Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0757G128 Amborella trichopoda HOM05D006286 ORTHO05D007741 1.6e-129 466.1 233 100.0
Nn1g01303 Nelumbo nucifera HOM05D006286 ORTHO05D007741 4.4e-87 325.1 231 67.1
TAR629G0337 Trochodendron aralioides HOM05D006286 ORTHO05D007741 6.4e-86 321.2 231 65.4
FAN10G3629 Fragaria x ananassa HOM05D006286 ORTHO05D007741 7.1e-85 317.8 230 65.7
Lj5g0022226 Lotus japonicus HOM05D006286 ORTHO05D007741 1.6e-84 316.6 234 64.5
Manes.14G030600 Manihot esculenta HOM05D006286 ORTHO05D007741 1.6e-84 316.6 229 66.4
CiPaw.03G100700 Carya illinoinensis HOM05D006286 ORTHO05D007741 2.7e-84 315.8 230 64.8
Sabra15G0147300 Salix brachista HOM05D006286 ORTHO05D007741 2.7e-84 315.8 220 65.9
Thecc.03G167300 Theobroma cacao HOM05D006286 ORTHO05D007741 2.7e-84 315.8 230 64.8
Duzib084G1364 Durio zibethinus HOM05D006286 ORTHO05D007741 3.5e-84 315.5 230 67.0
FAN01G0056 Fragaria x ananassa HOM05D006286 ORTHO05D007741 6.0e-84 314.7 230 65.2
Sed0023063 Sechium edule HOM05D006286 ORTHO05D007741 6.0e-84 314.7 233 64.4
CsaV3_3G016660 Cucumis sativus L. HOM05D006286 ORTHO05D007741 7.8e-84 314.3 229 64.6
arahy.Tifrunner.gnm1.ann1.MQ4KH5 Arachis hypogaea HOM05D006286 ORTHO05D007741 1.3e-83 313.5 223 65.0
FvH4_7g28750 Fragaria vesca HOM05D006286 ORTHO05D007741 3.0e-83 312.4 230 64.3
Rhsim03G0175100 Rhododendron simsii HOM05D006286 ORTHO05D007741 3.0e-83 312.4 231 65.8
GSVIVG01018444001 Vitis vinifera HOM05D006286 ORTHO05D007741 3.0e-83 312.4 223 65.9
FAN06G1618 Fragaria x ananassa HOM05D006286 ORTHO05D007741 3.9e-83 312.0 230 64.3
Cpa.g.sc4.205 Carica papaya HOM05D006286 ORTHO05D007741 5.1e-83 311.6 238 63.9
MELO3C006861.2 Cucumis melo HOM05D006286 ORTHO05D007741 5.1e-83 311.6 229 63.8
PSO782G2014 Papaver somniferum HOM05D006286 ORTHO05D007741 5.1e-83 311.6 224 67.0
Gohir.A09G179500 Gossypium hirsutum HOM05D006286 ORTHO05D007741 6.6e-83 311.2 230 63.9
FAN06G4550 Fragaria x ananassa HOM05D006286 ORTHO05D007741 8.6e-83 310.8 230 64.3
Oeu047963.2 Olea europaea HOM05D006286 ORTHO05D007741 8.6e-83 310.8 235 65.5
Prupe.2G287700 Prunus persica HOM05D006286 ORTHO05D007741 1.1e-82 310.5 221 66.5
Atru.chr1.554 Acer truncatum HOM05D006286 ORTHO05D007741 1.5e-82 310.1 231 63.6
FAN03G0223 Fragaria x ananassa HOM05D006286 ORTHO05D007741 1.5e-82 310.1 234 64.1
MD01G1193900 Malus domestica HOM05D006286 ORTHO05D007741 1.9e-82 309.7 226 65.9
ClCG05G007720 Citrullus lanatus HOM05D006286 ORTHO05D007741 2.5e-82 309.3 229 63.8
Haze_13788 Corylus avellana HOM05D006286 ORTHO05D007741 2.5e-82 309.3 223 65.9
Eucgr.A02845 Eucalyptus grandis HOM05D006286 ORTHO05D007741 2.5e-82 309.3 223 65.5
RcHm_v2.0_Chr1g0376301 Rosa chinensis HOM05D006286 ORTHO05D007741 3.3e-82 308.9 230 64.3
TWI39G0272 Tripterygium wilfordii HOM05D006286 ORTHO05D007741 3.3e-82 308.9 231 63.6
Ciclev10005723m.g Citrus clementina HOM05D006286 ORTHO05D007741 4.3e-82 308.5 223 64.1
PSO478G4977 Papaver somniferum HOM05D006286 ORTHO05D007741 4.3e-82 308.5 224 66.5
SGA_v2.0_scaffold113G31783 Striga asiatica HOM05D006286 ORTHO05D007741 4.3e-82 308.5 221 67.9
FAN03G0937 Fragaria x ananassa HOM05D006286 ORTHO05D007741 7.3e-82 307.8 234 63.7
Aa31sc908G10 Aethionema arabicum HOM05D006286 ORTHO05D007741 9.5e-82 307.4 234 65.4
Thhalv10014484m.g Eutrema salsugineum HOM05D006286 ORTHO05D007741 9.5e-82 307.4 218 67.0
CANSAT25G1059 Cannabis sativa HOM05D006286 ORTHO05D007741 1.2e-81 307.0 231 64.5
Cfa008258 Carpinus fangiana HOM05D006286 ORTHO05D007741 1.2e-81 307.0 231 64.5
Potri.015G135300 Populus trichocarpa HOM05D006286 ORTHO05D007741 1.2e-81 307.0 230 62.6
QL09p015278 Quercus lobata HOM05D006286 ORTHO05D007741 1.2e-81 307.0 234 63.7
EL10Ac3g05740 Beta vulgaris HOM05D006286 ORTHO05D007741 2.8e-81 305.8 215 67.9
PSO782G5477 Papaver somniferum HOM05D006286 ORTHO05D007741 2.8e-81 305.8 224 66.1
Gorai.006G196900 Gossypium raimondii HOM05D006286 ORTHO05D007741 4.7e-81 305.1 230 62.2
PGSC0003DMG400024248 Solanum tuberosum HOM05D006286 ORTHO05D007741 4.7e-81 305.1 224 63.4
Lalb_Chr06g0160901 Lupinus albus HOM05D006286 ORTHO05D007741 6.2e-81 304.7 220 66.8
Solyc03g006820.3 Solanum lycopersicum HOM05D006286 ORTHO05D007741 6.2e-81 304.7 230 63.0
Sopen03g002810 Solanum pennellii HOM05D006286 ORTHO05D007741 6.2e-81 304.7 230 63.0
CSS0046699 Camellia sinensis var. sinensis HOM05D006286 ORTHO05D007741 8.1e-81 304.3 232 64.2
TPR.G17410 Trifolium pratense HOM05D006286 ORTHO05D007741 8.1e-81 304.3 232 61.2
Actinidia25052 Actinidia chinensis HOM05D006286 ORTHO05D007741 1.4e-80 303.5 231 63.6
Aqoxy7G00487 Aquilegia oxysepala HOM05D006286 ORTHO05D007741 1.4e-80 303.5 233 63.9
Ca_10810_v3 Cicer arietinum L. HOM05D006286 ORTHO05D007741 1.4e-80 303.5 223 63.2
Ah.13g067810 Amaranthus hybridus HOM05D006286 ORTHO05D007741 1.8e-80 303.1 215 67.9
Lsat_1_v5_gn_2_130220 Lactuca sativa HOM05D006286 ORTHO05D007741 1.8e-80 303.1 231 64.5
Phvul.007G065700 Phaseolus vulgaris HOM05D006286 ORTHO05D007741 4.0e-80 302.0 223 65.5
Psat6g201680 Pisum sativum HOM05D006286 ORTHO05D007741 4.0e-80 302.0 234 62.0
Nitab4.5_0004911g0020 Nicotiana tabacum HOM05D006286 ORTHO05D007741 1.5e-79 300.1 230 61.3
Glyma.10G240400 Glycine max HOM05D006286 ORTHO05D007741 2.6e-79 299.3 223 63.2
Peaxi162Scf00192g00519 Petunia axillaris HOM05D006286 ORTHO05D007741 2.6e-79 299.3 232 63.8
Carub.0008s1192 Capsella rubella HOM05D006286 ORTHO05D007741 3.4e-79 298.9 217 67.7
DCAR_018141 Daucus carota HOM05D006286 ORTHO05D007741 4.4e-79 298.5 235 62.1
BcaC04g20627 Brassica carinata HOM05D006286 ORTHO05D007741 5.8e-79 298.1 219 66.2
C09p41380 Brassica napus HOM05D006286 ORTHO05D007741 5.8e-79 298.1 219 66.2
BolC9t57014H Brassica oleracea HOM05D006286 ORTHO05D007741 5.8e-79 298.1 219 66.2
Migut.F00396 Erythranthe guttata HOM05D006286 ORTHO05D007741 5.8e-79 298.1 230 64.8
Os03g0119000 Oryza sativa ssp. japonica HOM05D006286 ORTHO05D007741 5.8e-79 298.1 215 64.7
AUR62021266 Chenopodium quinoa HOM05D006286 ORTHO05D007741 7.6e-79 297.7 219 66.7
HanXRQChr14g0461801 Helianthus annuus HOM05D006286 ORTHO05D007741 9.9e-79 297.4 235 62.6
Sc13g0008250 Simmondsia chinensis HOM05D006286 ORTHO05D007741 1.3e-78 297.0 230 63.5
Gorai.013G064300 Gossypium raimondii HOM05D006286 ORTHO05D007741 2.2e-78 296.2 226 62.8
AT5G51880 Arabidopsis thaliana HOM05D006286 ORTHO05D007741 2.9e-78 295.8 217 67.3
Gohir.D13G056900 Gossypium hirsutum HOM05D006286 ORTHO05D007741 3.8e-78 295.4 226 62.8
A10p09720 Brassica napus HOM05D006286 ORTHO05D007741 6.4e-78 294.7 221 64.3
BraA10t43052Z Brassica rapa HOM05D006286 ORTHO05D007741 6.4e-78 294.7 221 64.3
CAN.G1097.8 Capsicum annuum HOM05D006286 ORTHO05D007741 8.4e-78 294.3 224 62.5
Sp6g14140 Schrenkiella parvula HOM05D006286 ORTHO05D007741 1.1e-77 293.9 233 63.5
Cc02_g03560 Coffea canephora HOM05D006286 ORTHO05D007741 1.9e-77 293.1 231 60.2
Gohir.A13G064700 Gossypium hirsutum HOM05D006286 ORTHO05D007741 2.4e-77 292.7 226 62.4
THA.LOC104825086 Tarenaya hassleriana HOM05D006286 ORTHO05D007741 5.4e-77 291.6 230 61.7
MSTRG.8433 Avicennia marina HOM05D006286 ORTHO05D007741 2.7e-76 289.3 207 67.6
AL8G26180 Arabidopsis lyrata HOM05D006286 ORTHO05D007741 3.5e-76 288.9 217 64.1
BcaB08g35541 Brassica carinata HOM05D006286 ORTHO05D007741 4.6e-76 288.5 221 63.8
Rhsim09G0195200 Rhododendron simsii HOM05D006286 ORTHO05D007741 7.8e-76 287.7 230 60.4
unitig_37.g11947 Utricularia gibba HOM05D006286 ORTHO05D007741 1.0e-75 287.3 222 64.0
ECA238G1566 Erigeron canadensis HOM05D006286 ORTHO05D007741 3.9e-75 285.4 234 60.7
Hund04686 Selenicereus undatus HOM05D006286 ORTHO05D007741 3.9e-75 285.4 212 64.2
VMungo0720G2540 Vigna mungo HOM05D006286 ORTHO05D007741 1.1e-74 283.9 211 64.9
CDE12G0688 Ceratophyllum demersum HOM05D006286 ORTHO05D007741 2.5e-74 282.7 220 63.2
Dinv28504 Davidia involucrata HOM05D006286 ORTHO05D007741 4.3e-74 282.0 193 68.4
PGR042G3452 Punica granatum HOM05D006286 ORTHO05D007741 5.6e-74 281.6 200 67.5
HPP92_003528 Vanilla planifolia HOM05D006286 ORTHO05D007741 2.1e-73 279.6 232 60.8
vmacro09869 Vaccinium macrocarpon HOM05D006286 ORTHO05D007741 1.1e-72 277.3 231 58.9
Actinidia14215 Actinidia chinensis HOM05D006286 ORTHO05D007741 1.4e-72 276.9 240 58.8
Lj8A31T63 Lonicera japonica HOM05D006286 ORTHO05D007741 1.4e-72 276.9 197 66.5
arahy.Tifrunner.gnm1.ann1.TWGE9F Arachis hypogaea HOM05D006286 ORTHO05D007741 8.9e-72 274.2 198 64.1
AUR62016058 Chenopodium quinoa HOM05D006286 ORTHO05D007741 4.4e-71 271.9 193 67.4
Nitab4.5_0000832g0010 Nicotiana tabacum HOM05D006286 ORTHO05D007741 2.2e-70 269.6 193 65.3
MBI12_g36686_MAGBIO Magnolia biondii HOM05D006286 ORTHO05D007741 4.2e-69 265.4 189 67.7
CARHR264790 Cardamine hirsuta HOM05D006286 ORTHO05D007741 9.3e-69 264.2 197 65.0
vmacro06741 Vaccinium macrocarpon HOM05D006286 ORTHO05D007741 1.3e-67 260.4 224 57.1
Mapoly0028s0137 Marchantia polymorpha HOM05D006286 ORTHO05D007741 1.9e-66 256.5 235 55.7
SMO139G0115 Selaginella moellendorffii HOM05D006286 ORTHO05D007741 4.8e-65 251.9 220 55.5
SalBow2G2245 Salvia bowleyana HOM05D006286 ORTHO05D007741 9.0e-64 247.7 221 57.9
COL.COLO4_14231 Corchorus olitorius HOM05D006286 ORTHO05D007741 7.6e-63 244.6 185 61.6
CiPaw.15G075500 Carya illinoinensis HOM05D006286 ORTHO05D007741 3.5e-60 235.7 201 57.7
AagrBONN_evm.TU.Sc2ySwM_368.2699 Anthoceros agrestis HOM05D006286 ORTHO05D007741 5.6e-58 228.4 217 53.5
Glyma.20G154300 Glycine max HOM05D006286 ORTHO05D007741 4.0e-56 222.2 183 59.0
Pp3c22_4190 Physcomitrium patens HOM05D006286 ORTHO05D007741 9.0e-56 221.1 234 49.6
SEGI_34239 Sequoiadendron giganteum HOM05D006286 ORTHO05D007741 1.5e-55 220.3 183 60.7
Zm00001eb001360 Zea mays HOM05D006286 ORTHO05D007741 6.4e-54 214.9 192 56.8
Potri.012G133100 Populus trichocarpa HOM05D006286 ORTHO05D007741 1.6e-52 210.3 258 46.5
Gohir.D09G174800 Gossypium hirsutum HOM05D006286 ORTHO05D007741 2.8e-49 199.5 142 64.1
Medtr1g101840 Medicago truncatula HOM05D006286 ORTHO05D007741 1.2e-47 194.1 139 66.2
Actinidia03097 Actinidia chinensis HOM05D006286 ORTHO05D007741 1.3e-43 180.6 130 64.6
SHI13825 Sapria himalayana HOM05D000350 ORTHO05D000228 3.9e-27 125.9 184 38.0
MCO04G355 Micromonas commoda HOM05D006286 ORTHO05D007741 2.2e-25 120.2 208 36.1
Actinidia13543 Actinidia chinensis HOM05D006286 ORTHO05D007741 1.1e-21 107.8 88 59.1
Cre14.g619900 Chlamydomonas reinhardtii HOM05D006286 ORTHO05D007741 1.1e-21 107.8 217 33.2
PRCOL_00006636 Prasinoderma coloniale HOM05D006286 ORTHO05D007741 5.5e-21 105.5 243 33.3
Cfa025685 Carpinus fangiana HOM05D006286 ORTHO05D007741 9.4e-21 104.8 256 30.5
RcHm_v2.0_Chr1g0376261 Rosa chinensis HOM05D006286 ORTHO05D007741 2.2e-14 83.6 50 72.0
FvH4_2g14060 Fragaria vesca HOM05D006286 ORTHO05D007741 3.6e-12 76.3 61 57.4
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 1.8e-11 73.9 48 72.9
SEGI_15131 Sequoiadendron giganteum HOM05D006286 ORTHO05D007741 1.2e-07 61.2 33 78.8
MCO01G267 Micromonas commoda HOM05D049972 ORTHO05D049270 5.9e-07 58.9 212 25.5


User provided reference genes

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