Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 2.0e-149 532.3 259 100.0
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 3.7e-74 282.3 231 63.2
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 1.2e-69 267.3 231 60.2
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 2.7e-69 266.2 232 59.5
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 1.8e-68 263.5 222 61.3
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 3.0e-68 262.7 233 59.2
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 5.1e-68 261.9 222 60.4
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 3.3e-67 259.2 219 63.5
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 9.6e-67 257.7 222 60.8
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 4.8e-66 255.4 234 59.0
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 6.2e-66 255.0 218 57.8
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 6.9e-65 251.5 222 59.5
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 6.9e-65 251.5 231 57.6
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 6.9e-65 251.5 213 61.0
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 9.0e-65 251.1 222 59.0
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 9.0e-65 251.1 231 57.6
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 1.2e-64 250.8 231 58.4
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 2.0e-64 250.0 222 57.7
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 2.6e-64 249.6 222 57.7
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 3.4e-64 249.2 219 59.8
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 7.6e-64 248.1 222 59.5
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 2.9e-63 246.1 219 59.8
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 3.8e-63 245.7 231 55.4
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 4.9e-63 245.4 234 56.0
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 3.2e-62 242.7 234 55.6
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 4.2e-62 242.3 220 59.5
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 7.1e-62 241.5 220 59.5
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 2.1e-61 240.0 220 59.5
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 3.5e-61 239.2 239 54.4
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 3.5e-61 239.2 233 54.5
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 6.0e-61 238.4 222 55.0
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 7.9e-61 238.0 235 55.3
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 1.0e-60 237.7 219 57.5
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 3.0e-60 236.1 222 55.0
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 3.0e-60 236.1 222 57.2
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 3.9e-60 235.7 222 54.5
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 3.9e-60 235.7 222 54.5
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 8.7e-60 234.6 222 56.8
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 1.5e-59 233.8 222 55.0
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.5e-59 233.8 231 53.2
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 4.3e-59 232.3 233 54.5
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 7.4e-59 231.5 233 53.6
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 1.6e-58 230.3 222 55.0
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 2.2e-58 229.9 225 54.7
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 2.8e-58 229.6 245 53.1
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 3.7e-58 229.2 246 51.6
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 4.8e-58 228.8 225 54.2
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 4.8e-58 228.8 245 49.8
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 6.3e-58 228.4 249 53.4
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 8.2e-58 228.0 222 56.8
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 8.2e-58 228.0 226 54.9
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 1.1e-57 227.6 219 55.3
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 1.4e-57 227.3 226 51.8
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 4.1e-57 225.7 234 52.1
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 6.9e-57 224.9 225 54.7
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 6.9e-57 224.9 234 53.0
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 2.0e-56 223.4 231 52.8
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 2.6e-56 223.0 234 51.7
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 7.7e-56 221.5 249 50.6
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 7.7e-56 221.5 230 52.2
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 2.2e-55 219.9 234 52.6
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 2.2e-55 219.9 238 51.7
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 3.8e-55 219.2 237 50.6
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 1.9e-54 216.9 236 53.0
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 1.9e-54 216.9 213 56.3
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 9.4e-54 214.5 232 50.0
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 1.2e-53 214.2 250 47.6
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 6.1e-53 211.8 231 50.2
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 1.8e-52 210.3 252 49.2
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 3.3e-51 206.1 219 48.9
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 4.3e-51 205.7 221 49.3
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 5.7e-51 205.3 233 50.2
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 1.3e-50 204.1 248 46.8
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 1.7e-50 203.8 213 52.1
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 2.2e-50 203.4 219 49.3
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 3.7e-50 202.6 222 51.8
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 6.3e-50 201.8 140 68.6
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 1.1e-49 201.1 226 50.9
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 1.1e-49 201.1 216 52.3
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 1.1e-49 201.1 280 44.3
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 1.1e-49 201.1 284 42.6
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 4.1e-49 199.1 219 48.4
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 5.3e-49 198.7 235 51.9
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 6.9e-49 198.4 220 50.0
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 2.0e-48 196.8 230 50.4
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 4.5e-48 195.7 247 47.8
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 4.5e-48 195.7 224 50.4
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 1.3e-47 194.1 220 47.7
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 5.0e-47 192.2 236 47.9
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 8.5e-47 191.4 241 46.9
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 1.4e-46 190.7 238 48.7
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 1.4e-46 190.7 240 46.7
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 3.2e-46 189.5 246 43.9
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 3.2e-46 189.5 262 41.2
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 9.4e-46 188.0 213 50.7
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 1.6e-45 187.2 241 46.5
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 1.6e-45 187.2 210 51.9
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 3.6e-45 186.0 203 51.2
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 6.1e-45 185.3 234 47.4
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 6.1e-45 185.3 233 47.6
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 6.1e-45 185.3 234 47.4
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 7.9e-45 184.9 234 47.4
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 1.0e-44 184.5 230 48.3
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 1.4e-44 184.1 228 47.4
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 1.8e-44 183.7 231 47.6
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 2.6e-43 179.9 139 66.2
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 7.4e-43 178.3 136 62.5
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 2.2e-42 176.8 225 40.9
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 2.2e-42 176.8 225 41.3
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 2.8e-42 176.4 230 41.3
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 2.8e-42 176.4 220 46.4
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 8.2e-42 174.9 220 40.5
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 2.4e-41 173.3 209 47.4
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 4.1e-41 172.6 115 69.6
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.5e-40 170.6 140 62.1
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 2.0e-40 170.2 189 50.8
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 3.5e-40 169.5 180 51.7
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 4.5e-40 169.1 193 47.7
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 7.7e-40 168.3 190 49.5
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.0e-39 167.9 215 42.8
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 1.3e-39 167.5 188 48.9
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 2.2e-39 166.8 196 47.4
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 4.2e-38 162.5 162 53.7
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 5.5e-38 162.2 181 48.1
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 7.2e-38 161.8 298 35.9
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 2.1e-37 160.2 221 43.4
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.1e-37 160.2 235 40.0
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 4.7e-37 159.1 221 40.7
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.3e-36 156.8 221 42.5
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 3.7e-34 149.4 196 42.3
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 4.8e-34 149.1 225 38.2
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 4.2e-30 136.0 226 33.6
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 5.5e-30 135.6 149 49.7
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 3.4e-27 126.3 158 46.2
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 9.7e-27 124.8 221 35.3
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 4.1e-25 119.4 197 39.6
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 4.1e-25 119.4 172 41.9
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 3.5e-24 116.3 138 51.4
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 7.7e-24 115.2 177 37.3
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 2.2e-23 113.6 150 38.7
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 5.5e-22 109.0 208 30.8
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 8.3e-18 95.1 120 45.8
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 4.5e-16 89.4 72 65.3
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 4.0e-12 76.3 140 30.7
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 2.6e-11 73.6 42 81.0
MBI11_g13051_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 8.3e-10 68.6 60 55.0


User provided reference genes

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