Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 0.0e+00 2915.9 1651 100.0
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 2.0e-210 737.6 1823 36.4
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 1.4e-190 671.8 1784 36.4
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 1.0e-182 645.6 1720 35.6
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 7.8e-162 576.2 1670 34.0
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 2.2e-156 558.1 1784 34.1
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 4.1e-155 553.9 1690 33.5
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 4.1e-155 553.9 1780 33.8
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 2.4e-150 538.1 1650 33.8
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 2.7e-146 524.6 1605 33.3
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 1.7e-145 521.9 1725 31.7
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 1.1e-144 519.2 1693 33.0
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 5.6e-144 516.9 1670 33.0
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 3.6e-143 514.2 1759 32.7
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 1.5e-141 508.8 1676 32.7
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 1.6e-138 498.8 1691 32.4
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 2.1e-138 498.4 1691 32.3
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 3.5e-138 497.7 1704 32.5
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 2.3e-137 495.0 1663 33.4
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 5.1e-137 493.8 1673 32.6
MBI10_g44386_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 7.4e-136 490.0 1509 33.5
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 2.1e-135 488.4 1689 31.7
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 6.2e-135 486.9 1681 31.8
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 8.1e-135 486.5 1688 32.2
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 2.4e-134 485.0 1632 33.1
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 9.0e-134 483.0 1690 31.3
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 2.4e-131 474.9 1672 32.4
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 1.6e-130 472.2 1705 31.8
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 7.9e-130 469.9 1750 31.1
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 8.7e-129 466.5 1688 32.6
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 8.7e-129 466.5 1640 31.3
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 1.1e-128 466.1 1644 31.9
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 1.9e-128 465.3 1689 32.1
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 2.5e-128 464.9 1704 31.5
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 3.1e-126 458.0 1699 31.6
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 1.0e-124 453.0 1678 31.7
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 4.9e-124 450.7 1685 30.7
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 2.1e-122 445.3 1682 31.0
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 4.6e-122 444.1 1674 31.1
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 8.7e-121 439.9 1689 32.6
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 1.9e-120 438.7 1671 31.2
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 2.5e-120 438.3 1680 30.2
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 9.6e-120 436.4 1700 30.2
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 2.1e-119 435.3 1672 31.1
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 3.7e-119 434.5 1722 30.3
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 1.1e-118 433.0 1673 31.6
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.8e-118 432.2 1643 30.2
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 6.9e-118 430.3 1660 30.8
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 6.9e-118 430.3 1666 30.6
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 1.2e-117 429.5 1653 31.5
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 4.5e-117 427.6 1802 30.1
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 1.4e-115 422.5 1670 30.7
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 3.2e-115 421.4 1669 29.8
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 5.5e-115 420.6 1666 30.3
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 2.7e-114 418.3 1662 30.3
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 4.6e-114 417.5 1001 37.4
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 9.7e-112 409.8 1677 29.9
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 9.7e-112 409.8 1694 30.2
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 1.1e-110 406.4 1659 30.7
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 1.8e-110 405.6 1683 30.7
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 2.6e-109 401.7 1651 29.8
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 1.7e-108 399.1 1668 30.9
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 6.5e-108 397.1 1687 30.3
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 6.5e-108 397.1 1669 30.1
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 1.9e-107 395.6 1674 29.8
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 2.5e-107 395.2 1662 30.7
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 3.2e-107 394.8 1628 30.4
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 1.2e-106 392.9 1688 29.6
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 2.1e-106 392.1 1380 31.4
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 2.7e-106 391.7 1678 29.9
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 6.1e-106 390.6 1603 31.1
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 1.5e-104 386.0 1633 30.1
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 1.5e-104 386.0 1688 29.6
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 9.7e-104 383.3 1676 28.9
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 1.7e-100 372.5 1699 29.0
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 1.7e-100 372.5 1254 32.1
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.7e-100 372.5 1639 29.2
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 2.2e-100 372.1 1678 29.1
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 2.9e-100 371.7 1716 28.8
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 1.4e-99 369.4 1705 30.4
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 4.2e-99 367.9 1704 29.5
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 7.9e-98 363.6 1695 28.3
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 2.6e-96 358.6 1688 29.3
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 4.8e-95 354.4 957 35.1
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 4.2e-91 341.3 1630 29.3
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 4.2e-91 341.3 1617 29.3
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 9.4e-91 340.1 1712 28.5
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 2.3e-89 335.5 1336 32.3
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 1.4e-86 326.2 1632 28.8
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 1.2e-85 323.2 1689 27.8
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 5.9e-85 320.9 1618 28.8
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 7.7e-85 320.5 1684 27.9
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 3.8e-84 318.2 537 42.6
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 1.4e-81 309.7 1633 27.9
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 4.0e-81 308.1 1632 27.8
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 1.5e-80 306.2 1634 28.3
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 2.6e-80 305.4 1640 27.6
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 4.1e-78 298.1 1619 28.2
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 3.5e-77 295.0 1241 29.2
Ciclev10018497m.g Citrus clementina HOM05D004430 ORTHO05D005088 5.9e-77 294.3 1429 29.7
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 1.0e-76 293.5 1335 29.7
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 1.7e-76 292.7 1654 27.8
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 2.9e-76 292.0 1667 27.7
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 3.8e-76 291.6 1623 27.4
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 6.5e-76 290.8 1624 27.5
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 6.5e-76 290.8 1300 29.8
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 1.5e-75 289.7 1694 27.7
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 3.2e-75 288.5 1642 27.7
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 1.2e-74 286.6 1527 27.8
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 3.0e-73 282.0 1646 29.3
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 5.2e-73 281.2 1263 29.5
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 2.6e-72 278.9 1660 27.3
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 6.3e-71 274.2 1610 27.6
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 7.0e-70 270.8 379 47.0
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 2.7e-69 268.9 1634 26.6
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 5.9e-69 267.7 846 32.3
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 5.9e-69 267.7 1631 26.5
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 1.7e-68 266.2 1322 28.7
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 1.5e-67 263.1 1630 26.6
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 3.3e-67 261.9 1544 27.2
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 1.6e-66 259.6 551 37.6
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 4.4e-64 251.5 1597 25.7
CiPaw.11G023400 Carya illinoinensis HOM05D004430 ORTHO05D005088 7.5e-64 250.8 1596 26.9
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 3.5e-61 241.9 223 63.7
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.7e-60 239.6 1371 27.8
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 6.8e-57 227.6 1309 27.2
CiPaw.12G028500 Carya illinoinensis HOM05D004430 ORTHO05D005088 2.9e-55 222.2 1421 27.5
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 8.3e-55 220.7 181 70.7
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 5.4e-54 218.0 1582 26.1
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 2.0e-53 216.1 202 63.9
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 3.4e-48 198.7 1485 27.4
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 7.5e-48 197.6 225 54.7
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.0e-44 187.2 214 55.1
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 1.1e-43 183.7 1617 26.2
PGSC0003DMG402018164 Solanum tuberosum HOM05D004430 ORTHO05D005088 1.4e-38 166.8 1416 25.6
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 4.3e-35 155.2 1318 25.2
Hma1.2p1_0046F.1_g026730 Hydrangea macrophylla HOM05D004430 ORTHO05D005088 2.1e-34 152.9 1226 26.9
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 1.7e-31 143.3 444 32.7
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 8.4e-31 141.0 148 58.1
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 2.1e-29 136.3 1502 24.4
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 5.3e-25 121.7 95 68.4
AagrBONN_evm.TU.Sc2ySwM_344.4397 Anthoceros agrestis HOM05D004430 ORTHO05D005088 5.8e-24 118.2 1530 25.0
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 1.9e-22 113.2 253 38.7
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 5.4e-22 111.7 1408 24.6
Actinidia33085 Actinidia chinensis HOM05D004430 ORTHO05D005088 3.5e-21 109.0 679 27.1
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 6.9e-17 94.7 441 30.2
Psat2g086200 Pisum sativum HOM05D004430 ORTHO05D005088 5.6e-11 75.1 209 35.9
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 1.3e-10 73.9 924 25.0
Actinidia19111 Actinidia chinensis HOM05D004430 ORTHO05D005088 2.1e-10 73.2 499 26.5
Psat2g086240 Pisum sativum HOM05D004430 ORTHO05D005088 3.7e-10 72.4 158 41.8
Psat2g098600 Pisum sativum HOM05D003093 ORTHO05D005088 6.9e-09 68.2 136 42.6
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 9.0e-09 67.8 681 23.8
Actinidia33086 Actinidia chinensis HOM05D004430 ORTHO05D005088 3.8e-07 62.4 387 27.1
CDE05G0388 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 4.2e-06 58.9 114 37.7
TAR629G1829 Trochodendron aralioides HOM05D003072 ORTHO05D008464 4.2e-06 58.9 98 43.9


User provided reference genes

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