Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0757G210 Amborella trichopoda HOM05D006425 ORTHO05D007312 0.0e+00 2130.9 1078 100.0
MBI12_g20265_MAGBIO Magnolia biondii HOM05D006425 ORTHO05D007312 0.0e+00 1496.1 1090 71.2
TAR629G2477 Trochodendron aralioides HOM05D006425 ORTHO05D007312 0.0e+00 1470.3 1084 70.0
Potri.014G101400 Populus trichocarpa HOM05D006425 ORTHO05D007312 0.0e+00 1446.4 1078 67.4
Nn1g00347 Nelumbo nucifera HOM05D006425 ORTHO05D007312 0.0e+00 1444.1 1085 68.9
PSO782G0220 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1442.9 1077 69.5
Sabra14G0074600 Salix brachista HOM05D006425 ORTHO05D007312 0.0e+00 1433.3 1084 66.8
PSO063G5968 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1421.8 1077 68.9
CSS0033565 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 0.0e+00 1420.6 1091 66.6
TWI23G0835 Tripterygium wilfordii HOM05D006425 ORTHO05D007312 0.0e+00 1416.0 1089 67.3
Aqoxy5G04315 Aquilegia oxysepala HOM05D006425 ORTHO05D007312 0.0e+00 1415.2 1073 67.0
MD07G1153800 Malus domestica HOM05D006425 ORTHO05D007312 0.0e+00 1412.5 1087 66.1
QL08p046032 Quercus lobata HOM05D006425 ORTHO05D007312 0.0e+00 1412.1 1076 67.6
Thecc.01G338700 Theobroma cacao HOM05D006425 ORTHO05D007312 0.0e+00 1404.8 1082 66.1
Atru.chr5.713 Acer truncatum HOM05D006425 ORTHO05D007312 0.0e+00 1404.0 1076 66.4
VMungo0540G0548 Vigna mungo HOM05D006425 ORTHO05D007312 0.0e+00 1403.3 1084 64.8
FvH4_7g17030 Fragaria vesca HOM05D006425 ORTHO05D007312 0.0e+00 1402.9 1088 65.8
arahy.Tifrunner.gnm1.ann1.V6VX4F Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1401.3 1108 64.1
Lj7C496T17 Lonicera japonica HOM05D006425 ORTHO05D007312 0.0e+00 1401.0 1093 67.5
Phvul.006G115200 Phaseolus vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1399.4 1087 65.0
Cfa003773 Carpinus fangiana HOM05D006425 ORTHO05D007312 0.0e+00 1398.3 1074 65.8
Cpa.g.sc139.7 Carica papaya HOM05D006425 ORTHO05D007312 0.0e+00 1394.4 1091 66.0
Lj1g0017915 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1394.4 1075 66.3
RcHm_v2.0_Chr1g0360431 Rosa chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1394.0 1084 65.6
Duzib138G0057 Durio zibethinus HOM05D006425 ORTHO05D007312 0.0e+00 1392.1 1086 65.2
Glyma.19G257700 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1391.7 1085 65.0
Glyma.03G259000 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1389.0 1084 64.8
Ca_09524_v3 Cicer arietinum L. HOM05D006425 ORTHO05D007312 0.0e+00 1385.2 1086 64.9
Manes.01G243600 Manihot esculenta HOM05D006425 ORTHO05D007312 0.0e+00 1385.2 1085 66.5
TPR.G4756 Trifolium pratense HOM05D006425 ORTHO05D007312 0.0e+00 1385.2 1085 63.5
Sed0010112 Sechium edule HOM05D006425 ORTHO05D007312 0.0e+00 1384.0 1078 64.6
FAN10G4300 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1383.2 1082 65.3
Haze_15687 Corylus avellana HOM05D006425 ORTHO05D007312 0.0e+00 1382.9 1107 64.3
FAN10G2644 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1382.5 1071 65.6
Psat3g001600 Pisum sativum HOM05D006425 ORTHO05D007312 0.0e+00 1379.4 1086 64.8
PGR102G0287 Punica granatum HOM05D006425 ORTHO05D007312 0.0e+00 1378.6 1086 64.7
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 0.0e+00 1377.8 1082 65.7
CsaV3_3G007870 Cucumis sativus L. HOM05D006425 ORTHO05D007312 0.0e+00 1376.3 1080 64.4
Eucgr.E03445 Eucalyptus grandis HOM05D006425 ORTHO05D007312 0.0e+00 1374.0 1083 65.2
CARHR001250 Cardamine hirsuta HOM05D006425 ORTHO05D007312 0.0e+00 1373.2 1069 66.9
Medtr7g117870 Medicago truncatula HOM05D006425 ORTHO05D007312 0.0e+00 1371.3 1086 64.5
arahy.Tifrunner.gnm1.ann1.GF075D Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1370.9 1115 63.1
Gorai.008G127000 Gossypium raimondii HOM05D006425 ORTHO05D007312 0.0e+00 1369.8 1074 65.5
Gohir.D12G117200 Gossypium hirsutum HOM05D006425 ORTHO05D007312 0.0e+00 1368.6 1074 65.5
THA.LOC104815884 Tarenaya hassleriana HOM05D006425 ORTHO05D007312 0.0e+00 1367.4 1075 65.7
Thhalv10006637m.g Eutrema salsugineum HOM05D006425 ORTHO05D007312 0.0e+00 1365.5 1076 65.9
Lalb_Chr04g0261441 Lupinus albus HOM05D006425 ORTHO05D007312 0.0e+00 1364.4 1079 64.2
FAN06G4481 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1364.0 1078 65.2
ECA236G2333 Erigeron canadensis HOM05D006425 ORTHO05D007312 0.0e+00 1362.8 1066 66.6
HanXRQChr04g0120411 Helianthus annuus HOM05D006425 ORTHO05D007312 0.0e+00 1360.1 1081 65.3
Cc02_g39660 Coffea canephora HOM05D006425 ORTHO05D007312 0.0e+00 1359.0 1085 64.3
AL1G11260 Arabidopsis lyrata HOM05D006425 ORTHO05D007312 0.0e+00 1355.5 1068 65.4
BolC8t52871H Brassica oleracea HOM05D006425 ORTHO05D007312 0.0e+00 1354.3 1069 64.5
Sp1g01070 Schrenkiella parvula HOM05D006425 ORTHO05D007312 0.0e+00 1354.3 1075 64.1
FAN06G3842 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1354.0 1076 64.5
FAN03G0670 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1353.2 1076 65.1
BraA09t42237Z Brassica rapa HOM05D006425 ORTHO05D007312 0.0e+00 1352.8 1083 64.5
FAN01G0442 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1352.0 1077 64.8
Carub.0008s1137 Capsella rubella HOM05D006425 ORTHO05D007312 0.0e+00 1350.9 1072 65.3
Rhsim07G0002300 Rhododendron simsii HOM05D006425 ORTHO05D007312 0.0e+00 1350.9 1088 66.1
Oeu007875.1 Olea europaea HOM05D006425 ORTHO05D007312 0.0e+00 1349.7 1087 64.1
CAN.G1415.13 Capsicum annuum HOM05D006425 ORTHO05D007312 0.0e+00 1347.8 1083 65.1
C08p53570 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1347.4 1075 64.1
PGSC0003DMG400000238 Solanum tuberosum HOM05D006425 ORTHO05D007312 0.0e+00 1345.9 1074 65.1
A09p69000 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1344.7 1081 63.7
COL.COLO4_06242 Corchorus olitorius HOM05D006425 ORTHO05D007312 0.0e+00 1342.4 1102 64.0
AUR62022731 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1339.7 1075 64.0
Sc13g0006630 Simmondsia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1338.9 1076 64.4
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 0.0e+00 1337.8 1069 65.8
HPP92_015094 Vanilla planifolia HOM05D006425 ORTHO05D007312 0.0e+00 1335.9 1066 62.9
Migut.B01889 Erythranthe guttata HOM05D006425 ORTHO05D007312 0.0e+00 1334.3 1075 64.1
Solyc01g096160.4 Solanum lycopersicum HOM05D006425 ORTHO05D007312 0.0e+00 1333.2 1072 64.6
AUR62004524 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1326.6 1072 63.6
Aa31LG1G10590 Aethionema arabicum HOM05D006425 ORTHO05D007312 0.0e+00 1323.1 1072 64.4
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 0.0e+00 1319.7 1078 64.1
Hund27175 Selenicereus undatus HOM05D006425 ORTHO05D007312 0.0e+00 1318.9 1087 63.7
Ah.05g179300 Amaranthus hybridus HOM05D006425 ORTHO05D007312 0.0e+00 1311.2 1073 64.2
MELO3C006005.2 Cucumis melo HOM05D006425 ORTHO05D007312 0.0e+00 1304.3 1068 63.2
ClCG05G000660 Citrullus lanatus HOM05D006425 ORTHO05D007312 0.0e+00 1295.8 1072 63.8
SGA_v2.0_scaffold22G09958 Striga asiatica HOM05D006425 ORTHO05D007312 0.0e+00 1289.6 1084 61.3
Os03g0115100 Oryza sativa ssp. japonica HOM05D006425 ORTHO05D007312 0.0e+00 1287.7 1065 62.4
Lsat_1_v5_gn_7_2761 Lactuca sativa HOM05D006425 ORTHO05D007312 0.0e+00 1278.5 1076 63.6
Peaxi162Scf00345g00024 Petunia axillaris HOM05D006425 ORTHO05D007312 0.0e+00 1276.5 1074 62.6
Nitab4.5_0006770g0030 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1269.6 1076 62.4
Zm00001eb001000 Zea mays HOM05D006425 ORTHO05D007312 0.0e+00 1268.8 1075 60.7
Ciclev10018702m.g Citrus clementina HOM05D006425 ORTHO05D007312 0.0e+00 1265.8 951 68.7
vmacro04289 Vaccinium macrocarpon HOM05D006425 ORTHO05D007312 0.0e+00 1243.0 1216 56.2
AT1G01220 Arabidopsis thaliana HOM05D006425 ORTHO05D007312 0.0e+00 1232.6 932 67.2
SalBow3G3533 Salvia bowleyana HOM05D006425 ORTHO05D007312 0.0e+00 1229.9 1127 58.1
SHI13064 Sapria himalayana HOM05D006425 ORTHO05D007312 0.0e+00 1189.1 1195 54.2
Lj1g0006712 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1184.5 961 63.8
unitig_899.g14792 Utricularia gibba HOM05D006425 ORTHO05D007312 7.4e-312 1074.3 1068 53.1
CiPaw.02G042200 Carya illinoinensis HOM05D006425 ORTHO05D007312 2.1e-301 1039.3 758 67.7
Mapoly0065s0064 Marchantia polymorpha HOM05D006425 ORTHO05D007312 1.5e-294 1016.5 1075 48.8
Prupe.2G192700 Prunus persica HOM05D006425 ORTHO05D007312 4.3e-294 1015.0 757 67.0
Actinidia07981 Actinidia chinensis HOM05D006425 ORTHO05D007312 9.6e-294 1013.8 1086 53.3
Nitab4.5_0000307g0050 Nicotiana tabacum HOM05D006425 ORTHO05D007312 9.6e-294 1013.8 965 57.6
EL10Ac1g00230 Beta vulgaris HOM05D006425 ORTHO05D007312 4.6e-280 968.4 756 65.2
Pp3c27_4880 Physcomitrium patens HOM05D006425 ORTHO05D007312 3.6e-277 958.7 1074 48.3
Gohir.A12G113700 Gossypium hirsutum HOM05D006425 ORTHO05D007312 1.7e-266 923.3 720 65.7
SEGI_19319 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 1.6e-253 880.2 712 64.9
AagrBONN_evm.TU.Sc2ySwM_368.2372 Anthoceros agrestis HOM05D006425 ORTHO05D007312 6.3e-237 825.1 1011 44.9
Actinidia20260 Actinidia chinensis HOM05D006425 ORTHO05D007312 3.7e-229 799.3 1010 49.6
Sopen01g039900 Solanum pennellii HOM05D006425 ORTHO05D007312 5.4e-212 742.3 614 63.4
BcaC07g42431 Brassica carinata HOM05D006425 ORTHO05D007312 9.8e-198 694.9 536 66.2
CBR_g42133 Chara braunii HOM05D006425 ORTHO05D007312 7.8e-195 685.3 1521 33.4
BcaC07g42430 Brassica carinata HOM05D006425 ORTHO05D007312 1.1e-175 621.7 509 62.5
Sed0002059 Sechium edule HOM05D006425 ORTHO05D007312 8.7e-170 602.1 646 51.4
Sopen01g039890 Solanum pennellii HOM05D006425 ORTHO05D007312 5.1e-146 523.1 400 67.0
Gohir.A12G113750 Gossypium hirsutum HOM05D006425 ORTHO05D007312 3.1e-111 407.5 338 64.2
Hma1.2p1_0180F.1_g079620 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 4.3e-68 264.2 190 69.5
MD01G1085000 Malus domestica HOM05D006425 ORTHO05D007312 1.9e-47 195.7 143 65.7
Hma1.2p1_0180F.1_g079630 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 2.6e-33 148.7 99 73.7
SEGI_38786 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 1.7e-24 119.4 61 85.2
Actinidia20216 Actinidia chinensis HOM05D006425 ORTHO05D007312 5.9e-17 94.4 54 79.6
VMungo0720G2246 Vigna mungo HOM05D006425 ORTHO05D007312 1.9e-15 89.4 65 63.1
SEGI_36326 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 2.6e-09 68.9 90 42.2
CSS0018706 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 1.0e-08 67.0 44 68.2
CSS0027474 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 1.0e-08 67.0 44 68.2
CSS0040683 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 1.9e-07 62.8 40 72.5
MCO11G284 Micromonas commoda HOM05D006425 ORTHO05D007312 3.2e-07 62.0 281 26.0
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 4.2e-07 61.6 71 46.5
TPR.G39590 Trifolium pratense HOM05D020190 ORTHO05D018030 4.2e-07 61.6 71 46.5
SMO361G0266 Selaginella moellendorffii HOM05D006425 ORTHO05D007312 1.6e-06 59.7 58 50.0


User provided reference genes

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