Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 2.4e-256 888.3 435 100.0
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 1.9e-91 340.5 448 45.1
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 3.2e-83 313.2 441 42.9
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 5.4e-78 295.8 438 41.8
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 8.6e-76 288.5 433 43.9
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 1.5e-75 287.7 464 41.4
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 2.8e-74 283.5 454 41.0
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 6.1e-74 282.3 465 39.8
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 8.0e-74 282.0 444 42.6
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 1.4e-73 281.2 447 41.4
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 5.2e-73 279.3 450 41.6
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 1.2e-72 278.1 585 34.2
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 1.2e-72 278.1 436 41.1
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 2.0e-72 277.3 429 39.6
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 4.4e-72 276.2 429 39.6
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 9.8e-72 275.0 455 42.0
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 1.3e-71 274.6 440 40.2
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 1.7e-71 274.2 448 41.1
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 2.2e-71 273.9 424 41.5
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 4.9e-71 272.7 430 40.7
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 2.4e-70 270.4 445 40.4
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 4.1e-70 269.6 441 39.5
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 9.2e-70 268.5 430 40.7
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 9.2e-70 268.5 463 38.9
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 1.6e-69 267.7 454 40.3
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 2.0e-69 267.3 430 39.5
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 2.0e-69 267.3 440 40.9
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 2.0e-69 267.3 457 38.7
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 2.7e-69 266.9 444 39.6
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 3.5e-69 266.5 490 38.2
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 3.5e-69 266.5 431 42.5
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 4.6e-69 266.2 438 39.7
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 1.0e-68 265.0 435 40.2
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 1.0e-68 265.0 453 39.1
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 1.7e-68 264.2 431 41.5
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 2.9e-68 263.5 463 38.7
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 5.0e-68 262.7 433 38.6
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 6.6e-68 262.3 433 38.8
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 1.9e-67 260.8 456 39.3
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 1.9e-67 260.8 430 41.2
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 1.2e-66 258.1 429 39.2
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 1.6e-66 257.7 446 40.4
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 2.1e-66 257.3 434 38.5
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 2.8e-66 256.9 428 39.5
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 4.7e-66 256.1 435 40.0
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 8.0e-66 255.4 427 38.6
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 1.8e-65 254.2 446 38.1
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 2.3e-65 253.8 440 39.3
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 4.0e-65 253.1 439 38.0
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 8.9e-65 251.9 430 39.1
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 3.4e-64 250.0 426 38.7
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 5.8e-64 249.2 436 38.1
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 1.3e-63 248.1 421 39.4
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 1.7e-63 247.7 441 39.0
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 2.2e-63 247.3 436 38.3
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 2.9e-63 246.9 428 38.8
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 3.7e-63 246.5 441 39.0
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 4.9e-63 246.1 452 36.5
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 4.9e-63 246.1 431 36.9
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 6.4e-63 245.7 427 38.2
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 1.1e-62 245.0 429 38.9
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 4.1e-62 243.0 428 37.9
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 5.4e-62 242.7 434 37.3
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.0e-61 240.7 428 37.6
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 2.0e-61 240.7 435 36.8
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 3.5e-61 240.0 433 37.0
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 1.7e-60 237.7 437 37.1
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 2.3e-60 237.3 432 39.6
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 1.1e-59 235.0 431 36.2
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 3.3e-59 233.4 431 35.3
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 4.3e-59 233.0 420 36.4
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 5.6e-59 232.6 434 35.7
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 1.2e-58 231.5 498 32.3
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 1.6e-58 231.1 427 36.8
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 2.1e-58 230.7 437 36.2
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 2.8e-58 230.3 426 38.3
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 3.6e-58 229.9 437 35.2
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 1.8e-57 227.6 302 45.7
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 3.1e-57 226.9 438 34.9
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 4.0e-57 226.5 437 35.0
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 4.0e-57 226.5 494 32.6
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 5.2e-57 226.1 437 34.3
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 2.6e-56 223.8 436 34.4
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 2.6e-56 223.8 436 34.4
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 6.4e-55 219.2 430 35.3
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 6.4e-55 219.2 432 34.0
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 7.1e-54 215.7 430 34.9
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 4.6e-53 213.0 434 37.8
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 3.9e-52 209.9 430 36.3
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 5.1e-52 209.5 409 35.2
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 1.5e-51 208.0 411 34.5
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 1.1e-49 201.8 432 33.3
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 4.0e-49 199.9 170 60.0
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 1.3e-47 194.9 168 57.7
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 4.9e-47 193.0 169 58.6
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.4e-46 190.7 429 33.8
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 7.8e-45 185.7 374 32.4
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 9.6e-43 178.7 432 30.1
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.2e-42 178.3 378 36.0
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 1.6e-42 177.9 159 54.1
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 4.4e-40 169.9 167 53.9
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 7.6e-40 169.1 414 33.1
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.9e-39 167.2 381 34.6
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 5.4e-38 162.9 171 49.7
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 1.2e-37 161.8 130 59.2
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 1.1e-30 138.7 428 27.3
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 1.0e-28 132.1 152 48.7
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 1.9e-27 127.9 423 25.5
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 3.3e-27 127.1 351 31.9
CAN.G337.122 Capsicum annuum HOM05D007003 ORTHO05D008499 6.4e-23 112.8 77 72.7
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 1.1e-22 112.1 84 63.1
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 1.4e-22 111.7 428 25.0
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 2.5e-19 100.9 74 60.8
MD03G1204100 Malus domestica HOM05D007003 ORTHO05D008499 3.3e-19 100.5 83 55.4
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 9.6e-19 99.0 90 50.0
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 1.4e-17 95.1 136 37.5
TPR.G1231 Trifolium pratense HOM05D007003 ORTHO05D008499 9.0e-17 92.4 85 50.6
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 9.0e-17 92.4 79 48.1
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 4.2e-14 83.6 55 67.3
Actinidia05099 Actinidia chinensis HOM05D001273 ORTHO05D000023 2.1e-10 71.2 59 59.3


User provided reference genes

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