Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 0.0e+00 1758.0 842 100.0
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 0.0e+00 1163.3 831 66.4
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 0.0e+00 1161.7 838 66.7
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 0.0e+00 1150.2 838 66.0
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 0.0e+00 1149.8 846 66.1
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1148.3 829 66.5
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 0.0e+00 1137.9 839 66.0
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 0.0e+00 1135.2 834 64.5
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1131.7 831 63.8
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 0.0e+00 1129.4 846 63.6
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 0.0e+00 1128.2 841 64.3
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 0.0e+00 1125.5 833 63.5
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 0.0e+00 1125.2 831 64.1
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 0.0e+00 1124.8 833 63.9
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 0.0e+00 1123.6 833 63.7
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 0.0e+00 1120.5 833 63.9
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 0.0e+00 1119.0 829 65.5
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1115.9 837 64.6
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 0.0e+00 1115.5 839 64.2
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 0.0e+00 1115.5 836 63.4
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 0.0e+00 1114.4 841 63.1
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 0.0e+00 1114.4 829 63.8
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 0.0e+00 1111.7 841 64.0
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 0.0e+00 1111.3 837 63.0
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1109.4 837 64.4
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 0.0e+00 1108.6 835 64.3
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1108.2 837 64.2
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 0.0e+00 1108.2 832 63.5
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 0.0e+00 1107.8 838 63.6
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1107.0 835 64.6
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1105.9 835 64.2
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 0.0e+00 1105.9 833 63.9
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 0.0e+00 1105.1 835 62.4
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 0.0e+00 1102.8 837 64.0
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1102.4 841 63.7
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1101.7 839 63.2
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 0.0e+00 1101.7 841 63.7
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 0.0e+00 1100.5 828 63.9
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 0.0e+00 1099.3 843 62.8
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 0.0e+00 1099.3 834 62.1
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 0.0e+00 1098.6 841 63.9
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 0.0e+00 1097.8 829 63.4
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 0.0e+00 1097.4 831 62.8
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 0.0e+00 1097.4 835 62.5
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 0.0e+00 1096.3 834 62.0
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 0.0e+00 1095.5 839 63.2
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 0.0e+00 1094.7 844 62.8
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 0.0e+00 1094.3 840 63.3
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 0.0e+00 1092.8 859 61.2
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1091.3 848 62.0
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 0.0e+00 1089.7 839 62.5
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 0.0e+00 1089.3 839 62.6
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 0.0e+00 1088.9 834 62.8
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 0.0e+00 1088.6 839 62.9
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1087.8 842 61.8
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 0.0e+00 1087.4 834 62.5
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 0.0e+00 1086.6 835 62.9
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 0.0e+00 1084.7 840 62.1
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 0.0e+00 1083.6 841 60.8
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 0.0e+00 1077.4 879 60.4
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 0.0e+00 1077.0 841 62.0
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 0.0e+00 1076.2 855 60.9
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 0.0e+00 1075.8 839 62.6
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 5.8e-312 1073.5 829 62.6
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 2.9e-311 1071.6 841 62.3
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 2.9e-311 1071.6 842 61.6
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 2.5e-310 1068.5 855 60.7
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 5.7e-310 1067.4 839 62.1
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 3.7e-309 1064.7 839 61.7
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 4.8e-309 1064.3 841 61.2
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 1.8e-308 1062.4 971 55.5
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 2.2e-306 1055.4 835 61.1
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 1.5e-305 1052.7 839 61.1
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 6.3e-301 1037.3 834 59.6
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 1.8e-300 1035.8 771 65.2
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 1.9e-297 1025.8 833 59.5
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 1.3e-293 1013.1 843 58.8
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 2.8e-293 1011.9 935 55.3
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 3.7e-293 1011.5 842 58.7
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 2.4e-292 1008.8 739 65.6
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 2.0e-291 1005.7 840 58.3
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 2.9e-290 1001.9 843 58.2
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 2.9e-290 1001.9 842 58.1
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 3.8e-290 1001.5 838 58.1
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 3.2e-289 998.4 842 57.7
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 3.2e-289 998.4 844 57.9
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 4.2e-289 998.0 843 58.1
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 1.6e-288 996.1 839 58.8
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 3.6e-288 995.0 844 58.4
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 6.1e-288 994.2 837 58.2
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 6.1e-288 994.2 834 59.1
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 3.0e-287 991.9 845 58.1
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 1.1e-284 983.4 835 57.8
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 1.0e-282 976.9 841 57.9
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 1.7e-282 976.1 764 62.4
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 2.9e-282 975.3 841 57.9
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 5.1e-258 894.8 667 63.9
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 8.6e-258 894.0 833 54.4
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 2.4e-252 875.9 856 51.8
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 6.0e-251 871.3 909 49.2
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 1.3e-242 843.6 841 52.8
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.9e-237 825.9 587 67.5
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 2.1e-235 819.7 608 63.5
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 7.1e-220 768.1 838 48.7
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 7.9e-195 684.9 827 45.2
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 2.3e-146 523.9 402 61.2
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 8.3e-144 515.4 402 63.4
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 1.1e-143 515.0 462 54.8
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 4.3e-124 449.9 357 59.7
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 4.8e-123 446.4 360 61.1
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 4.0e-106 390.2 263 69.2
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 4.5e-97 360.1 308 55.8
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 7.6e-97 359.4 857 30.3
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 3.2e-95 354.0 1196 27.0
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.2e-95 354.0 265 62.3
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 4.1e-90 337.0 851 31.6
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.6e-86 325.1 228 65.4
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 2.1e-86 324.7 817 31.9
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 6.3e-83 313.2 483 40.4
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 3.1e-82 310.8 196 70.9
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 2.2e-80 304.7 193 73.1
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 2.3e-77 294.7 294 54.8
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 4.4e-76 290.4 192 70.8
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 7.0e-66 256.5 240 54.2
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 6.1e-54 216.9 231 49.4
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 2.1e-46 191.8 197 48.7
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 2.6e-44 184.9 161 57.1
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 4.0e-37 161.0 210 42.9
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 4.0e-37 161.0 210 42.9
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 3.1e-29 134.8 111 61.3
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 2.0e-28 132.1 101 61.4
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 9.2e-26 123.2 99 59.6
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 1.6e-25 122.5 191 38.7
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 3.5e-25 121.3 65 83.1
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 1.1e-21 109.8 78 65.4
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 2.4e-21 108.6 74 66.2
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 2.2e-19 102.1 65 64.6
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 6.4e-19 100.5 131 41.2
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 2.7e-17 95.1 134 41.0
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 6.0e-17 94.0 64 70.3
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 2.3e-16 92.0 73 56.2
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 2.3e-16 92.0 97 46.4
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 1.9e-15 89.0 51 74.5
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 3.3e-15 88.2 53 73.6
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 4.4e-12 77.8 130 37.7
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 1.3e-11 76.3 59 50.8
BolC8t47194H Brassica oleracea HOM05D004962 ORTHO05D006249 3.5e-09 68.2 101 33.7
MD04G1005500 Malus domestica HOM05D000836 ORTHO05D000709 6.6e-08 63.9 374 21.7
TPR.G37555 Trifolium pratense HOM05D000464 ORTHO05D006292 2.5e-07 62.0 161 28.6
ECA236G0320 Erigeron canadensis HOM05D000526 ORTHO05D000956 3.3e-07 61.6 211 22.3
THA.LOC104798895 Tarenaya hassleriana HOM05D002332 ORTHO05D002509 3.3e-07 61.6 178 27.0
BcaC07g39390 Brassica carinata HOM05D002332 ORTHO05D002509 4.3e-07 61.2 180 27.8
C08p24150 Brassica napus HOM05D002332 ORTHO05D002509 4.3e-07 61.2 180 27.8
BolC8t50036H Brassica oleracea HOM05D002332 ORTHO05D002509 4.3e-07 61.2 180 27.8
Ah.02g120760 Amaranthus hybridus HOM05D001610 ORTHO05D001585 3.6e-06 58.2 140 28.6
PSO017G4890 Papaver somniferum HOM05D005401 ORTHO05D006582 3.6e-06 58.2 127 29.1
PSO170G5022 Papaver somniferum HOM05D005401 ORTHO05D006582 3.6e-06 58.2 127 29.1
Phvul.011G047700 Phaseolus vulgaris HOM05D004755 ORTHO05D006137 3.6e-06 58.2 134 28.4
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 4.8e-06 57.8 138 28.3
SHI06205 Sapria himalayana HOM05D005323 ORTHO05D000023 4.8e-06 57.8 158 22.2
COL.COLO4_29887 Corchorus olitorius HOM05D001610 ORTHO05D001585 6.2e-06 57.4 178 27.5
Pp3c13_21390 Physcomitrium patens HOM05D004755 ORTHO05D006137 6.2e-06 57.4 143 26.6
AL8G40810 Arabidopsis lyrata HOM05D001610 ORTHO05D001585 8.1e-06 57.0 275 21.8
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 8.1e-06 57.0 138 28.3
Haze_26121 Corylus avellana HOM05D002634 ORTHO05D003100 8.1e-06 57.0 89 30.3


User provided reference genes

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