Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 0.0e+00 1480.7 912 100.0
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 3.5e-156 556.6 903 45.6
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 1.3e-153 548.1 891 43.8
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 2.8e-153 547.0 896 47.0
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 1.9e-141 507.7 900 43.7
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 2.5e-141 507.3 904 42.3
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 1.1e-138 498.4 915 40.4
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 9.7e-138 495.4 913 40.5
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 1.3e-137 495.0 917 40.3
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 2.5e-133 480.7 909 42.0
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 4.2e-133 479.9 919 39.4
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 3.6e-132 476.9 916 42.7
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 1.8e-131 474.6 911 38.6
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 1.3e-129 468.4 906 43.7
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 1.1e-128 465.3 922 40.8
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 4.1e-128 463.4 753 51.3
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 6.9e-128 462.6 916 42.9
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 2.6e-127 460.7 892 43.3
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 4.5e-127 459.9 899 41.0
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 1.0e-126 458.8 900 40.3
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 1.3e-126 458.4 913 39.8
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 2.2e-126 457.6 904 39.5
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 1.1e-125 455.3 905 39.2
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 1.4e-125 454.9 885 38.2
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 4.2e-125 453.4 823 40.8
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 9.4e-125 452.2 929 39.9
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 9.4e-125 452.2 866 41.9
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 9.4e-125 452.2 898 43.3
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 6.1e-124 449.5 927 38.3
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 6.1e-124 449.5 883 43.0
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 2.3e-123 447.6 919 41.8
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 5.2e-123 446.4 892 37.4
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 2.0e-122 444.5 910 38.9
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 3.3e-122 443.7 955 37.7
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 4.4e-122 443.4 889 41.4
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 8.2e-121 439.1 912 42.2
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 5.3e-120 436.4 931 40.2
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 7.0e-120 436.0 866 42.7
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 3.5e-119 433.7 899 37.6
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 5.9e-119 433.0 907 42.3
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 5.9e-119 433.0 899 37.5
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 5.9e-119 433.0 899 37.8
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 7.7e-119 432.6 934 40.1
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 7.7e-119 432.6 900 37.4
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 2.2e-118 431.0 903 41.2
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 2.9e-118 430.6 899 37.3
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 3.8e-118 430.3 891 41.2
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 3.8e-118 430.3 891 41.2
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 5.0e-118 429.9 900 36.2
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 1.1e-117 428.7 851 42.0
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 1.1e-117 428.7 881 37.9
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 2.5e-117 427.6 886 42.3
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 4.2e-117 426.8 901 37.1
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 2.1e-116 424.5 802 43.0
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 4.7e-116 423.3 893 42.0
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 6.1e-116 422.9 919 39.6
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 8.0e-116 422.5 917 38.2
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 1.4e-115 421.8 893 36.2
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 3.0e-115 420.6 921 39.5
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 6.7e-115 419.5 942 38.2
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 6.7e-115 419.5 906 37.4
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 8.8e-115 419.1 907 38.0
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 9.7e-114 415.6 930 37.2
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 3.7e-113 413.7 910 37.8
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 8.2e-113 412.5 921 38.8
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 1.8e-112 411.4 907 40.5
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 2.2e-110 404.4 856 37.4
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 2.2e-110 404.4 921 41.0
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 2.2e-110 404.4 889 35.5
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 5.0e-110 403.3 894 36.8
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 1.1e-109 402.1 910 36.9
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 1.5e-109 401.7 869 40.2
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 4.2e-109 400.2 902 39.6
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 7.2e-109 399.4 874 36.2
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 1.6e-108 398.3 821 41.4
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 4.0e-107 393.7 884 40.4
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 4.0e-107 393.7 927 39.2
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 8.8e-107 392.5 900 38.7
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 1.5e-106 391.7 885 40.8
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 1.5e-106 391.7 792 42.6
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 1.3e-105 388.7 909 37.5
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 2.8e-105 387.5 444 53.4
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 3.7e-105 387.1 831 40.1
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 8.3e-105 386.0 917 35.9
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 2.4e-104 384.4 889 39.1
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 3.5e-103 380.6 831 39.7
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 4.5e-103 380.2 634 41.5
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 6.5e-102 376.3 923 36.0
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 6.5e-102 376.3 974 34.4
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 1.5e-101 375.2 905 35.6
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 2.5e-101 374.4 569 43.2
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 4.2e-101 373.6 846 38.2
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 1.6e-100 371.7 889 38.0
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 6.1e-100 369.8 884 36.2
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 2.3e-99 367.9 906 38.6
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 1.5e-98 365.2 881 37.9
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 8.3e-97 359.4 903 36.5
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 1.1e-96 359.0 904 36.5
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 9.2e-96 355.9 910 34.7
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.2e-95 355.5 750 38.8
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 1.7e-94 351.7 900 36.4
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 5.0e-94 350.1 906 36.6
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 1.9e-93 348.2 969 32.5
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 4.7e-92 343.6 901 36.8
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 1.8e-91 341.7 959 34.2
AagrBONN_evm.TU.Sc2ySwM_362.1643 Anthoceros agrestis HOM05D004001 ORTHO05D004559 3.0e-91 340.9 653 45.2
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 5.7e-90 336.7 928 32.3
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 7.5e-90 336.3 886 33.0
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 3.0e-86 324.3 851 32.7
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 2.8e-84 317.8 487 41.3
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 1.0e-78 299.3 688 39.7
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 2.3e-78 298.1 785 34.6
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 8.6e-78 296.2 913 36.4
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 4.3e-77 293.9 923 32.2
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 6.8e-75 286.6 916 35.8
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 2.7e-71 274.6 845 29.9
Mapoly0005s0201 Marchantia polymorpha HOM05D004001 ORTHO05D004559 8.1e-60 236.5 919 33.6
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 5.2e-59 233.8 232 52.6
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 2.1e-55 221.9 438 37.0
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 2.8e-52 211.5 591 33.7
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 4.8e-52 210.7 400 37.0
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.4e-48 198.4 403 38.0
Pp3c5_28010 Physcomitrium patens HOM05D004001 ORTHO05D004559 3.1e-43 181.4 990 28.7
Actinidia33460 Actinidia chinensis HOM05D004001 ORTHO05D004559 1.3e-38 166.0 185 51.9
Mapoly0048s0074 Marchantia polymorpha HOM05D004001 ORTHO05D004559 1.5e-37 162.5 229 40.2
CBR_g40168 Chara braunii HOM05D004001 ORTHO05D004559 1.3e-33 149.4 645 28.1
vmacro13387 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 2.9e-33 148.3 153 52.3
SEGI_21780 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 5.5e-32 144.1 642 31.8
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 1.6e-31 142.5 214 44.4
VMungo1383G3044 Vigna mungo HOM05D004001 ORTHO05D004559 7.9e-31 140.2 174 44.8
DCAR_006876 Daucus carota HOM05D004001 ORTHO05D004559 9.3e-24 116.7 431 31.6
arahy.Tifrunner.gnm1.ann1.K6PBMX Arachis hypogaea HOM05D004001 ORTHO05D004559 2.0e-18 99.0 157 42.7
arahy.Tifrunner.gnm1.ann1.LXQN6Z Arachis hypogaea HOM05D004001 ORTHO05D004559 1.4e-16 92.8 183 37.2
Hma1.2p1_1793F.1_g302630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 4.2e-16 91.3 99 47.5
Hma1.2p1_1793F.1_g302640 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 4.2e-16 91.3 98 51.0
Hma1.2p1_3528F.1_g336625 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 4.2e-16 91.3 99 47.5
arahy.Tifrunner.gnm1.ann1.7YWS89 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.7e-15 88.6 183 49.7
SMO147G0240 Selaginella moellendorffii HOM05D004001 ORTHO05D004559 6.1e-15 87.4 316 28.2
VMungo1383G1498 Vigna mungo HOM05D004001 ORTHO05D004559 1.0e-14 86.7 410 28.8
arahy.Tifrunner.gnm1.ann1.2V3ERI Arachis hypogaea HOM05D004001 ORTHO05D004559 1.5e-13 82.8 190 55.8
arahy.Tifrunner.gnm1.ann1.63QVJR Arachis hypogaea HOM05D004001 ORTHO05D004559 2.0e-13 82.4 199 54.3
CSS0022656 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 1.7e-12 79.3 391 28.9
arahy.Tifrunner.gnm1.ann1.DK59KL Arachis hypogaea HOM05D004001 ORTHO05D004559 2.8e-12 78.6 141 38.3
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 2.4e-11 75.5 157 38.2
TWI56G0444 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 2.4e-11 75.5 156 35.9
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 1.2e-10 73.2 123 39.0
vmacro22718 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 2.9e-09 68.6 62 61.3
TWI56G0921 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 7.2e-08 63.9 148 32.4
TWI56G1146 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 7.2e-08 63.9 148 32.4
TWI56G1317 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 7.2e-08 63.9 148 32.4
Rhsim07G0026800 Rhododendron simsii HOM05D004001 ORTHO05D004559 8.0e-07 60.5 45 75.6
Dinv00153 Davidia involucrata HOM05D004001 ORTHO05D004559 1.0e-06 60.1 70 41.4
Psat6g122920 Pisum sativum HOM05D004001 ORTHO05D004559 3.0e-06 58.5 42 69.0
Dinv00152 Davidia involucrata HOM05D026811 ORTHO05D004559 3.9e-06 58.2 55 45.5
arahy.Tifrunner.gnm1.ann1.8X1DD2 Arachis hypogaea HOM05D004001 ORTHO05D004559 5.2e-06 57.8 100 40.0
BcaC07g37285 Brassica carinata HOM05D025803 ORTHO05D027242 5.2e-06 57.8 47 61.7


User provided reference genes

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