69.5
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 6.8e-142 508.1 363 70.0
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 1.2e-141 507.3 363 70.8
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 1.2e-141 507.3 360 70.3
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 5.8e-141 505.0 370 69.7
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 9.8e-141 504.2 371 70.4
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.2e-140 503.1 363 71.1
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 2.9e-140 502.7 367 70.0
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 3.7e-140 502.3 360 70.8
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 8.3e-140 501.1 364 70.6
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 8.3e-140 501.1 361 69.8
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 1.1e-139 500.7 360 70.3
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 1.4e-139 500.4 360 70.0
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 3.2e-139 499.2 364 70.9
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 1.6e-138 496.9 368 69.8
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 1.6e-138 496.9 360 70.0
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 1.6e-138 496.9 359 69.9
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 2.7e-138 496.1 364 68.7
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 2.7e-138 496.1 367 69.8
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 1.0e-137 494.2 366 68.0
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 1.7e-137 493.4 370 69.7
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 2.3e-137 493.0 361 69.5
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 1.9e-136 490.0 368 70.1
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 4.3e-136 488.8 366 67.2
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 7.3e-136 488.0 394 64.5
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 7.3e-136 488.0 369 69.4
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 1.2e-135 487.3 360 68.6
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 1.2e-135 487.3 356 69.7
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 1.6e-135 486.9 362 69.3
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 2.1e-135 486.5 370 67.0
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 2.8e-135 486.1 361 69.3
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 3.6e-135 485.7 394 63.7
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 1.4e-134 483.8 366 67.2
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 1.4e-134 483.8 376 66.8
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 5.2e-134 481.9 355 68.2
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 2.0e-133 479.9 287 78.7
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 7.5e-133 478.0 361 66.8
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 4.9e-132 475.3 369 67.2
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 6.4e-132 474.9 420 62.9
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.9e-131 473.4 360 67.5
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 2.4e-131 473.0 360 69.2
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 3.2e-131 472.6 360 65.0
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 3.2e-131 472.6 363 66.1
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 4.1e-131 472.2 360 69.2
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 5.4e-131 471.9 360 65.3
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 5.4e-131 471.9 360 67.5
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 5.4e-131 471.9 392 64.5
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 7.0e-131 471.5 390 63.3
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 9.2e-131 471.1 361 65.7
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 2.1e-130 469.9 358 68.7
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 2.1e-130 469.9 360 67.2
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 2.7e-130 469.5 374 64.2
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 2.7e-130 469.5 362 66.6
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 2.7e-130 469.5 361 65.7
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 4.6e-130 468.8 363 67.5
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 2.3e-129 466.5 362 66.6
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 3.0e-129 466.1 287 77.7
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 3.9e-129 465.7 361 64.8
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 6.6e-129 464.9 368 64.7
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 8.6e-129 464.5 358 67.0
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 8.6e-129 464.5 358 67.0
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 1.1e-128 464.2 287 76.7
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 1.1e-128 464.2 363 66.1
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 2.5e-128 463.0 361 65.7
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 2.5e-128 463.0 358 65.4
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 7.3e-128 461.5 358 65.1
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 1.2e-127 460.7 358 67.0
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 2.1e-127 459.9 363 63.4
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 2.8e-127 459.5 363 64.5
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 8.1e-127 458.0 360 65.6
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 1.1e-126 457.6 364 63.7
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 5.2e-126 455.3 360 66.1
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 5.8e-125 451.8 360 65.0
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 1.7e-124 450.3 344 67.4
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 2.2e-124 449.9 364 64.8
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 6.4e-124 448.4 350 64.3
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 1.9e-123 446.8 369 63.1
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 3.2e-123 446.0 369 63.4
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.7e-121 440.3 361 64.8
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 5.1e-121 438.7 486 52.7
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 6.6e-121 438.3 369 62.1
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 2.5e-120 436.4 325 68.9
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 5.6e-120 435.3 358 64.0
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 7.3e-120 434.9 368 59.8
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 9.5e-120 434.5 367 62.4
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 3.6e-119 432.6 369 61.0
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 4.7e-119 432.2 366 62.0
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 8.1e-119 431.4 366 61.7
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 8.1e-119 431.4 366 61.7
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 1.4e-118 430.6 372 61.0
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 2.4e-118 429.9 372 60.5
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 4.0e-118 429.1 366 61.7
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 5.2e-118 428.7 369 61.0
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 6.8e-118 428.3 361 62.3
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 1.5e-117 427.2 366 61.5
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 2.0e-117 426.8 366 61.5
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 3.8e-116 422.5 366 60.7
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 4.9e-116 422.2 371 60.6
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 5.4e-115 418.7 361 58.4
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 1.2e-114 417.5 358 61.5
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 2.7e-114 416.4 367 58.3
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 3.0e-113 412.9 367 59.4
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 4.3e-112 409.1 287 70.7
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 2.1e-111 406.8 371 58.8
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 2.1e-111 406.8 290 64.5
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.8e-111 406.4 329 64.7
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.5e-109 400.6 359 61.0
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 4.4e-109 399.1 364 59.1
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.7e-108 397.1 359 59.1
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 3.8e-108 396.0 361 58.2
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.4e-107 394.0 323 63.5
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 1.9e-107 393.7 352 59.1
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.9e-107 393.7 362 60.2
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 7.1e-107 391.7 287 70.4
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 1.2e-106 391.0 360 58.9
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 1.6e-106 390.6 361 57.9
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 3.5e-106 389.4 361 57.1
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 6.0e-106 388.7 361 57.1
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 3.9e-105 386.0 361 56.5
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 1.1e-104 384.4 359 57.4
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 4.3e-104 382.5 351 56.7
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 1.1e-102 377.9 359 56.5
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 1.1e-102 377.9 359 56.5
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 1.4e-102 377.5 359 56.8
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 1.4e-102 377.5 359 56.8
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 1.8e-102 377.1 361 56.0
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 2.0e-101 373.6 359 56.0
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 7.9e-98 361.7 358 56.4
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 2.1e-95 353.6 331 55.3
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 1.4e-94 350.9 383 50.9
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 4.0e-94 349.4 272 65.4
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 2.8e-87 326.6 251 64.9
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 1.7e-71 274.2 161 79.5
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 3.6e-58 229.9 290 42.8
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 5.3e-54 216.1 171 63.2
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 1.2e-53 214.9 289 42.6
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 3.8e-52 209.9 160 65.0
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 1.0e-49 201.8 258 47.3
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 1.7e-36 157.9 248 41.9
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 1.4e-30 138.3 189 42.3
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 2.3e-25 120.9 72 79.2
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 2.2e-23 114.4 173 41.0
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 9.2e-22 109.0 111 59.5
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 1.5e-16 91.7 110 51.8
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 2.9e-15 87.4 241 28.2
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 2.4e-14 84.3 53 75.5
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 6.8e-09 66.2 99 41.4


User provided reference genes

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