Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 3093.9 1591 100.0
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2219.9 1592 72.8
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2177.9 1594 70.3
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2171.7 1601 69.6
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2169.8 1594 69.9
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2131.3 1613 68.3
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2131.3 1592 69.0
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2108.2 1605 67.9
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2103.2 1589 68.5
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2102.4 1588 68.7
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2101.6 1606 67.6
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2096.6 1591 67.6
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2092.4 1607 67.3
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2080.1 1619 67.0
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2078.1 1589 67.1
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2069.7 1588 66.6
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2066.6 1607 66.8
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2064.7 1603 66.3
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2063.1 1607 66.6
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2060.4 1601 66.1
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 2051.9 1595 66.5
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2047.3 1591 66.2
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2047.3 1624 65.6
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2046.9 1600 65.6
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2045.0 1612 66.1
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2022.3 1608 65.3
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2021.1 1595 65.6
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2016.1 1614 64.7
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2011.1 1598 65.1
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2010.3 1595 65.5
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2007.3 1603 65.1
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 2006.1 1614 64.9
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2003.0 1611 64.8
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 1991.9 1614 64.6
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 1991.5 1587 64.7
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 1985.3 1611 63.8
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 1983.4 1593 64.2
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 1975.3 1616 64.0
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 1974.1 1609 63.8
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 1974.1 1509 67.8
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 1973.0 1592 64.4
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 1972.2 1581 64.6
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 1966.4 1621 63.8
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 1965.3 1587 64.8
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 1965.3 1498 67.8
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 1962.2 1631 62.7
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 1952.6 1603 64.1
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1945.2 1609 63.0
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 1942.5 1660 62.0
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 1942.2 1592 62.8
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 1940.2 1592 63.9
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1938.7 1588 63.1
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 1935.6 1625 62.0
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 1935.2 1614 62.1
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 1933.3 1595 63.7
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 1928.3 1916 56.2
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1922.1 1616 62.6
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 1916.0 1618 61.6
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 1914.4 1616 61.6
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 1911.0 1595 63.1
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 1908.3 1603 61.6
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 1906.0 1589 62.8
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 1905.2 1626 61.7
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 1902.1 1619 61.0
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 1897.9 1620 61.5
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1892.9 1603 61.8
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 1892.9 1501 65.3
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1886.3 1605 61.4
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 1885.9 1587 62.5
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1885.2 1609 61.0
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 1884.4 1609 61.2
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 1884.0 1609 61.2
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1884.0 1444 67.2
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 1877.1 1639 61.8
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 1872.8 1614 61.2
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 1870.9 1589 61.7
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 1856.6 1608 60.3
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 1853.6 1592 60.8
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 1853.2 1603 60.9
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 1850.9 1605 60.6
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 1848.2 1613 59.9
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 1839.7 1592 60.5
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 1836.6 1420 65.9
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 1792.3 1552 61.3
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 1768.4 1472 63.0
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 1765.4 1945 51.0
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 1763.8 1419 65.6
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 1711.8 1365 65.6
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 1708.3 1623 57.1
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1679.8 1587 56.6
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1652.5 1201 70.2
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1622.4 1563 55.0
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1621.3 1595 55.0
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1553.5 1638 51.8
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1492.6 1606 50.4
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1483.4 1197 64.2
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1483.0 1543 54.6
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1456.8 1210 63.8
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1454.9 1103 68.8
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1391.3 1414 55.2
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1369.4 1579 48.1
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1326.6 1371 54.4
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1315.8 977 69.0
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1295.4 967 68.9
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1122.1 1084 56.5
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 1.6e-305 1053.5 735 73.3
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 8.9e-280 968.0 1578 40.1
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 6.9e-216 755.7 661 62.2
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 1.2e-215 755.0 600 65.8
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 3.6e-212 743.4 646 59.8
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 8.2e-201 705.7 531 69.1
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 4.7e-196 689.9 612 57.8
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 7.2e-189 666.0 499 68.9
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 4.0e-187 660.2 581 59.0
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.0e-186 657.9 598 58.4
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 4.4e-186 656.8 592 58.4
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 3.5e-183 647.1 521 66.0
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 1.6e-151 542.0 644 48.3
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 6.6e-150 536.6 462 60.4
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 2.1e-148 531.6 488 58.2
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 2.1e-143 515.0 555 53.7
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 2.5e-141 508.1 507 55.0
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 4.3e-141 507.3 333 76.3
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 4.0e-139 500.7 510 53.5
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 4.3e-133 480.7 470 54.5
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 7.6e-130 469.9 360 69.4
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 9.3e-128 463.0 407 60.9
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 9.6e-125 453.0 323 74.6
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 2.4e-123 448.4 398 61.6
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 2.0e-122 445.3 368 65.5
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 5.3e-107 394.0 292 71.6
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 5.3e-99 367.5 324 60.5
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 2.0e-93 349.0 319 58.0
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 4.3e-93 347.8 315 59.7
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 2.2e-81 308.9 390 45.4
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 4.5e-74 284.6 247 57.9
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 8.3e-68 263.8 251 53.0
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 1.8e-67 262.7 211 64.9
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 1.2e-58 233.4 157 74.5
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 6.6e-57 227.6 143 77.6
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 1.1e-56 226.9 161 69.6
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 8.0e-55 220.7 211 60.7
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 3.7e-52 211.8 141 75.9
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 5.2e-38 164.9 147 58.5
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.2e-31 143.7 142 54.9
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 1.5e-29 136.7 123 56.9
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 1.7e-28 133.3 99 63.6
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 1.7e-28 133.3 125 59.2
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 4.1e-27 128.6 91 68.1
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 2.1e-26 126.3 101 61.4
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 3.9e-25 122.1 108 55.6
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 2.6e-21 109.4 110 60.9
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 3.4e-21 109.0 82 62.2
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.4e-19 103.6 144 43.8
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.4e-19 103.6 144 43.8
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.4e-19 103.6 144 43.8
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.4e-19 103.6 144 43.8
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.4e-19 103.6 144 43.8
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.9e-19 103.2 144 43.8
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 7.1e-19 101.3 91 56.0
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.2e-18 100.5 144 43.1
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 1.2e-18 100.5 144 43.1
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 1.3e-17 97.1 56 69.6
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 1.3e-17 97.1 56 69.6
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.3e-17 97.1 80 65.0
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 2.4e-14 86.3 56 75.0
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 5.3e-14 85.1 58 65.5
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 1.5e-13 83.6 128 43.0
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.6e-13 82.8 128 43.0
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 2.7e-10 72.8 49 65.3
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 4.3e-08 65.5 48 60.4
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 1.6e-07 63.5 53 56.6
Psat7g192520 Pisum sativum HOM05D002736 ORTHO05D018191 5.3e-06 58.5 153 31.4
Psat6g165840 Pisum sativum HOM05D004417 ORTHO05D322506 9.0e-06 57.8 70 45.7


User provided reference genes

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