Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 5.7e-77 290.8 144 100.0
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 2.1e-55 219.2 141 70.9
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 1.4e-54 216.5 136 72.1
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.4e-54 216.5 139 71.2
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 4.0e-54 214.9 139 71.2
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.2e-53 213.4 139 70.5
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 2.6e-53 212.2 136 72.8
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 3.4e-53 211.8 140 70.7
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 9.8e-53 210.3 139 72.7
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 2.2e-52 209.1 139 69.8
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 2.2e-52 209.1 134 71.6
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 3.7e-52 208.4 139 68.3
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 4.9e-52 208.0 136 72.1
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 6.4e-52 207.6 139 68.3
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 8.3e-52 207.2 136 72.1
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 8.3e-52 207.2 139 70.5
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 8.3e-52 207.2 139 70.5
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 8.3e-52 207.2 139 66.9
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 1.1e-51 206.8 141 68.1
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 2.4e-51 205.7 139 66.2
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 3.2e-51 205.3 136 69.1
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 4.1e-51 204.9 136 70.6
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 5.4e-51 204.5 139 66.9
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 7.0e-51 204.1 139 68.3
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 9.2e-51 203.8 136 68.4
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 9.2e-51 203.8 139 67.6
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 9.2e-51 203.8 135 69.6
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 9.2e-51 203.8 136 69.1
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 1.2e-50 203.4 139 66.2
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.2e-50 203.4 136 69.9
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 1.6e-50 203.0 138 66.7
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 1.6e-50 203.0 128 74.2
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 2.0e-50 202.6 139 64.0
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 2.0e-50 202.6 139 66.9
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 2.7e-50 202.2 142 66.9
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 2.7e-50 202.2 135 66.7
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 2.7e-50 202.2 138 68.8
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 2.7e-50 202.2 138 68.8
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 2.7e-50 202.2 139 65.5
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 3.5e-50 201.8 135 68.1
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 3.5e-50 201.8 136 68.4
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 4.6e-50 201.4 136 67.6
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 4.6e-50 201.4 139 66.9
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 4.6e-50 201.4 139 66.9
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 4.6e-50 201.4 137 68.6
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 6.0e-50 201.1 133 67.7
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 6.0e-50 201.1 136 66.2
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 7.8e-50 200.7 137 65.7
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 1.0e-49 200.3 136 68.4
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 1.3e-49 199.9 139 64.0
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 1.7e-49 199.5 143 65.7
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 2.3e-49 199.1 136 68.4
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 2.3e-49 199.1 139 63.3
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 3.0e-49 198.7 139 65.5
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 3.0e-49 198.7 136 64.7
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 3.0e-49 198.7 138 67.4
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 3.0e-49 198.7 137 65.0
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 3.9e-49 198.4 136 67.6
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 3.9e-49 198.4 135 70.4
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 5.0e-49 198.0 139 65.5
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 5.0e-49 198.0 136 66.9
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 5.0e-49 198.0 136 66.9
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 5.0e-49 198.0 138 67.4
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 8.6e-49 197.2 140 65.0
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 8.6e-49 197.2 136 67.6
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 8.6e-49 197.2 136 64.7
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 1.1e-48 196.8 146 64.4
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 1.5e-48 196.4 139 64.7
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 1.9e-48 196.1 136 66.9
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 1.9e-48 196.1 137 66.4
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 2.5e-48 195.7 139 62.6
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 3.3e-48 195.3 139 64.7
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 3.3e-48 195.3 139 64.7
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 3.3e-48 195.3 136 68.4
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 3.3e-48 195.3 139 63.3
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 5.6e-48 194.5 139 64.0
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 5.6e-48 194.5 139 64.0
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 5.6e-48 194.5 136 68.4
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 7.3e-48 194.1 136 66.2
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 9.5e-48 193.7 139 63.3
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.2e-47 193.4 138 63.8
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.6e-47 193.0 138 63.8
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 1.6e-47 193.0 138 63.8
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 2.1e-47 192.6 167 56.3
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 2.1e-47 192.6 144 63.2
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 2.8e-47 192.2 136 66.2
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 2.8e-47 192.2 136 69.1
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 3.6e-47 191.8 125 69.6
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 6.2e-47 191.0 118 72.9
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 6.2e-47 191.0 139 62.6
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 1.1e-46 190.3 135 66.7
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 1.4e-46 189.9 158 58.9
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.3e-46 189.1 125 69.6
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 3.1e-46 188.7 139 61.9
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 5.2e-46 188.0 140 62.9
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 5.2e-46 188.0 140 62.9
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 8.9e-46 187.2 136 67.6
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 2.0e-45 186.0 136 59.6
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 2.6e-45 185.7 140 63.6
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 2.6e-45 185.7 136 63.2
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 3.4e-45 185.3 130 65.4
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 4.4e-45 184.9 155 58.1
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 9.8e-45 183.7 136 66.2
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.3e-44 183.3 139 61.9
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.3e-44 183.3 136 62.5
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 1.7e-44 183.0 114 71.9
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 1.7e-44 183.0 139 59.7
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 1.7e-44 183.0 143 60.1
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 2.2e-44 182.6 136 65.4
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 2.2e-44 182.6 137 61.3
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 3.7e-44 181.8 114 71.9
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 1.1e-43 180.3 139 59.7
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 1.1e-43 180.3 135 61.5
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 1.4e-43 179.9 114 71.1
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.9e-43 179.5 119 68.9
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 3.2e-43 178.7 139 59.0
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 5.4e-43 177.9 130 60.8
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 5.4e-43 177.9 136 62.5
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 7.0e-43 177.6 139 59.7
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 9.2e-43 177.2 136 61.0
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 2.1e-42 176.0 136 60.3
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 4.6e-42 174.9 139 58.3
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 1.7e-41 172.9 136 59.6
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 8.6e-41 170.6 203 46.3
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 1.5e-40 169.9 136 57.4
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 1.9e-40 169.5 113 68.1
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 1.9e-40 169.5 113 68.1
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 2.5e-40 169.1 136 58.1
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 2.8e-39 165.6 137 57.7
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 4.7e-39 164.9 110 67.3
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 1.1e-38 163.7 111 67.6
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.4e-38 163.3 139 57.6
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.4e-38 163.3 139 57.6
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 2.2e-36 156.0 112 66.1
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 4.6e-34 148.3 98 69.4
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.4e-30 136.7 139 51.1
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 1.8e-30 136.3 136 53.7
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 2.4e-27 125.9 138 47.1
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 5.4e-27 124.8 78 70.5
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 3.5e-26 122.1 134 46.3
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 3.9e-25 118.6 99 55.6
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 5.1e-25 118.2 99 54.5
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 7.3e-24 114.4 131 48.1
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 1.2e-23 113.6 128 46.9
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 2.4e-22 109.4 129 44.2
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 5.2e-22 108.2 133 45.9
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 6.9e-22 107.8 83 56.6
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 6.9e-22 107.8 142 38.0
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 5.8e-21 104.8 125 44.0
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 7.1e-19 97.8 125 41.6
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.3e-17 93.6 123 42.3
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 9.6e-16 87.4 111 45.0
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 3.6e-15 85.5 55 67.3
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 1.4e-14 83.6 98 46.9
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 2.0e-13 79.7 59 59.3
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 2.0e-13 79.7 65 55.4
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 1.3e-12 77.0 89 42.7
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 1.3e-12 77.0 48 72.9
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 1.3e-12 77.0 48 72.9
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 1.3e-12 77.0 48 72.9
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 1.7e-12 76.6 48 72.9
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 4.2e-11 72.0 133 33.1
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 2.1e-10 69.7 119 37.0
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 2.7e-10 69.3 49 65.3
Sabra12G0026800 Salix brachista HOM05D001043 ORTHO05D349056 2.1e-07 59.7 32 84.4


User provided reference genes

Program Settings