Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 2.8e-84 315.1 144 100.0
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 4.1e-59 231.5 137 73.0
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 4.5e-58 228.0 132 72.0
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 1.3e-57 226.5 137 70.1
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 1.7e-57 226.1 138 68.1
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 2.9e-57 225.3 139 71.9
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 6.6e-57 224.2 133 67.7
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 8.6e-57 223.8 138 70.3
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 8.6e-57 223.8 139 71.2
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 8.6e-57 223.8 139 71.2
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 1.5e-56 223.0 137 66.4
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 1.9e-56 222.6 133 70.7
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 3.3e-56 221.9 139 66.9
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 3.3e-56 221.9 134 70.1
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 4.3e-56 221.5 134 68.7
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 7.3e-56 220.7 133 69.2
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 7.3e-56 220.7 134 69.4
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 9.5e-56 220.3 134 68.7
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 9.5e-56 220.3 133 69.2
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 1.6e-55 219.5 132 72.7
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 1.6e-55 219.5 133 69.2
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 1.6e-55 219.5 134 67.9
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 2.8e-55 218.8 132 72.0
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 2.8e-55 218.8 131 70.2
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 3.6e-55 218.4 136 69.1
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 3.6e-55 218.4 134 68.7
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 3.6e-55 218.4 133 67.7
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 3.6e-55 218.4 129 71.3
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 4.7e-55 218.0 139 67.6
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 6.1e-55 217.6 133 67.7
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 6.1e-55 217.6 134 67.2
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 1.0e-54 216.9 134 66.4
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 1.0e-54 216.9 134 67.2
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 1.0e-54 216.9 133 67.7
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 1.4e-54 216.5 132 68.2
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.8e-54 216.1 134 67.9
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 2.3e-54 215.7 133 66.9
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 2.3e-54 215.7 134 65.7
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 3.0e-54 215.3 132 69.7
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 3.0e-54 215.3 133 67.7
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 4.0e-54 214.9 131 68.7
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 4.0e-54 214.9 133 67.7
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 4.0e-54 214.9 143 64.3
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 8.9e-54 213.8 133 64.7
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 8.9e-54 213.8 137 65.0
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 8.9e-54 213.8 133 66.9
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 8.9e-54 213.8 130 68.5
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 8.9e-54 213.8 134 65.7
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 1.2e-53 213.4 123 72.4
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.5e-53 213.0 129 66.7
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 1.5e-53 213.0 137 65.0
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 2.0e-53 212.6 134 66.4
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 2.0e-53 212.6 134 66.4
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.0e-53 212.6 134 69.4
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 2.6e-53 212.2 133 67.7
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 2.6e-53 212.2 133 67.7
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 2.6e-53 212.2 133 67.7
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 3.4e-53 211.8 133 66.9
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 3.4e-53 211.8 133 64.7
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 3.4e-53 211.8 134 65.7
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 4.4e-53 211.5 134 68.7
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.4e-53 211.5 134 66.4
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 4.4e-53 211.5 134 64.9
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 5.8e-53 211.1 134 64.9
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 7.5e-53 210.7 139 62.6
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 7.5e-53 210.7 132 65.9
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 7.5e-53 210.7 133 66.9
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 9.8e-53 210.3 134 64.2
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 9.8e-53 210.3 133 63.9
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.3e-52 209.9 134 65.7
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 1.3e-52 209.9 130 66.9
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 1.3e-52 209.9 136 63.2
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 1.3e-52 209.9 135 65.9
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 1.7e-52 209.5 142 64.8
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.7e-52 209.5 140 61.4
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.7e-52 209.5 134 66.4
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 1.7e-52 209.5 134 65.7
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 2.2e-52 209.1 134 66.4
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 2.9e-52 208.8 133 65.4
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 2.9e-52 208.8 131 68.7
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 4.9e-52 208.0 133 63.9
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 4.9e-52 208.0 134 64.9
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.9e-52 208.0 120 72.5
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 4.9e-52 208.0 134 64.2
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 4.9e-52 208.0 131 67.9
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 6.4e-52 207.6 134 65.7
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 8.3e-52 207.2 134 64.2
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 1.4e-51 206.5 132 65.9
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 1.4e-51 206.5 134 64.9
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 1.8e-51 206.1 135 63.7
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 1.8e-51 206.1 129 66.7
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 2.4e-51 205.7 133 65.4
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 3.2e-51 205.3 140 62.9
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 5.4e-51 204.5 132 65.2
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 9.2e-51 203.8 133 61.7
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 1.2e-50 203.4 133 64.7
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 1.2e-50 203.4 123 69.1
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 2.0e-50 202.6 128 67.2
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 2.0e-50 202.6 137 62.8
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 2.7e-50 202.2 136 62.5
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 3.5e-50 201.8 136 64.0
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 3.5e-50 201.8 129 62.8
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 3.5e-50 201.8 133 63.2
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 4.6e-50 201.4 134 64.9
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 4.6e-50 201.4 129 67.4
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 6.0e-50 201.1 132 64.4
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 6.0e-50 201.1 137 62.8
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 6.0e-50 201.1 123 69.1
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 6.0e-50 201.1 137 62.8
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 7.8e-50 200.7 134 61.9
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 1.0e-49 200.3 133 65.4
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 1.7e-49 199.5 120 70.8
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 2.3e-49 199.1 134 61.2
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 3.9e-49 198.4 129 65.1
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 3.9e-49 198.4 136 61.0
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 6.6e-49 197.6 135 59.3
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 2.5e-48 195.7 134 61.2
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 9.5e-48 193.7 129 62.0
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 2.8e-47 192.2 134 61.2
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 3.6e-47 191.8 120 66.7
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 1.1e-46 190.3 126 62.7
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 1.8e-46 189.5 121 65.3
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 1.8e-46 189.5 118 66.9
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 5.2e-46 188.0 100 78.0
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 6.8e-46 187.6 178 51.1
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.5e-45 186.4 129 59.7
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 3.4e-45 185.3 119 64.7
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 3.4e-45 185.3 120 65.0
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 3.4e-45 185.3 102 74.5
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 3.7e-44 181.8 122 61.5
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 8.3e-44 180.6 118 64.4
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 9.2e-43 177.2 120 61.7
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.7e-41 172.9 134 54.5
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.1e-40 170.2 127 60.6
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 5.6e-40 167.9 120 60.8
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 4.7e-39 164.9 134 56.0
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 4.4e-37 158.3 126 54.8
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 9.9e-37 157.1 138 56.5
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 1.4e-35 153.3 146 46.6
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 4.6e-34 148.3 96 66.7
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 1.1e-32 143.7 102 64.7
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 2.1e-31 139.4 85 68.2
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 4.7e-31 138.3 81 76.5
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 3.4e-29 132.1 98 57.1
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 8.7e-25 117.5 77 66.2
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 5.2e-22 108.2 74 63.5
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.6e-21 104.4 111 48.6
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 2.2e-20 102.8 80 56.2
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 6.4e-20 101.3 63 68.3
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.6e-18 96.7 78 52.6


User provided reference genes

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