Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 3.4e-292 1007.7 529 100.0
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 1.4e-101 374.4 520 48.8
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.9e-101 374.0 514 47.9
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 2.5e-101 373.6 514 47.7
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 2.5e-101 373.6 516 48.4
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 1.6e-100 370.9 514 47.5
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 6.1e-100 369.0 514 48.2
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 1.4e-99 367.9 515 48.0
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 3.0e-99 366.7 524 47.1
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 3.0e-99 366.7 515 48.0
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 5.1e-99 365.9 540 47.0
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 6.7e-99 365.5 304 67.4
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 8.8e-99 365.2 304 67.4
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 1.1e-98 364.8 513 47.6
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 1.1e-98 364.8 520 47.7
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 1.1e-98 364.8 529 48.4
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.9e-98 364.0 524 46.8
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.9e-98 364.0 281 70.8
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 3.7e-97 359.8 303 67.0
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 8.2e-97 358.6 520 47.5
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.1e-96 358.2 281 69.8
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 1.8e-96 357.5 515 46.8
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 1.8e-96 357.5 299 66.9
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 1.8e-96 357.5 515 47.0
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 2.4e-96 357.1 514 46.9
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 3.1e-96 356.7 322 64.6
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 3.1e-96 356.7 515 46.8
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 4.1e-96 356.3 541 45.3
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 4.1e-96 356.3 518 48.3
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 4.1e-96 356.3 297 68.4
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 5.3e-96 355.9 338 60.4
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 4.5e-95 352.8 303 66.3
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 4.5e-95 352.8 303 66.3
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 4.5e-95 352.8 330 62.4
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 7.7e-95 352.1 273 70.0
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 1.0e-94 351.7 335 60.9
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 1.3e-94 351.3 336 61.0
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 1.7e-94 350.9 310 63.5
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 6.5e-94 349.0 523 46.3
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 1.1e-93 348.2 304 64.1
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 1.1e-93 348.2 262 72.1
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 1.4e-93 347.8 291 67.4
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 1.9e-93 347.4 289 66.4
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 5.5e-93 345.9 273 69.2
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 5.5e-93 345.9 284 67.3
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 7.2e-93 345.5 313 63.3
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 9.4e-93 345.1 306 65.4
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 1.2e-92 344.7 306 63.4
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 1.0e-91 341.7 521 45.9
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 1.0e-91 341.7 281 66.9
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 3.9e-91 339.7 519 44.3
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 1.1e-90 338.2 283 66.4
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 5.7e-90 335.9 563 42.5
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 7.4e-90 335.5 533 43.0
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 1.7e-89 334.3 294 64.3
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 1.7e-89 334.3 294 64.3
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 2.2e-89 334.0 281 66.5
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 8.2e-89 332.0 515 45.8
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 1.1e-88 331.6 486 45.7
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 4.1e-88 329.7 298 61.7
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 7.0e-88 328.9 659 39.9
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 4.5e-87 326.2 267 66.7
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 4.5e-87 326.2 513 44.2
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 1.0e-86 325.1 416 49.3
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 1.3e-86 324.7 275 65.5
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 6.5e-86 322.4 269 66.5
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 6.5e-86 322.4 515 43.7
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 4.2e-85 319.7 517 43.5
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 9.4e-85 318.5 332 56.9
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 2.1e-84 317.4 509 44.2
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 2.1e-84 317.4 516 44.0
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 3.6e-84 316.6 305 57.4
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 2.3e-83 313.9 276 65.6
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 8.8e-83 312.0 274 64.6
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 1.1e-82 311.6 518 43.1
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 1.5e-82 311.2 273 64.5
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 4.4e-82 309.7 518 43.6
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 2.2e-81 307.4 286 60.8
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 1.1e-80 305.1 256 62.9
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 9.1e-80 302.0 507 41.4
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.3e-78 298.1 565 40.4
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 1.1e-77 295.0 523 41.9
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 3.2e-77 293.5 292 58.6
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 1.2e-74 285.0 517 41.2
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 1.1e-72 278.5 269 59.1
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 1.7e-70 271.2 281 56.9
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 2.2e-70 270.8 211 69.7
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 6.5e-70 269.2 507 41.0
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 5.5e-69 266.2 522 40.8
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 6.1e-68 262.7 263 55.9
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 4.0e-67 260.0 275 55.6
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 1.5e-66 258.1 249 62.2
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 1.7e-65 254.6 294 54.4
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 1.1e-61 241.9 515 37.3
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 4.2e-61 240.0 231 61.0
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 2.8e-60 237.3 254 53.5
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 4.0e-59 233.4 518 36.9
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 2.2e-57 227.6 515 35.7
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 6.3e-57 226.1 281 50.5
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 4.5e-55 219.9 517 35.2
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 6.6e-54 216.1 432 38.2
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 1.5e-53 214.9 507 35.1
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 5.6e-53 213.0 347 41.5
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 1.2e-52 211.8 512 34.6
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 3.6e-52 210.3 515 34.6
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 1.4e-51 208.4 248 47.2
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 8.9e-51 205.7 508 34.4
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 9.8e-50 202.2 268 47.4
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 4.7e-44 183.3 524 33.8
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 4.0e-43 180.3 269 45.4
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 1.6e-36 158.3 266 41.4
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 2.4e-27 127.9 515 28.0
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 2.9e-25 120.9 167 47.3
Nn2g10703 Nelumbo nucifera HOM05D005934 ORTHO05D005165 3.2e-24 117.5 86 73.3
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 7.8e-23 112.8 97 60.8
SalBow4G0998 Salvia bowleyana HOM05D011515 ORTHO05D005165 3.6e-20 104.0 88 63.6
SalBow4G2489 Salvia bowleyana HOM05D011515 ORTHO05D005165 2.4e-19 101.3 88 62.5
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 4.9e-17 93.6 83 62.7
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 4.9e-17 93.6 83 62.7
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 6.4e-17 93.2 195 39.0
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 1.1e-16 92.4 276 31.9
Atru.chr12.721 Acer truncatum HOM05D002519 ORTHO05D005165 4.3e-13 80.5 92 51.1
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 9.6e-13 79.3 49 81.6
Cre12.g546300 Chlamydomonas reinhardtii HOM05D005934 ORTHO05D005165 2.8e-12 77.8 237 31.2
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 2.4e-11 74.7 149 40.9
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 2.0e-10 71.6 151 39.1
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 4.2e-08 63.9 61 55.7
HPP92_006751 Vanilla planifolia HOM05D005934 ORTHO05D005165 3.9e-06 57.4 119 42.0


User provided reference genes

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