Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0753G168 Amborella trichopoda HOM05D005365 ORTHO05D006910 0.0e+00 2075.4 1073 100.0
TAR374G0610 Trochodendron aralioides HOM05D005365 ORTHO05D006910 0.0e+00 1180.2 1007 61.9
Nn4g24353 Nelumbo nucifera HOM05D005365 ORTHO05D006910 0.0e+00 1161.7 1023 60.4
Dinv19044 Davidia involucrata HOM05D005365 ORTHO05D006910 0.0e+00 1126.7 1026 59.4
Actinidia06487 Actinidia chinensis HOM05D005365 ORTHO05D006910 0.0e+00 1124.0 1034 57.8
CSS0031268 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 0.0e+00 1120.1 1024 58.6
PSO478G2448 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1103.2 1035 59.0
Lj2C520T1 Lonicera japonica HOM05D005365 ORTHO05D006910 0.0e+00 1101.3 1034 56.5
Cfa007794 Carpinus fangiana HOM05D005365 ORTHO05D006910 0.0e+00 1100.9 1009 57.6
PSO017G3744 Papaver somniferum HOM05D005365 ORTHO05D006910 0.0e+00 1099.3 1027 58.7
Aqoxy2G03929 Aquilegia oxysepala HOM05D005365 ORTHO05D006910 0.0e+00 1096.6 1031 57.3
GSVIVG01014028001 Vitis vinifera HOM05D005365 ORTHO05D006910 0.0e+00 1096.3 1027 58.2
MD09G1270700 Malus domestica HOM05D005365 ORTHO05D006910 0.0e+00 1086.2 1029 56.1
Prupe.3G017700 Prunus persica HOM05D005365 ORTHO05D006910 0.0e+00 1079.7 1033 55.5
Atru.chr1.1986 Acer truncatum HOM05D005365 ORTHO05D006910 2.9e-311 1072.0 1029 55.7
Haze_14277 Corylus avellana HOM05D005365 ORTHO05D006910 2.9e-311 1072.0 1008 57.0
MD17G1268900 Malus domestica HOM05D005365 ORTHO05D006910 8.8e-311 1070.5 1037 55.6
CiPaw.03G073200 Carya illinoinensis HOM05D005365 ORTHO05D006910 2.8e-309 1065.4 1023 56.9
Hma1.2p1_1583F.1_g291990 Hydrangea macrophylla HOM05D005365 ORTHO05D006910 4.4e-307 1058.1 952 60.2
QL02p059099 Quercus lobata HOM05D005365 ORTHO05D006910 4.9e-306 1054.7 1142 52.3
Potri.004G085500 Populus trichocarpa HOM05D005365 ORTHO05D006910 3.2e-305 1052.0 1041 55.7
Duzib133G0311 Durio zibethinus HOM05D005365 ORTHO05D006910 4.1e-305 1051.6 1026 55.8
Thecc.04G055200 Theobroma cacao HOM05D005365 ORTHO05D006910 5.4e-305 1051.2 971 58.1
Cpa.g.sc116.71 Carica papaya HOM05D005365 ORTHO05D006910 1.2e-304 1050.0 1025 54.9
Gorai.007G187500 Gossypium raimondii HOM05D005365 ORTHO05D006910 3.5e-304 1048.5 1030 55.0
vmacro07709 Vaccinium macrocarpon HOM05D005365 ORTHO05D006910 3.5e-304 1048.5 1016 55.9
FAN26G1336 Fragaria x ananassa HOM05D005365 ORTHO05D006910 4.3e-302 1041.6 1031 54.9
CSS0046739 Camellia sinensis var. sinensis HOM05D005365 ORTHO05D006910 9.5e-302 1040.4 1024 55.5
Ciclev10010965m.g Citrus clementina HOM05D005365 ORTHO05D006910 3.6e-301 1038.5 1035 54.4
TWI77G0914 Tripterygium wilfordii HOM05D005365 ORTHO05D006910 1.4e-297 1026.5 983 55.5
Nitab4.5_0012785g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 5.4e-297 1024.6 1033 53.0
Sopen11g006160 Solanum pennellii HOM05D005365 ORTHO05D006910 3.5e-296 1021.9 1000 53.7
AUR62018225 Chenopodium quinoa HOM05D005365 ORTHO05D006910 1.3e-295 1020.0 1030 53.8
RcHm_v2.0_Chr3g0491161 Rosa chinensis HOM05D005365 ORTHO05D006910 1.7e-295 1019.6 1036 54.4
Solyc11g011370.2 Solanum lycopersicum HOM05D005365 ORTHO05D006910 1.7e-295 1019.6 1002 53.3
Eucgr.F02871 Eucalyptus grandis HOM05D005365 ORTHO05D006910 2.3e-295 1019.2 1033 54.4
Manes.03G027200 Manihot esculenta HOM05D005365 ORTHO05D006910 3.3e-294 1015.4 1026 54.2
Zm00001eb379890 Zea mays HOM05D005365 ORTHO05D006910 3.6e-293 1011.9 1043 54.2
arahy.Tifrunner.gnm1.ann1.WJY350 Arachis hypogaea HOM05D005365 ORTHO05D006910 6.2e-293 1011.1 1012 54.4
Glyma.11G215600 Glycine max HOM05D005365 ORTHO05D006910 6.2e-293 1011.1 1041 52.6
AUR62037789 Chenopodium quinoa HOM05D005365 ORTHO05D006910 6.8e-292 1007.7 1026 53.6
FAN19G1822 Fragaria x ananassa HOM05D005365 ORTHO05D006910 6.8e-292 1007.7 1006 54.9
VMungo1383G2900 Vigna mungo HOM05D005365 ORTHO05D006910 2.0e-291 1006.1 1041 52.9
Glyma.18G041000 Glycine max HOM05D005365 ORTHO05D006910 2.2e-290 1002.7 1043 52.4
arahy.Tifrunner.gnm1.ann1.MH7SY7 Arachis hypogaea HOM05D005365 ORTHO05D006910 2.9e-290 1002.3 1011 53.9
CAN.G222.54 Capsicum annuum HOM05D005365 ORTHO05D006910 4.9e-290 1001.5 1005 52.7
ECA238G2923 Erigeron canadensis HOM05D005365 ORTHO05D006910 4.9e-290 1001.5 1024 53.3
Phvul.001G229600 Phaseolus vulgaris HOM05D005365 ORTHO05D006910 8.3e-290 1000.7 1036 52.8
Cc07_g13300 Coffea canephora HOM05D005365 ORTHO05D006910 3.2e-289 998.8 1031 53.1
Lj6g0003323 Lotus japonicus HOM05D005365 ORTHO05D006910 7.1e-289 997.7 978 54.1
Ca_17092_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 6.0e-288 994.6 1014 53.3
Gohir.D11G174900 Gossypium hirsutum HOM05D005365 ORTHO05D006910 1.3e-287 993.4 923 56.4
ClCG03G008820 Citrullus lanatus HOM05D005365 ORTHO05D006910 1.7e-287 993.0 1022 52.5
MSTRG.15661 Avicennia marina HOM05D005365 ORTHO05D006910 2.3e-287 992.6 1027 53.5
PGR004G1341 Punica granatum HOM05D005365 ORTHO05D006910 2.3e-287 992.6 1033 53.5
CANSAT80G2352 Cannabis sativa HOM05D005365 ORTHO05D006910 3.0e-287 992.3 1043 51.4
CsaV3_5G023940 Cucumis sativus L. HOM05D005365 ORTHO05D006910 3.9e-287 991.9 1022 53.1
MELO3C022831.2 Cucumis melo HOM05D005365 ORTHO05D006910 6.6e-287 991.1 1024 52.7
Lsat_1_v5_gn_2_68700 Lactuca sativa HOM05D005365 ORTHO05D006910 4.3e-286 988.4 1027 51.6
EL10Ac2g03189 Beta vulgaris HOM05D005365 ORTHO05D006910 7.3e-286 987.6 1039 52.8
Lalb_Chr15g0084951 Lupinus albus HOM05D005365 ORTHO05D006910 7.3e-286 987.6 1033 52.8
Medtr3g065300 Medicago truncatula HOM05D005365 ORTHO05D006910 2.1e-285 986.1 1007 53.2
CARHR215230 Cardamine hirsuta HOM05D005365 ORTHO05D006910 2.8e-285 985.7 1046 51.2
Peaxi162Scf00562g00038 Petunia axillaris HOM05D005365 ORTHO05D006910 4.7e-285 984.9 1027 52.0
MBI19_g22067_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 2.6e-283 979.2 1170 49.1
Migut.K00918 Erythranthe guttata HOM05D005365 ORTHO05D006910 9.9e-283 977.2 1002 52.5
Sabra04G0056600 Salix brachista HOM05D005365 ORTHO05D006910 2.9e-282 975.7 1044 52.5
Aa31LG9G17470 Aethionema arabicum HOM05D005365 ORTHO05D006910 6.4e-282 974.5 1055 51.4
Psat5g120520 Pisum sativum HOM05D005365 ORTHO05D006910 8.4e-282 974.2 1015 52.3
THA.LOC104805627 Tarenaya hassleriana HOM05D005365 ORTHO05D006910 9.2e-281 970.7 1048 52.1
Sp7g04480 Schrenkiella parvula HOM05D005365 ORTHO05D006910 3.3e-278 962.2 1041 51.0
Thhalv10027629m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 1.6e-277 959.9 1047 50.9
AL7G46400 Arabidopsis lyrata HOM05D005365 ORTHO05D006910 1.1e-276 957.2 1045 50.0
Carub.0007s3279 Capsella rubella HOM05D005365 ORTHO05D006910 1.1e-276 957.2 1058 49.9
AT5G37630 Arabidopsis thaliana HOM05D005365 ORTHO05D006910 1.4e-276 956.8 1043 50.2
DCAR_028454 Daucus carota HOM05D005365 ORTHO05D006910 3.1e-276 955.7 1032 51.3
A04p10780 Brassica napus HOM05D005365 ORTHO05D006910 2.6e-275 952.6 1043 50.4
BraA04t16742Z Brassica rapa HOM05D005365 ORTHO05D006910 2.6e-275 952.6 1043 50.4
CDE05G1264 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 5.8e-275 951.4 841 59.0
SGA_v2.0_scaffold45G17160 Striga asiatica HOM05D005365 ORTHO05D006910 5.4e-273 944.9 1059 49.8
BcaB06g27110 Brassica carinata HOM05D005365 ORTHO05D006910 2.7e-272 942.6 1042 50.5
Hund13093 Selenicereus undatus HOM05D005365 ORTHO05D006910 1.0e-271 940.6 1022 51.2
BcaC02g09592 Brassica carinata HOM05D005365 ORTHO05D006910 7.3e-270 934.5 1049 49.6
BolC4t26020H Brassica oleracea HOM05D005365 ORTHO05D006910 1.6e-269 933.3 1049 49.6
C04p44500 Brassica napus HOM05D005365 ORTHO05D006910 3.4e-267 925.6 1074 48.6
Ca_17099_v3 Cicer arietinum L. HOM05D005365 ORTHO05D006910 4.9e-266 921.8 1014 51.0
FAN23G0266 Fragaria x ananassa HOM05D005365 ORTHO05D006910 2.1e-240 836.6 749 57.9
Ah.10g032430 Amaranthus hybridus HOM05D005365 ORTHO05D006910 2.7e-240 836.3 764 56.4
FvH4_1g30230 Fragaria vesca HOM05D005365 ORTHO05D006910 7.9e-240 834.7 754 57.7
Sc11g0004580 Simmondsia chinensis HOM05D005365 ORTHO05D006910 1.3e-239 833.9 745 57.6
Nitab4.5_0000201g0010 Nicotiana tabacum HOM05D005365 ORTHO05D006910 3.1e-236 822.8 917 49.3
Gohir.A11G168700 Gossypium hirsutum HOM05D005365 ORTHO05D006910 2.0e-235 820.1 729 58.2
Rhsim10G0178300 Rhododendron simsii HOM05D005365 ORTHO05D006910 2.5e-233 813.1 1048 46.2
Sed0006074 Sechium edule HOM05D005365 ORTHO05D006910 5.5e-233 812.0 747 56.8
Pp3c22_14670 Physcomitrium patens HOM05D005365 ORTHO05D006910 4.0e-215 752.7 1035 43.0
COL.COLO4_13431 Corchorus olitorius HOM05D005365 ORTHO05D006910 3.1e-212 743.0 1023 45.0
SEGI_16018 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 1.6e-211 740.7 718 56.0
Actinidia17204 Actinidia chinensis HOM05D005365 ORTHO05D006910 2.9e-210 736.5 639 59.8
Dinv28185 Davidia involucrata HOM05D005365 ORTHO05D006910 4.4e-198 696.0 540 66.3
Mapoly0032s0119 Marchantia polymorpha HOM05D005365 ORTHO05D006910 1.2e-190 671.4 892 44.2
unitig_0.g2645 Utricularia gibba HOM05D005365 ORTHO05D006910 5.4e-188 662.5 977 42.1
PGSC0003DMG400013306 Solanum tuberosum HOM05D005365 ORTHO05D006910 3.3e-185 653.3 644 53.3
HPP92_006138 Vanilla planifolia HOM05D005365 ORTHO05D006910 5.8e-182 642.5 603 56.2
SMO367G0263 Selaginella moellendorffii HOM05D005365 ORTHO05D006910 2.3e-178 630.6 922 39.2
TPR.G24911 Trifolium pratense HOM05D005365 ORTHO05D006910 3.3e-177 626.7 571 56.2
AagrBONN_evm.TU.Sc2ySwM_228.4009 Anthoceros agrestis HOM05D005365 ORTHO05D006910 1.2e-171 608.2 986 40.3
GSVIVG01038363001 Vitis vinifera HOM05D005365 ORTHO05D006910 2.8e-136 490.7 430 59.3
Thhalv10027679m.g Eutrema salsugineum HOM05D005365 ORTHO05D006910 1.1e-132 478.8 660 45.0
SEGI_18021 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 7.2e-108 396.4 324 61.1
Os06g0256000 Oryza sativa ssp. japonica HOM05D005365 ORTHO05D006910 1.0e-82 312.8 381 48.6
GSVIVG01038362001 Vitis vinifera HOM05D005365 ORTHO05D006910 9.8e-81 306.2 250 64.0
CBR_g39392 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-80 304.7 416 41.3
MCO13G329 Micromonas commoda HOM05D005365 ORTHO05D006910 5.6e-76 290.4 951 27.3
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 2.2e-72 278.5 233 60.1
PRCOL_00005851 Prasinoderma coloniale HOM05D005365 ORTHO05D006910 2.2e-72 278.5 925 28.5
Oeu012492.1 Olea europaea HOM05D005365 ORTHO05D006910 3.6e-67 261.2 787 30.5
CDE05G3412 Ceratophyllum demersum HOM05D005365 ORTHO05D006910 2.9e-64 251.5 198 63.6
Oeu012494.1 Olea europaea HOM05D005365 ORTHO05D006910 8.3e-64 250.0 232 54.3
SGA_v2.0_scaffold45G17195 Striga asiatica HOM05D005365 ORTHO05D006910 2.3e-61 241.9 372 40.6
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 2.5e-60 238.4 196 59.7
MBI19_g43231_MAGBIO Magnolia biondii HOM05D005365 ORTHO05D006910 9.9e-57 226.5 234 53.4
CAN.G691.4 Capsicum annuum HOM05D005365 ORTHO05D006910 4.7e-51 207.6 244 47.1
TPR.G674 Trifolium pratense HOM05D005365 ORTHO05D006910 2.1e-38 165.6 251 44.2
HPP92_006139 Vanilla planifolia HOM05D005365 ORTHO05D006910 5.6e-36 157.5 280 42.1
GSVIVG01030692001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.5e-33 149.4 127 60.6
SGA_v2.0_scaffold45G17196 Striga asiatica HOM05D005365 ORTHO05D006910 1.8e-26 125.9 105 61.0
Nn1g00453 Nelumbo nucifera HOM05D005365 ORTHO05D006910 3.0e-21 108.6 64 78.1
Psat1g154520 Pisum sativum HOM05D005365 ORTHO05D006910 1.1e-20 106.7 86 66.3
SEGI_04861 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 1.2e-14 86.7 73 60.3
Gorai.005G096400 Gossypium raimondii HOM05D005365 ORTHO05D015145 7.9e-14 84.0 65 60.0
Gohir.D04G112220 Gossypium hirsutum HOM05D005365 ORTHO05D006910 5.1e-13 81.3 68 57.4
GSVIVG01030691001 Vitis vinifera HOM05D005365 ORTHO05D006910 1.9e-12 79.3 70 57.1
Cfa023924 Carpinus fangiana HOM05D005365 ORTHO05D006910 5.7e-12 77.8 189 28.0
Psat7g195800 Pisum sativum HOM05D005365 ORTHO05D006910 1.7e-08 66.2 53 69.8
TPR.G7041 Trifolium pratense HOM05D005365 ORTHO05D006910 3.8e-08 65.1 52 59.6
SEGI_36380 Sequoiadendron giganteum HOM05D005365 ORTHO05D006910 5.5e-07 61.2 56 51.8
SEGI_22187 Sequoiadendron giganteum HOM05D005365 ORTHO05D000227 1.6e-06 59.7 44 59.1


User provided reference genes

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