Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0753G084 Amborella trichopoda HOM05D003636 ORTHO05D026550 5.1e-51 204.1 104 100.0
ATR0665G579 Amborella trichopoda HOM05D003636 ORTHO05D005160 2.8e-33 145.2 102 73.5
ATR0681G056 Amborella trichopoda HOM05D003636 ORTHO05D026550 3.1e-32 141.7 84 86.9
ATR0691G029 Amborella trichopoda HOM05D003636 ORTHO05D026550 7.4e-26 120.6 94 68.1
TAR362G1191 Trochodendron aralioides HOM05D003636 ORTHO05D005160 1.4e-16 89.7 102 47.1
TAR633G1121 Trochodendron aralioides HOM05D003636 ORTHO05D026550 2.4e-16 89.0 102 50.0
MBI11_g20311_MAGBIO Magnolia biondii HOM05D003636 ORTHO05D005160 1.7e-14 82.8 117 43.6
Dinv44639 Davidia involucrata HOM05D003636 ORTHO05D005160 4.6e-12 74.7 102 41.2
Nn1g02632 Nelumbo nucifera HOM05D003636 ORTHO05D005160 4.6e-12 74.7 103 43.7
Hma1.2p1_1276F.1_g272050 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 1.0e-11 73.6 102 40.2
Oeu002605.1 Olea europaea HOM05D003636 ORTHO05D005160 1.0e-11 73.6 102 42.2
PSO017G1763 Papaver somniferum HOM05D003636 ORTHO05D005160 1.0e-11 73.6 103 43.7
Hma1.2p1_1798F.1_g302870 Hydrangea macrophylla HOM05D003636 ORTHO05D005160 1.4e-11 73.2 102 40.2
Sabra16G0282600 Salix brachista HOM05D003636 ORTHO05D005160 1.8e-11 72.8 102 43.1
Potri.001G415900 Populus trichocarpa HOM05D003636 ORTHO05D005160 2.3e-11 72.4 102 42.2
Actinidia05462 Actinidia chinensis HOM05D003636 ORTHO05D005160 3.9e-11 71.6 102 42.2
MSTRG.4105 Avicennia marina HOM05D003636 ORTHO05D005160 5.1e-11 71.2 106 44.3
Migut.G00443 Erythranthe guttata HOM05D003636 ORTHO05D005160 5.1e-11 71.2 102 45.1
Dinv00242 Davidia involucrata HOM05D003636 ORTHO05D005160 6.7e-11 70.9 102 39.2
PSO170G0718 Papaver somniferum HOM05D003636 ORTHO05D005160 6.7e-11 70.9 106 42.5
Zm00001eb056720 Zea mays HOM05D003636 ORTHO05D005160 1.1e-10 70.1 104 40.4
Dinv02719 Davidia involucrata HOM05D003636 ORTHO05D005160 1.5e-10 69.7 102 39.2
EL10Ac2g04633 Beta vulgaris HOM05D003636 ORTHO05D005160 3.3e-10 68.6 102 43.1
Aqoxy2G03579 Aquilegia oxysepala HOM05D003636 ORTHO05D005160 4.3e-10 68.2 102 42.2
vmacro15411 Vaccinium macrocarpon HOM05D003636 ORTHO05D005160 5.7e-10 67.8 102 38.2
Actinidia19047 Actinidia chinensis HOM05D003636 ORTHO05D005160 7.4e-10 67.4 102 40.2
Manes.02G210300 Manihot esculenta HOM05D003636 ORTHO05D005160 7.4e-10 67.4 106 40.6
Atru.chr4.2209 Acer truncatum HOM05D003636 ORTHO05D005160 9.7e-10 67.0 104 41.3
Hund05016 Selenicereus undatus HOM05D003636 ORTHO05D005160 9.7e-10 67.0 103 40.8
CANSAT11G0466 Cannabis sativa HOM05D003636 ORTHO05D005160 1.3e-09 66.6 102 43.1
ClCG09G021970 Citrullus lanatus HOM05D003636 ORTHO05D005160 1.3e-09 66.6 103 35.9
Os03g0740700 Oryza sativa ssp. japonica HOM05D003636 ORTHO05D005160 1.3e-09 66.6 103 40.8
Glyma.20G126100 Glycine max HOM05D003636 ORTHO05D005160 1.7e-09 66.2 100 39.0
CiPaw.02G115900 Carya illinoinensis HOM05D003636 ORTHO05D005160 2.2e-09 65.9 103 40.8
Ciclev10004361m.g Citrus clementina HOM05D003636 ORTHO05D005160 2.2e-09 65.9 102 39.2
Glyma.10G264200 Glycine max HOM05D003636 ORTHO05D005160 2.2e-09 65.9 100 39.0
Lj2A972G23 Lonicera japonica HOM05D003636 ORTHO05D005160 2.2e-09 65.9 102 39.2
QL02p053474 Quercus lobata HOM05D003636 ORTHO05D005160 2.2e-09 65.9 101 39.6
SalBow2G0018 Salvia bowleyana HOM05D003636 ORTHO05D005160 2.2e-09 65.9 102 40.2
AUR62014577 Chenopodium quinoa HOM05D003636 ORTHO05D005160 2.8e-09 65.5 103 41.7
Haze_11308 Corylus avellana HOM05D003636 ORTHO05D005160 2.8e-09 65.5 104 40.4
Haze_11311 Corylus avellana HOM05D003636 ORTHO05D005160 2.8e-09 65.5 104 40.4
Lalb_Chr21g0308481 Lupinus albus HOM05D003636 ORTHO05D005160 2.8e-09 65.5 99 38.4
RcHm_v2.0_Chr4g0390791 Rosa chinensis HOM05D003636 ORTHO05D005160 2.8e-09 65.5 102 42.2
RcHm_v2.0_Chr5g0000461 Rosa chinensis HOM05D003636 ORTHO05D005160 2.8e-09 65.5 102 42.2
TWI73G0437 Tripterygium wilfordii HOM05D003636 ORTHO05D005160 2.8e-09 65.5 102 40.2
arahy.Tifrunner.gnm1.ann1.7RJ7GD Arachis hypogaea HOM05D003636 ORTHO05D005160 3.7e-09 65.1 101 40.6
AUR62039385 Chenopodium quinoa HOM05D003636 ORTHO05D005160 3.7e-09 65.1 103 41.7
DCAR_024229 Daucus carota HOM05D003636 ORTHO05D005160 3.7e-09 65.1 102 41.2
Sc13g0005100 Simmondsia chinensis HOM05D003636 ORTHO05D005160 3.7e-09 65.1 102 40.2
Cfa008372 Carpinus fangiana HOM05D003636 ORTHO05D005160 4.8e-09 64.7 101 38.6
Rhsim02G0033400 Rhododendron simsii HOM05D003636 ORTHO05D005160 4.8e-09 64.7 102 39.2
GSVIVG01018130001 Vitis vinifera HOM05D003636 ORTHO05D005160 4.8e-09 64.7 102 41.2
arahy.Tifrunner.gnm1.ann1.T9EQBK Arachis hypogaea HOM05D003636 ORTHO05D005160 6.3e-09 64.3 101 39.6
CSS0043760 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 6.3e-09 64.3 102 40.2
Eucgr.G02714 Eucalyptus grandis HOM05D003636 ORTHO05D005160 6.3e-09 64.3 103 38.8
Solyc09g083420.3 Solanum lycopersicum HOM05D003636 ORTHO05D005160 1.1e-08 63.5 107 39.3
Sopen09g032360 Solanum pennellii HOM05D003636 ORTHO05D005160 1.1e-08 63.5 107 39.3
CDE06G0563 Ceratophyllum demersum HOM05D003636 ORTHO05D005160 1.4e-08 63.2 102 38.2
CAN.G1007.10 Capsicum annuum HOM05D003636 ORTHO05D005160 1.8e-08 62.8 107 39.3
Peaxi162Scf00813g00221 Petunia axillaris HOM05D003636 ORTHO05D005160 1.8e-08 62.8 98 41.8
Prupe.1G031700 Prunus persica HOM05D003636 ORTHO05D005160 1.8e-08 62.8 102 39.2
Rhsim07G0057600 Rhododendron simsii HOM05D003636 ORTHO05D005160 2.4e-08 62.4 102 37.3
PGSC0003DMG400015117 Solanum tuberosum HOM05D003636 ORTHO05D005160 2.4e-08 62.4 107 38.3
AT1G56290 Arabidopsis thaliana HOM05D003636 ORTHO05D005160 3.1e-08 62.0 100 38.0
PGR142G0130 Punica granatum HOM05D003636 ORTHO05D005160 4.1e-08 61.6 102 39.2
AL1G65900 Arabidopsis lyrata HOM05D003636 ORTHO05D005160 5.3e-08 61.2 100 37.0
A09p19180 Brassica napus HOM05D003636 ORTHO05D005160 5.3e-08 61.2 100 41.0
Carub.0002s0788 Capsella rubella HOM05D003636 ORTHO05D005160 6.9e-08 60.8 104 38.5
FvH4_4g02820 Fragaria vesca HOM05D003636 ORTHO05D005160 6.9e-08 60.8 102 43.1
CSS0034908 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 9.1e-08 60.5 101 36.6
CsaV3_5G014730 Cucumis sativus L. HOM05D003636 ORTHO05D005160 9.1e-08 60.5 102 33.3
FAN17G1850 Fragaria x ananassa HOM05D003636 ORTHO05D005160 9.1e-08 60.5 102 41.2
Nitab4.5_0000525g0280 Nicotiana tabacum HOM05D003636 ORTHO05D005160 9.1e-08 60.5 102 37.3
ATR0681G164 Amborella trichopoda HOM05D003636 ORTHO05D063035 1.2e-07 60.1 51 66.7
CSS0010332 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 1.2e-07 60.1 101 37.6
CSS0023771 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 1.2e-07 60.1 102 37.3
CSS0030608 Camellia sinensis var. sinensis HOM05D003636 ORTHO05D005160 1.2e-07 60.1 101 37.6
Lsat_1_v5_gn_5_72980 Lactuca sativa HOM05D003636 ORTHO05D005160 1.2e-07 60.1 102 37.3
Lj2g0003499 Lotus japonicus HOM05D003636 ORTHO05D005160 1.2e-07 60.1 100 42.0
Nitab4.5_0001418g0070 Nicotiana tabacum HOM05D003636 ORTHO05D005160 1.2e-07 60.1 107 37.4
Sed0019602 Sechium edule HOM05D003636 ORTHO05D005160 1.2e-07 60.1 104 37.5
COL.COLO4_15803 Corchorus olitorius HOM05D003636 ORTHO05D005160 1.5e-07 59.7 101 42.6
VMungo0720G2747 Vigna mungo HOM05D003636 ORTHO05D005160 1.5e-07 59.7 102 35.3
CARHR289840 Cardamine hirsuta HOM05D003636 ORTHO05D005160 2.0e-07 59.3 100 36.0
Ca_11090_v3 Cicer arietinum L. HOM05D003636 ORTHO05D005160 2.0e-07 59.3 101 35.6
THA.LOC104801942 Tarenaya hassleriana HOM05D003636 ORTHO05D005160 2.0e-07 59.3 99 36.4
BcaC04g22040 Brassica carinata HOM05D003636 ORTHO05D005160 2.6e-07 58.9 99 40.4
Gohir.A06G066800 Gossypium hirsutum HOM05D003636 ORTHO05D005160 2.6e-07 58.9 90 40.0
BcaB07g31117 Brassica carinata HOM05D003636 ORTHO05D005160 3.4e-07 58.5 98 41.8
Cc03_g04930 Coffea canephora HOM05D003636 ORTHO05D005160 3.4e-07 58.5 102 39.2
Gorai.010G076500 Gossypium raimondii HOM05D003636 ORTHO05D005160 3.4e-07 58.5 90 40.0
Thecc.04G247000 Theobroma cacao HOM05D003636 ORTHO05D005160 3.4e-07 58.5 93 40.9
Ah.09g223830 Amaranthus hybridus HOM05D003636 ORTHO05D005160 4.5e-07 58.2 102 37.3
Thhalv10023321m.g Eutrema salsugineum HOM05D003636 ORTHO05D005160 4.5e-07 58.2 99 36.4
HanXRQChr06g0181471 Helianthus annuus HOM05D003636 ORTHO05D005160 4.5e-07 58.2 108 37.0
TPR.G13854 Trifolium pratense HOM05D003636 ORTHO05D005160 4.5e-07 58.2 102 33.3
ECA233G4087 Erigeron canadensis HOM05D003636 ORTHO05D005160 5.9e-07 57.8 110 35.5
Lj5g0001808 Lotus japonicus HOM05D003636 ORTHO05D005160 5.9e-07 57.8 99 40.4
Medtr1g107575 Medicago truncatula HOM05D003636 ORTHO05D005160 5.9e-07 57.8 99 36.4
Ah.10g037290 Amaranthus hybridus HOM05D003636 ORTHO05D005160 7.7e-07 57.4 103 34.0
C09p24190 Brassica napus HOM05D003636 ORTHO05D005160 7.7e-07 57.4 99 40.4
MELO3C015028.2 Cucumis melo HOM05D003636 ORTHO05D005160 7.7e-07 57.4 102 32.4
Gohir.D06G065300 Gossypium hirsutum HOM05D003636 ORTHO05D005160 7.7e-07 57.4 90 40.0
Phvul.007G037800 Phaseolus vulgaris HOM05D003636 ORTHO05D005160 7.7e-07 57.4 103 35.9
MD16G1209600 Malus domestica HOM05D003636 ORTHO05D005160 1.0e-06 57.0 102 37.3
SEGI_36314 Sequoiadendron giganteum HOM05D003636 ORTHO05D005160 1.0e-06 57.0 117 35.0
Thecc.05G005400 Theobroma cacao HOM05D003636 ORTHO05D005160 1.0e-06 57.0 94 39.4
Aa31LG2G11570 Aethionema arabicum HOM05D003636 ORTHO05D005160 1.3e-06 56.6 99 35.4
Manes.02G214300 Manihot esculenta HOM05D003636 ORTHO05D005160 1.7e-06 56.2 102 38.2
HanXRQChr09g0258341 Helianthus annuus HOM05D003636 ORTHO05D005160 5.0e-06 54.7 102 37.3
unitig_736.g22446 Utricularia gibba HOM05D003636 ORTHO05D005160 5.0e-06 54.7 103 36.9


User provided reference genes

Program Settings