Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 6.7e-91 337.4 180 100.0
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 8.5e-46 187.6 150 64.7
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 1.5e-45 186.8 146 65.1
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 4.2e-45 185.3 147 64.6
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 2.1e-44 183.0 157 61.1
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 2.7e-44 182.6 145 62.8
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 4.7e-44 181.8 147 65.3
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 8.0e-44 181.0 146 63.0
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 5.2e-43 178.3 175 56.0
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 6.7e-43 177.9 160 59.4
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 6.7e-43 177.9 154 63.0
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 8.8e-43 177.6 151 59.6
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 8.8e-43 177.6 153 58.8
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 8.8e-43 177.6 153 58.8
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.2e-42 177.2 177 55.9
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 1.2e-42 177.2 155 59.4
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 1.2e-42 177.2 150 59.3
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 1.2e-42 177.2 155 60.0
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 1.5e-42 176.8 180 52.2
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 2.0e-42 176.4 144 60.4
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 2.6e-42 176.0 144 60.4
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 3.3e-42 175.6 150 60.0
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 4.4e-42 175.3 149 61.1
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 4.4e-42 175.3 147 61.2
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 5.7e-42 174.9 149 61.1
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 5.7e-42 174.9 152 63.2
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 7.5e-42 174.5 151 58.3
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 7.5e-42 174.5 145 58.6
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 9.7e-42 174.1 162 59.9
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 1.3e-41 173.7 163 57.1
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 1.3e-41 173.7 154 55.8
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 1.3e-41 173.7 152 58.6
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 2.2e-41 172.9 159 56.6
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 3.7e-41 172.2 145 58.6
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 3.7e-41 172.2 165 55.2
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 6.3e-41 171.4 179 50.8
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 6.3e-41 171.4 179 50.8
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 6.3e-41 171.4 150 58.0
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 8.2e-41 171.0 145 57.9
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 1.1e-40 170.6 175 52.0
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 1.1e-40 170.6 147 58.5
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 1.1e-40 170.6 153 55.6
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 1.1e-40 170.6 156 55.8
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 1.4e-40 170.2 146 57.5
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.4e-40 170.2 145 57.9
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 1.8e-40 169.9 145 57.9
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.8e-40 169.9 145 57.9
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 2.4e-40 169.5 147 60.5
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 2.4e-40 169.5 147 60.5
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 3.1e-40 169.1 155 52.3
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 4.1e-40 168.7 151 57.6
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 4.1e-40 168.7 142 62.0
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 5.3e-40 168.3 153 56.9
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 7.0e-40 167.9 168 54.2
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 9.1e-40 167.5 145 57.2
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 9.1e-40 167.5 150 57.3
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 1.6e-39 166.8 151 58.3
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 2.0e-39 166.4 147 59.2
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 4.5e-39 165.2 150 56.0
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 5.9e-39 164.9 155 55.5
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 7.7e-39 164.5 143 57.3
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 7.7e-39 164.5 147 55.8
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 1.0e-38 164.1 150 58.7
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 1.3e-38 163.7 149 56.4
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 1.7e-38 163.3 154 53.2
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 3.8e-38 162.2 157 54.8
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 5.0e-38 161.8 140 57.9
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 5.0e-38 161.8 159 54.7
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 6.5e-38 161.4 153 55.6
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 6.5e-38 161.4 150 56.0
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 8.5e-38 161.0 147 55.1
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 8.5e-38 161.0 147 55.8
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 1.1e-37 160.6 142 57.7
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 1.5e-37 160.2 151 55.0
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 1.5e-37 160.2 151 55.0
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 1.9e-37 159.8 146 56.2
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 2.5e-37 159.5 155 52.3
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 2.5e-37 159.5 143 57.3
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 3.2e-37 159.1 155 52.9
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 3.2e-37 159.1 150 54.7
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 4.2e-37 158.7 150 54.7
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 5.5e-37 158.3 148 54.1
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 5.5e-37 158.3 144 59.0
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 7.2e-37 157.9 155 52.9
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 7.2e-37 157.9 143 55.9
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 7.2e-37 157.9 143 55.9
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 9.4e-37 157.5 145 53.8
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 1.2e-36 157.1 148 54.1
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 1.2e-36 157.1 153 54.2
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 1.2e-36 157.1 148 58.1
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 1.6e-36 156.8 144 54.9
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 2.1e-36 156.4 139 56.1
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 2.7e-36 156.0 146 54.8
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 2.7e-36 156.0 147 54.4
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 3.6e-36 155.6 139 56.1
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 3.6e-36 155.6 134 58.2
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 6.1e-36 154.8 157 54.1
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 2.3e-35 152.9 184 47.3
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 5.2e-35 151.8 150 54.7
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 5.2e-35 151.8 148 56.1
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 1.2e-34 150.6 147 53.7
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 2.0e-34 149.8 122 59.8
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 2.0e-34 149.8 122 59.8
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 2.6e-34 149.4 163 50.3
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 4.4e-34 148.7 176 48.3
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 4.4e-34 148.7 185 46.5
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 4.4e-34 148.7 142 52.8
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 7.5e-34 147.9 142 53.5
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 1.7e-33 146.7 122 56.6
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 6.3e-33 144.8 209 43.1
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 7.0e-32 141.4 120 55.8
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 7.0e-32 141.4 126 55.6
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 5.9e-31 138.3 158 48.1
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 6.5e-30 134.8 156 49.4
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 6.5e-30 134.8 156 49.4
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 1.6e-28 130.2 148 51.4
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 1.6e-28 130.2 136 53.7
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 8.0e-28 127.9 153 47.7
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 6.8e-27 124.8 119 52.1
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 9.8e-26 120.9 179 40.8
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 4.9e-25 118.6 116 49.1
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 8.3e-25 117.9 120 47.5
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 2.0e-23 113.2 118 52.5
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 4.5e-23 112.1 149 43.0
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 7.8e-23 111.3 147 42.9
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 6.6e-22 108.2 135 45.9
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 1.5e-21 107.1 248 30.2
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 4.3e-21 105.5 100 50.0
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 4.4e-18 95.5 126 42.1
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 4.4e-18 95.5 126 42.1
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 4.4e-18 95.5 168 38.1
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.8e-16 90.1 115 48.7
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 3.3e-13 79.3 106 39.6
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 5.2e-11 72.0 114 40.4
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 3.7e-09 65.9 66 53.0
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 5.4e-08 62.0 86 40.7
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 1.6e-07 60.5 86 40.7
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 4.6e-07 58.9 86 40.7
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 4.6e-07 58.9 86 40.7
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 6.6e-06 55.1 86 37.2


User provided reference genes

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