Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 0.0e+00 1124.4 563 100.0
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 7.1e-208 727.6 497 73.0
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 3.5e-207 725.3 504 73.0
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 6.7e-206 721.1 497 73.2
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 9.1e-195 684.1 505 69.1
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 2.6e-194 682.6 506 69.0
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 8.5e-193 677.6 497 69.0
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 6.1e-191 671.4 501 67.5
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 5.7e-189 664.8 500 67.0
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 1.7e-188 663.3 500 67.8
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 8.2e-188 661.0 499 66.9
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 1.1e-187 660.6 505 65.7
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 3.1e-187 659.1 501 65.9
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 4.1e-187 658.7 506 65.6
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 7.0e-187 657.9 501 66.9
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 9.1e-187 657.5 498 66.7
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 4.5e-186 655.2 498 65.7
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 7.7e-186 654.4 507 66.5
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 1.0e-185 654.1 509 65.2
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 3.8e-185 652.1 501 65.1
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 5.0e-185 651.7 497 66.6
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 1.9e-184 649.8 497 65.4
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 2.5e-184 649.4 513 64.3
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 3.2e-184 649.0 497 66.2
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 4.2e-184 648.7 495 66.5
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 5.5e-184 648.3 498 64.5
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 9.4e-184 647.5 506 64.6
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 9.4e-184 647.5 497 64.8
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 1.2e-183 647.1 496 66.3
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 2.1e-183 646.4 499 65.9
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 2.7e-183 646.0 501 65.7
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 1.5e-181 640.2 511 64.0
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 2.6e-181 639.4 498 64.5
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 3.3e-181 639.0 510 64.1
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 5.7e-181 638.3 502 64.9
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 5.7e-181 638.3 498 64.3
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 1.7e-180 636.7 498 64.3
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 2.8e-180 636.0 512 63.5
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 3.7e-180 635.6 517 63.4
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 4.8e-180 635.2 498 63.9
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 4.8e-180 635.2 523 62.7
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 8.2e-180 634.4 504 64.3
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 3.1e-179 632.5 557 60.0
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 4.1e-179 632.1 508 63.4
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 1.6e-178 630.2 499 63.3
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 2.0e-178 629.8 502 64.1
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 2.0e-178 629.8 499 63.9
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 5.9e-178 628.2 502 63.1
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 5.9e-178 628.2 513 62.0
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 1.0e-177 627.5 511 62.6
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 2.2e-177 626.3 502 62.7
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 2.2e-177 626.3 498 64.7
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 2.2e-177 626.3 476 66.8
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 3.8e-177 625.5 499 63.1
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 4.2e-176 622.1 513 63.4
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 9.4e-176 620.9 494 62.8
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 9.4e-176 620.9 507 62.5
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 6.1e-175 618.2 502 61.8
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 1.8e-174 616.7 508 63.6
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 1.4e-171 607.1 507 60.9
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 9.1e-171 604.4 498 63.1
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 2.7e-170 602.8 499 62.9
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 2.9e-169 599.4 583 56.3
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 1.1e-168 597.4 501 61.7
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 4.2e-168 595.5 527 59.2
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 6.1e-167 591.7 533 57.2
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 3.0e-166 589.3 399 72.9
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 3.0e-166 589.3 529 57.7
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 2.6e-165 586.3 499 60.9
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 6.3e-164 581.6 501 60.5
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 1.6e-159 567.0 516 55.8
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 1.0e-158 564.3 496 60.3
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 1.3e-156 557.4 502 56.4
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 3.7e-156 555.8 505 56.2
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 2.9e-153 546.2 548 55.5
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 1.1e-152 544.3 529 54.1
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 2.8e-151 539.7 496 58.9
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 4.7e-151 538.9 509 54.4
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 6.1e-151 538.5 457 61.5
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 1.8e-150 537.0 567 50.8
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 4.0e-150 535.8 457 61.3
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 3.4e-149 532.7 508 53.9
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 3.4e-149 532.7 508 53.9
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 3.4e-149 532.7 508 53.9
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 7.5e-149 531.6 515 53.6
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 7.5e-149 531.6 508 53.9
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 2.9e-148 529.6 506 54.0
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 5.4e-147 525.4 404 65.3
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 8.0e-143 511.5 364 70.1
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 5.6e-136 488.8 355 69.0
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 8.4e-116 421.8 471 54.6
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 1.4e-115 421.0 382 58.9
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 2.0e-109 400.6 533 44.8
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 3.4e-109 399.8 502 48.8
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 5.4e-107 392.5 508 44.5
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 5.4e-107 392.5 497 44.5
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 2.8e-103 380.2 275 68.0
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 5.3e-94 349.4 492 44.9
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 3.5e-90 336.7 255 66.7
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 1.0e-89 335.1 255 66.7
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.6e-87 327.8 558 35.5
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 1.1e-83 315.1 255 63.5
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 5.0e-68 263.1 259 49.0
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 5.5e-67 259.6 194 65.5
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 1.8e-65 254.6 183 67.2
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 1.8e-65 254.6 225 58.7
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 2.6e-64 250.8 222 62.2
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 2.2e-63 247.7 449 38.5
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 3.2e-59 233.8 246 48.8
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 1.6e-58 231.5 245 51.0
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 8.0e-58 229.2 469 30.7
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 4.0e-57 226.9 213 57.7
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 3.5e-45 187.2 169 58.6
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 8.6e-44 182.6 306 38.9
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 8.9e-41 172.6 248 41.9
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 7.8e-37 159.5 174 47.1
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 3.0e-36 157.5 138 61.6
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 1.2e-32 145.6 259 37.1
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 5.2e-25 120.2 476 25.4
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 6.8e-25 119.8 97 64.9
Cpa.g.sc15.22 Carica papaya HOM05D005847 ORTHO05D007143 7.5e-24 116.3 83 69.9
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 1.1e-19 102.4 121 47.9
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 2.1e-18 98.2 103 51.5
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 1.1e-17 95.9 181 33.1
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 5.2e-17 93.6 96 51.0
QL02p028460 Quercus lobata HOM05D005847 ORTHO05D007143 5.1e-12 77.0 127 37.0
Lj3g0011757 Lotus japonicus HOM05D005847 ORTHO05D007143 8.1e-10 69.7 183 32.2
Medtr8g040720 Medicago truncatula HOM05D005847 ORTHO05D007143 9.9e-08 62.8 44 61.4
QL02p028464 Quercus lobata HOM05D005847 ORTHO05D007143 2.9e-07 61.2 88 39.8
Nitab4.5_0000109g0320 Nicotiana tabacum HOM05D005847 ORTHO05D007143 8.4e-07 59.7 42 64.3


User provided reference genes

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