Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0753G012 Amborella trichopoda HOM05D006041 ORTHO05D007473 1.1e-260 902.9 481 100.0
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 3.5e-139 499.2 485 57.9
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 7.6e-134 481.5 486 56.2
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 1.7e-133 480.3 477 57.2
Nn4g24305 Nelumbo nucifera HOM05D006041 ORTHO05D007473 5.5e-132 475.3 483 56.3
Dinv26256 Davidia involucrata HOM05D006041 ORTHO05D007473 1.2e-131 474.2 483 55.3
Haze_10913 Corylus avellana HOM05D006041 ORTHO05D007473 1.5e-129 467.2 512 53.3
Gorai.005G158800 Gossypium raimondii HOM05D006041 ORTHO05D007473 2.5e-129 466.5 488 55.7
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 1.1e-127 461.1 481 55.3
TAR629G0174 Trochodendron aralioides HOM05D006041 ORTHO05D007473 2.4e-127 459.9 479 54.9
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 6.5e-125 451.8 488 54.9
TWI74G1002 Tripterygium wilfordii HOM05D006041 ORTHO05D007473 6.5e-125 451.8 492 53.3
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 8.4e-125 451.4 510 52.0
vmacro00556 Vaccinium macrocarpon HOM05D006041 ORTHO05D007473 1.4e-124 450.7 493 53.5
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 3.2e-124 449.5 484 52.5
Manes.15G133200 Manihot esculenta HOM05D006041 ORTHO05D007473 4.2e-124 449.1 489 53.6
Lj6A740T67 Lonicera japonica HOM05D006041 ORTHO05D007473 5.5e-124 448.7 479 54.1
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 5.5e-124 448.7 485 54.0
Thecc.02G290600 Theobroma cacao HOM05D006041 ORTHO05D007473 9.3e-124 448.0 497 53.7
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 2.7e-123 446.4 488 53.9
TAR371G0590 Trochodendron aralioides HOM05D006041 ORTHO05D007473 6.1e-123 445.3 491 53.8
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 1.0e-122 444.5 488 54.9
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 1.0e-122 444.5 488 54.9
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 1.8e-122 443.7 491 52.5
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 3.0e-122 443.0 482 53.9
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 8.7e-122 441.4 484 51.9
Lalb_Chr05g0222281 Lupinus albus HOM05D006041 ORTHO05D007473 1.9e-121 440.3 480 55.0
Duzib251G0740 Durio zibethinus HOM05D006041 ORTHO05D007473 2.5e-121 439.9 483 54.9
Duzib268G1057 Durio zibethinus HOM05D006041 ORTHO05D007473 7.4e-121 438.3 495 52.9
VMungo0251G2799 Vigna mungo HOM05D006041 ORTHO05D007473 6.3e-120 435.3 481 53.0
Eucgr.G02114 Eucalyptus grandis HOM05D006041 ORTHO05D007473 6.9e-119 431.8 482 51.7
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 9.0e-119 431.4 487 52.4
Sabra08G0102300 Salix brachista HOM05D006041 ORTHO05D007473 1.5e-118 430.6 489 53.8
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 3.4e-118 429.5 489 51.3
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 3.4e-118 429.5 488 52.0
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 4.5e-118 429.1 485 53.6
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 5.9e-118 428.7 487 52.2
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 7.7e-118 428.3 499 50.9
AUR62003915 Chenopodium quinoa HOM05D006041 ORTHO05D007473 1.0e-117 427.9 499 48.9
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 1.0e-117 427.9 485 50.3
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 1.3e-117 427.6 488 52.7
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 2.9e-117 426.4 478 50.8
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 2.9e-117 426.4 473 50.5
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 2.9e-117 426.4 519 49.1
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 3.8e-117 426.0 481 53.2
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 3.2e-116 422.9 478 52.1
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 3.2e-116 422.9 481 50.9
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 5.5e-116 422.2 474 50.8
Medtr8g104930 Medicago truncatula HOM05D006041 ORTHO05D007473 7.2e-116 421.8 480 51.7
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 9.4e-116 421.4 493 49.7
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 1.2e-115 421.0 480 50.8
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 1.2e-115 421.0 480 50.8
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 4.6e-115 419.1 485 51.8
Prupe.1G331600 Prunus persica HOM05D006041 ORTHO05D007473 4.6e-115 419.1 487 50.5
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 3.9e-114 416.0 497 51.3
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 5.1e-114 415.6 487 50.3
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 5.1e-114 415.6 483 49.3
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 6.7e-114 415.2 488 51.6
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 6.7e-114 415.2 493 50.3
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 1.5e-113 414.1 488 51.2
MD16G1020600 Malus domestica HOM05D006041 ORTHO05D007473 1.5e-113 414.1 493 50.7
Sp2g13100 Schrenkiella parvula HOM05D006041 ORTHO05D007473 5.7e-113 412.1 482 50.2
THA.LOC104805081 Tarenaya hassleriana HOM05D006041 ORTHO05D007473 5.7e-113 412.1 491 48.5
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 1.3e-112 411.0 475 50.5
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 1.7e-112 410.6 494 49.6
BcaC06g31287 Brassica carinata HOM05D006041 ORTHO05D007473 2.2e-112 410.2 475 50.7
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 4.8e-112 409.1 478 49.4
FvH4_4g33820 Fragaria vesca HOM05D006041 ORTHO05D007473 6.3e-112 408.7 483 51.1
Psat7g009240 Pisum sativum HOM05D006041 ORTHO05D007473 8.2e-112 408.3 487 50.5
ClCG01G006460 Citrullus lanatus HOM05D006041 ORTHO05D007473 1.1e-111 407.9 485 50.5
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 1.4e-111 407.5 479 50.7
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 1.8e-111 407.1 497 48.9
Ciclev10015068m.g Citrus clementina HOM05D006041 ORTHO05D007473 3.1e-111 406.4 492 49.6
HanXRQChr08g0212441 Helianthus annuus HOM05D006041 ORTHO05D007473 4.1e-111 406.0 485 49.9
BraA06t27296Z Brassica rapa HOM05D006041 ORTHO05D007473 5.3e-111 405.6 475 50.3
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 7.7e-110 401.7 481 50.3
FAN12G3784 Fragaria x ananassa HOM05D006041 ORTHO05D007473 1.0e-109 401.4 495 49.7
Ca_17289_v3 Cicer arietinum L. HOM05D006041 ORTHO05D007473 1.4e-108 397.5 484 48.3
FAN22G1094 Fragaria x ananassa HOM05D006041 ORTHO05D007473 2.5e-108 396.7 502 48.4
PSO478G4621 Papaver somniferum HOM05D006041 ORTHO05D007473 4.2e-108 396.0 491 49.1
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 7.2e-108 395.2 484 48.8
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 1.2e-107 394.4 481 50.5
CARHR144220 Cardamine hirsuta HOM05D006041 ORTHO05D007473 1.6e-107 394.0 481 48.9
FAN17G0347 Fragaria x ananassa HOM05D006041 ORTHO05D007473 1.6e-107 394.0 489 48.7
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 6.1e-107 392.1 485 48.5
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 7.9e-107 391.7 512 48.8
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 7.9e-107 391.7 480 49.8
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 7.9e-107 391.7 480 49.6
PSO017G0247 Papaver somniferum HOM05D006041 ORTHO05D007473 3.0e-106 389.8 491 48.5
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 5.1e-106 389.0 486 50.2
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 1.5e-105 387.5 466 48.3
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 3.1e-103 379.8 474 49.8
Sed0015632 Sechium edule HOM05D006041 ORTHO05D007473 4.1e-103 379.4 378 54.2
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 1.5e-102 377.5 383 53.3
Manes.17G082400 Manihot esculenta HOM05D006041 ORTHO05D007473 2.9e-101 373.2 479 47.8
CiPaw.05G190300 Carya illinoinensis HOM05D006041 ORTHO05D007473 3.0e-98 363.2 400 52.5
Dinv18641 Davidia involucrata HOM05D006041 ORTHO05D007473 8.2e-96 355.1 432 50.5
QL03p034952 Quercus lobata HOM05D006041 ORTHO05D007473 1.6e-94 350.9 435 50.8
Gohir.D02G141500 Gossypium hirsutum HOM05D006041 ORTHO05D007473 2.0e-94 350.5 414 51.7
Gohir.A03G117900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 2.5e-92 343.6 419 50.1
Aqoxy3G00037 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 1.4e-90 337.8 505 44.2
AUR62038228 Chenopodium quinoa HOM05D006041 ORTHO05D007473 4.0e-90 336.3 489 43.1
Potri.008G133700 Populus trichocarpa HOM05D006041 ORTHO05D007473 3.7e-88 329.7 409 49.9
SEGI_21307 Sequoiadendron giganteum HOM05D006041 ORTHO05D007473 1.0e-82 311.6 394 49.5
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 1.6e-78 297.7 296 54.1
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 2.9e-77 293.5 481 39.5
SGA_v2.0_scaffold151G36726 Striga asiatica HOM05D006041 ORTHO05D007473 1.7e-72 277.7 467 41.1
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 2.9e-72 276.9 483 38.9
CDE06G1197 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 2.7e-70 270.4 481 39.9
GSVIVG01011678001 Vitis vinifera HOM05D006041 ORTHO05D007473 6.8e-66 255.8 191 70.7
Hma1.2p1_0089F.1_g045430 Hydrangea macrophylla HOM05D006041 ORTHO05D007473 9.5e-60 235.3 315 47.9
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 2.3e-58 230.7 228 54.4
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 5.2e-58 229.6 320 42.8
HPP92_009644 Vanilla planifolia HOM05D006041 ORTHO05D007473 4.4e-57 226.5 244 51.6
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 1.1e-52 211.8 223 53.8
Oeu063578.1 Olea europaea HOM05D006041 ORTHO05D007473 1.6e-51 208.0 314 42.7
Actinidia34032 Actinidia chinensis HOM05D006041 ORTHO05D007473 2.1e-51 207.6 322 43.5
Aa31LG3G2990 Aethionema arabicum HOM05D006041 ORTHO05D007473 2.8e-51 207.2 230 53.9
Mapoly0081s0058 Marchantia polymorpha HOM05D006041 ORTHO05D007473 1.7e-45 188.0 356 36.2
Aa31sc215G20 Aethionema arabicum HOM05D006041 ORTHO05D007473 7.3e-36 156.0 151 59.6
SGA_v2.0_scaffold151G36758 Striga asiatica HOM05D006041 ORTHO05D007473 1.6e-35 154.8 238 40.8
Lalb_Chr16g0387681 Lupinus albus HOM05D006041 ORTHO05D007473 1.6e-30 138.3 315 37.5
arahy.Tifrunner.gnm1.ann1.I8TFGP Arachis hypogaea HOM05D006041 ORTHO05D007473 1.9e-28 131.3 302 32.5
Psat7g181280 Pisum sativum HOM05D006041 ORTHO05D007473 1.3e-21 108.6 152 39.5
SMO276G0024 Selaginella moellendorffii HOM05D006041 ORTHO05D007473 3.3e-20 104.0 94 55.3
Actinidia25876 Actinidia chinensis HOM05D001822 ORTHO05D001744 1.2e-17 95.5 108 45.4
CAN.G3.6 Capsicum annuum HOM05D006041 ORTHO05D007473 8.4e-16 89.4 205 32.2
MCO04G546 Micromonas commoda HOM05D006041 ORTHO05D007473 3.2e-15 87.4 253 30.4
QL10p059701 Quercus lobata HOM05D006041 ORTHO05D007473 3.2e-15 87.4 101 46.5
Actinidia34031 Actinidia chinensis HOM05D006041 ORTHO05D007473 6.9e-10 69.7 74 54.1
Aqoxy4G01147 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 9.3e-07 59.3 57 59.6
BcaC02g09488 Brassica carinata HOM05D006530 ORTHO05D008283 1.2e-06 58.9 82 35.4
Potri.014G160400 Populus trichocarpa HOM05D006530 ORTHO05D008283 6.1e-06 56.6 73 37.0


User provided reference genes

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