Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0757G136 Amborella trichopoda HOM05D003871 ORTHO05D004621 7.2e-80 300.4 143 100.0
ATR0757G035 Amborella trichopoda HOM05D003871 ORTHO05D004621 4.6e-18 95.1 76 60.5
CSS0031493 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 2.6e-13 79.3 77 54.5
CSS0038711 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 2.6e-13 79.3 77 54.5
TAR374G1595 Trochodendron aralioides HOM05D003871 ORTHO05D004621 5.8e-13 78.2 76 52.6
Dinv43765 Davidia involucrata HOM05D003871 ORTHO05D004621 2.2e-12 76.3 78 51.3
Lj7C518G12 Lonicera japonica HOM05D003871 ORTHO05D004621 8.3e-12 74.3 82 48.8
Sed0001471 Sechium edule HOM05D003871 ORTHO05D004621 1.1e-11 73.9 80 47.5
Lsat_1_v5_gn_9_24280 Lactuca sativa HOM05D003871 ORTHO05D004621 1.4e-11 73.6 88 44.3
vmacro13332 Vaccinium macrocarpon HOM05D003871 ORTHO05D004621 1.4e-11 73.6 76 55.3
Atru.chr5.417 Acer truncatum HOM05D003871 ORTHO05D004621 2.4e-11 72.8 80 48.8
Dinv16518 Davidia involucrata HOM05D003871 ORTHO05D004621 2.4e-11 72.8 77 49.4
Rhsim07G0020500 Rhododendron simsii HOM05D003871 ORTHO05D004621 2.4e-11 72.8 77 53.2
TWI23G1177 Tripterygium wilfordii HOM05D003871 ORTHO05D004621 2.4e-11 72.8 76 51.3
TWI14G1012 Tripterygium wilfordii HOM05D003871 ORTHO05D004621 3.2e-11 72.4 76 50.0
Rhsim01G0153400 Rhododendron simsii HOM05D003871 ORTHO05D004621 4.1e-11 72.0 77 51.9
Cc02_g37360 Coffea canephora HOM05D003871 ORTHO05D004621 7.1e-11 71.2 52 65.4
Ciclev10020177m.g Citrus clementina HOM05D003871 ORTHO05D004621 9.2e-11 70.9 77 49.4
CSS0026628 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 1.2e-10 70.5 77 49.4
CSS0039371 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 1.2e-10 70.5 77 49.4
Gohir.D11G089800 Gossypium hirsutum HOM05D003871 ORTHO05D004621 1.2e-10 70.5 52 63.5
Gorai.007G095800 Gossypium raimondii HOM05D003871 ORTHO05D004621 1.2e-10 70.5 52 63.5
MELO3C006142.2 Cucumis melo HOM05D003871 ORTHO05D004621 1.6e-10 70.1 83 49.4
Gohir.A11G085600 Gossypium hirsutum HOM05D003871 ORTHO05D004621 1.6e-10 70.1 52 63.5
CsaV3_3G009220 Cucumis sativus L. HOM05D003871 ORTHO05D004621 2.1e-10 69.7 83 49.4
Lsat_1_v5_gn_4_37061 Lactuca sativa HOM05D003871 ORTHO05D004621 2.1e-10 69.7 85 44.7
AUR62004300 Chenopodium quinoa HOM05D003871 ORTHO05D004621 2.7e-10 69.3 78 52.6
Nn1g01381 Nelumbo nucifera HOM05D003871 ORTHO05D004621 2.7e-10 69.3 80 48.8
PGR042G2189 Punica granatum HOM05D003871 ORTHO05D004621 3.5e-10 68.9 62 54.8
Sopen01g037420 Solanum pennellii HOM05D003871 ORTHO05D004621 3.5e-10 68.9 79 46.8
vmacro20965 Vaccinium macrocarpon HOM05D003871 ORTHO05D004621 3.5e-10 68.9 70 54.3
CANSAT56G3752 Cannabis sativa HOM05D003871 ORTHO05D004621 4.6e-10 68.6 78 48.7
COL.COLO4_12614 Corchorus olitorius HOM05D003871 ORTHO05D004621 4.6e-10 68.6 52 61.5
Duzib138G1891 Durio zibethinus HOM05D003871 ORTHO05D004621 4.6e-10 68.6 52 61.5
GSVIVG01027510001 Vitis vinifera HOM05D003871 ORTHO05D004621 4.6e-10 68.6 76 50.0
EL10Ac1g00989 Beta vulgaris HOM05D003871 ORTHO05D004621 6.0e-10 68.2 77 49.4
Ca_07858_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 6.0e-10 68.2 79 49.4
Duzib133G0086 Durio zibethinus HOM05D003871 ORTHO05D004621 6.0e-10 68.2 52 63.5
Hund16957 Selenicereus undatus HOM05D003871 ORTHO05D004621 6.0e-10 68.2 62 56.5
TAR375G0585 Trochodendron aralioides HOM05D003871 ORTHO05D004621 6.0e-10 68.2 69 52.2
Sp5g02240 Schrenkiella parvula HOM05D003871 ORTHO05D004621 7.8e-10 67.8 80 46.2
Manes.05G039500 Manihot esculenta HOM05D003871 ORTHO05D004621 1.0e-09 67.4 52 61.5
Aqoxy7G00418 Aquilegia oxysepala HOM05D003871 ORTHO05D004621 1.3e-09 67.0 70 50.0
AL5G43380 Arabidopsis lyrata HOM05D003871 ORTHO05D004621 1.3e-09 67.0 81 48.1
Gohir.D12G107500 Gossypium hirsutum HOM05D003871 ORTHO05D004621 1.3e-09 67.0 52 63.5
Gorai.008G117100 Gossypium raimondii HOM05D003871 ORTHO05D004621 1.3e-09 67.0 52 63.5
Nitab4.5_0004973g0020 Nicotiana tabacum HOM05D003871 ORTHO05D004621 1.3e-09 67.0 79 45.6
Sed0018711 Sechium edule HOM05D003871 ORTHO05D004621 1.3e-09 67.0 83 45.8
THA.LOC104802015 Tarenaya hassleriana HOM05D003871 ORTHO05D004621 1.3e-09 67.0 53 64.2
Thecc.01G366900 Theobroma cacao HOM05D003871 ORTHO05D004621 1.3e-09 67.0 52 59.6
Actinidia38295 Actinidia chinensis HOM05D003871 ORTHO05D004621 1.7e-09 66.6 75 48.0
BcaB02g07388 Brassica carinata HOM05D003871 ORTHO05D004621 1.7e-09 66.6 80 46.2
Thhalv10005978m.g Eutrema salsugineum HOM05D003871 ORTHO05D004621 1.7e-09 66.6 80 46.2
Gohir.A05G281600 Gossypium hirsutum HOM05D003871 ORTHO05D004621 1.7e-09 66.6 52 59.6
Hma1.2p1_0033F.1_g020520 Hydrangea macrophylla HOM05D003871 ORTHO05D004621 1.7e-09 66.6 84 44.0
Solyc01g091650.3 Solanum lycopersicum HOM05D003871 ORTHO05D004621 1.7e-09 66.6 52 61.5
Carub.0005s2779 Capsella rubella HOM05D003871 ORTHO05D004621 2.3e-09 66.2 80 45.0
AUR62022749 Chenopodium quinoa HOM05D000087 ORTHO05D004621 2.3e-09 66.2 78 51.3
AT3G61140 Arabidopsis thaliana HOM05D003871 ORTHO05D004621 3.0e-09 65.9 80 45.0
MSTRG.4874 Avicennia marina HOM05D003871 ORTHO05D004621 3.0e-09 65.9 76 48.7
FAN10G0206 Fragaria x ananassa HOM05D003871 ORTHO05D004621 3.0e-09 65.9 85 49.4
Gohir.A12G104100 Gossypium hirsutum HOM05D003871 ORTHO05D004621 3.0e-09 65.9 52 61.5
Peaxi162Scf00021g00920 Petunia axillaris HOM05D003871 ORTHO05D004621 3.0e-09 65.9 81 46.9
Psat3g113760 Pisum sativum HOM05D003871 ORTHO05D004621 3.0e-09 65.9 79 46.8
arahy.Tifrunner.gnm1.ann1.I68A9W Arachis hypogaea HOM05D003871 ORTHO05D004621 5.1e-09 65.1 64 51.6
arahy.Tifrunner.gnm1.ann1.WVA4TF Arachis hypogaea HOM05D003871 ORTHO05D004621 5.1e-09 65.1 64 51.6
BcaC07g42655 Brassica carinata HOM05D003871 ORTHO05D004621 5.1e-09 65.1 63 54.0
CAN.G170.26 Capsicum annuum HOM05D003871 ORTHO05D004621 5.1e-09 65.1 52 61.5
Nitab4.5_0005109g0020 Nicotiana tabacum HOM05D003871 ORTHO05D004621 5.1e-09 65.1 52 59.6
Gohir.A06G193200 Gossypium hirsutum HOM05D003871 ORTHO05D004621 6.6e-09 64.7 52 59.6
HanXRQChr17g0560011 Helianthus annuus HOM05D003871 ORTHO05D004621 6.6e-09 64.7 52 57.7
TPR.G17571 Trifolium pratense HOM05D003871 ORTHO05D004621 6.6e-09 64.7 77 48.1
BcaC08g45104 Brassica carinata HOM05D003871 ORTHO05D004621 8.6e-09 64.3 63 54.0
A07p25320 Brassica napus HOM05D003871 ORTHO05D004621 8.6e-09 64.3 63 54.0
C06p27130 Brassica napus HOM05D003871 ORTHO05D004621 8.6e-09 64.3 63 54.0
BolC6t37886H Brassica oleracea HOM05D003871 ORTHO05D004621 8.6e-09 64.3 63 54.0
Haze_15212 Corylus avellana HOM05D003871 ORTHO05D004621 8.6e-09 64.3 63 52.4
Hund27317 Selenicereus undatus HOM05D003871 ORTHO05D004621 8.6e-09 64.3 56 58.9
Sc23g0003210 Simmondsia chinensis HOM05D003871 ORTHO05D004621 8.6e-09 64.3 53 62.3
PGSC0003DMG400027768 Solanum tuberosum HOM05D003871 ORTHO05D004621 8.6e-09 64.3 79 45.6
Actinidia32928 Actinidia chinensis HOM05D003871 ORTHO05D004621 1.1e-08 63.9 73 47.9
Aa31LG10G15210 Aethionema arabicum HOM05D003871 ORTHO05D004621 1.1e-08 63.9 80 45.0
RcHm_v2.0_Chr1g0352641 Rosa chinensis HOM05D003871 ORTHO05D004621 1.1e-08 63.9 90 45.6
FvH4_7g13330 Fragaria vesca HOM05D003871 ORTHO05D004621 1.5e-08 63.5 85 48.2
FAN01G1876 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.5e-08 63.5 85 48.2
FAN06G4052 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.5e-08 63.5 85 48.2
SGA_v2.0_scaffold95G28865 Striga asiatica HOM05D003871 ORTHO05D004621 1.5e-08 63.5 75 46.7
BcaC07g40617 Brassica carinata HOM05D003871 ORTHO05D004621 1.9e-08 63.2 63 52.4
FAN03G3137 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.9e-08 63.2 85 47.1
FAN06G3893 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.9e-08 63.2 85 48.2
MBI12_g36508_MAGBIO Magnolia biondii HOM05D003871 ORTHO05D004621 1.9e-08 63.2 114 40.4
Phvul.010G090500 Phaseolus vulgaris HOM05D003871 ORTHO05D004621 1.9e-08 63.2 59 52.5
A09p53200 Brassica napus HOM05D003871 ORTHO05D004621 2.5e-08 62.8 64 51.6
BraA09t40745Z Brassica rapa HOM05D003871 ORTHO05D004621 2.5e-08 62.8 64 51.6
Psat4g151960 Pisum sativum HOM05D003871 ORTHO05D004621 2.5e-08 62.8 77 48.1
VMungo0331G1218 Vigna mungo HOM05D003871 ORTHO05D004621 2.5e-08 62.8 59 52.5
Ca_23740_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 3.3e-08 62.4 59 50.8
Ca_23745_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 3.3e-08 62.4 59 50.8
ClCG05G001830 Citrullus lanatus HOM05D003871 ORTHO05D004621 3.3e-08 62.4 83 43.4
Glyma.03G016800 Glycine max HOM05D003871 ORTHO05D004621 3.3e-08 62.4 59 50.8
Lsat_1_v5_gn_8_32720 Lactuca sativa HOM05D003110 ORTHO05D003585 3.3e-08 62.4 85 41.2
C08p35990 Brassica napus HOM05D003871 ORTHO05D004621 4.3e-08 62.0 63 49.2
BolC8t51181H Brassica oleracea HOM05D003871 ORTHO05D004621 4.3e-08 62.0 63 49.2
CDE11G1114 Ceratophyllum demersum HOM05D003871 ORTHO05D004621 4.3e-08 62.0 76 46.1
unitig_22.g5361 Utricularia gibba HOM05D003871 ORTHO05D004621 4.3e-08 62.0 88 38.6
CDE02G2895 Ceratophyllum demersum HOM05D003871 ORTHO05D004621 5.6e-08 61.6 76 44.7
Glyma.07G077100 Glycine max HOM05D003871 ORTHO05D004621 5.6e-08 61.6 59 50.8
CARHR171420 Cardamine hirsuta HOM05D003871 ORTHO05D004621 7.3e-08 61.2 80 43.8
CiPaw.02G026100 Carya illinoinensis HOM05D003871 ORTHO05D004621 7.3e-08 61.2 54 59.3
Prupe.2G156700 Prunus persica HOM05D003871 ORTHO05D004621 7.3e-08 61.2 84 45.2
TPR.G37846 Trifolium pratense HOM05D003871 ORTHO05D004621 7.3e-08 61.2 82 42.7
HanXRQChr16g0523641 Helianthus annuus HOM05D003871 ORTHO05D004621 9.5e-08 60.8 52 55.8
Lj3g0009639 Lotus japonicus HOM05D003871 ORTHO05D004621 9.5e-08 60.8 59 52.5
PSO782G3116 Papaver somniferum HOM05D003871 ORTHO05D004621 9.5e-08 60.8 78 42.3
Migut.B01700 Erythranthe guttata HOM05D003871 ORTHO05D004621 1.2e-07 60.5 52 57.7
Lalb_Chr17g0339991 Lupinus albus HOM05D003871 ORTHO05D004621 1.2e-07 60.5 65 47.7
PSO478G4452 Papaver somniferum HOM05D003871 ORTHO05D004621 1.2e-07 60.5 78 41.0
PSO782G0235 Papaver somniferum HOM05D003871 ORTHO05D004621 1.2e-07 60.5 78 42.3
FAN10G4186 Fragaria x ananassa HOM05D003871 ORTHO05D004621 1.6e-07 60.1 85 47.1
CiPaw.02G026000 Carya illinoinensis HOM05D003871 ORTHO05D004621 2.8e-07 59.3 54 57.4
MD07G1127800 Malus domestica HOM05D003871 ORTHO05D004621 3.6e-07 58.9 79 45.6
arahy.Tifrunner.gnm1.ann1.6U8ZH2 Arachis hypogaea HOM05D003871 ORTHO05D004621 4.7e-07 58.5 67 47.8
arahy.Tifrunner.gnm1.ann1.AB99XC Arachis hypogaea HOM05D003871 ORTHO05D004621 4.7e-07 58.5 67 47.8
SalBow3G3192 Salvia bowleyana HOM05D003871 ORTHO05D004621 4.7e-07 58.5 52 55.8
SGA_v2.0_scaffold153G37076 Striga asiatica HOM05D003871 ORTHO05D004621 8.1e-07 57.8 52 55.8
HPP92_007366 Vanilla planifolia HOM05D003871 ORTHO05D004621 1.1e-06 57.4 51 52.9
Eucgr.E00211 Eucalyptus grandis HOM05D003871 ORTHO05D004621 1.4e-06 57.0 57 52.6
MSTRG.20801 Avicennia marina HOM05D003871 ORTHO05D004621 1.8e-06 56.6 79 40.5
BcaB04g17067 Brassica carinata HOM05D003871 ORTHO05D004621 1.8e-06 56.6 63 46.0
QL08p050260 Quercus lobata HOM05D003871 ORTHO05D004621 1.8e-06 56.6 54 53.7
BcaB02g11168 Brassica carinata HOM05D003871 ORTHO05D004621 2.4e-06 56.2 63 46.0
DCAR_016001 Daucus carota HOM05D003871 ORTHO05D004621 2.4e-06 56.2 52 53.8
ECA234G1945 Erigeron canadensis HOM05D003871 ORTHO05D005816 2.4e-06 56.2 55 52.7
Medtr7g076160 Medicago truncatula HOM05D003871 ORTHO05D004621 2.4e-06 56.2 80 41.2
Potri.014G075500 Populus trichocarpa HOM05D003871 ORTHO05D004621 2.4e-06 56.2 67 47.8
SEGI_36445 Sequoiadendron giganteum HOM05D003871 ORTHO05D004621 2.4e-06 56.2 52 51.9
Medtr8g432630 Medicago truncatula HOM05D003871 ORTHO05D004621 3.1e-06 55.8 52 50.0
Potri.002G154500 Populus trichocarpa HOM05D003871 ORTHO05D004621 3.1e-06 55.8 55 52.7
Sabra02G0122500 Salix brachista HOM05D003871 ORTHO05D004621 3.1e-06 55.8 55 52.7
Lalb_Chr10g0097451 Lupinus albus HOM05D003871 ORTHO05D004621 6.8e-06 54.7 65 41.5


User provided reference genes

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