Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 3.9e-67 258.1 138 100.0
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 5.3e-56 221.1 138 84.1
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 1.5e-55 219.5 138 83.3
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 2.0e-55 219.2 139 84.9
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 3.5e-55 218.4 138 84.1
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 5.9e-55 217.6 138 83.3
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 5.9e-55 217.6 138 82.6
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 5.9e-55 217.6 138 81.9
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 7.7e-55 217.2 140 82.1
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.0e-54 216.9 138 83.3
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.0e-54 216.9 138 81.9
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.3e-54 216.5 138 81.9
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.3e-54 216.5 138 81.9
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.3e-54 216.5 139 84.2
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.7e-54 216.1 138 81.9
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 2.9e-54 215.3 141 83.0
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 3.8e-54 214.9 138 82.6
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 3.8e-54 214.9 141 83.0
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.8e-54 214.9 139 83.5
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 5.0e-54 214.5 140 82.9
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 5.0e-54 214.5 139 83.5
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 5.0e-54 214.5 139 82.7
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 8.5e-54 213.8 139 82.7
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 8.5e-54 213.8 139 82.7
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 8.5e-54 213.8 138 81.2
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 1.5e-53 213.0 138 80.4
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 1.9e-53 212.6 140 81.4
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 5.5e-53 211.1 138 79.7
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 7.2e-53 210.7 139 79.1
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 9.4e-53 210.3 139 81.3
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 1.2e-52 209.9 138 79.0
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 1.6e-52 209.5 138 81.2
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 3.6e-52 208.4 139 79.9
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 6.1e-52 207.6 140 77.9
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 8.0e-52 207.2 139 79.9
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 1.0e-51 206.8 139 79.9
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 1.4e-51 206.5 139 79.9
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 1.4e-51 206.5 142 78.2
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 1.4e-51 206.5 139 81.3
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 2.3e-51 205.7 139 79.1
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 2.3e-51 205.7 137 76.6
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 3.0e-51 205.3 140 78.6
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 3.9e-51 204.9 152 76.3
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 5.2e-51 204.5 138 79.0
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 6.7e-51 204.1 141 78.0
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 6.7e-51 204.1 137 75.9
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 6.7e-51 204.1 140 77.9
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 6.7e-51 204.1 138 77.5
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 8.8e-51 203.8 139 79.1
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 8.8e-51 203.8 139 79.1
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.5e-50 203.0 138 76.1
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.5e-50 203.0 140 78.6
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 1.5e-50 203.0 137 76.6
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 2.0e-50 202.6 138 75.4
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 2.0e-50 202.6 137 76.6
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 2.0e-50 202.6 137 75.9
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 2.6e-50 202.2 138 75.4
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 3.3e-50 201.8 138 75.4
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 3.3e-50 201.8 143 74.8
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 4.4e-50 201.4 137 75.9
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 5.7e-50 201.1 139 76.3
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 1.3e-49 199.9 137 75.9
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 1.7e-49 199.5 138 75.4
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 1.7e-49 199.5 138 78.3
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 2.2e-49 199.1 138 75.4
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 2.2e-49 199.1 138 78.3
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 2.2e-49 199.1 140 75.7
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 2.2e-49 199.1 140 77.1
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 3.7e-49 198.4 147 74.1
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.8e-49 198.0 138 74.6
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 4.8e-49 198.0 143 75.5
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 6.3e-49 197.6 141 74.5
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 6.3e-49 197.6 138 76.8
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 1.1e-48 196.8 143 74.8
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 1.8e-48 196.1 148 73.6
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 7.0e-48 194.1 140 75.0
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 9.1e-48 193.7 141 74.5
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 1.6e-47 193.0 140 75.0
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 2.0e-47 192.6 164 67.1
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 3.5e-47 191.8 140 75.0
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 3.5e-47 191.8 138 73.9
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 3.5e-47 191.8 140 73.6
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 4.5e-47 191.4 141 75.9
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 5.9e-47 191.0 141 73.0
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 1.7e-46 189.5 141 75.2
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 2.9e-46 188.7 138 71.0
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 2.9e-46 188.7 141 72.3
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 8.5e-46 187.2 160 65.0
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 1.9e-45 186.0 139 73.4
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.5e-45 185.7 138 71.7
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 7.2e-45 184.1 151 68.2
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 7.2e-45 184.1 151 68.2
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 9.4e-45 183.7 172 59.9
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 1.2e-44 183.3 140 72.1
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 1.2e-44 183.3 149 68.5
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 1.6e-44 183.0 112 87.5
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 6.1e-44 181.0 144 69.4
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 6.1e-44 181.0 144 69.4
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 4.0e-43 178.3 146 67.1
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 6.8e-43 177.6 148 66.9
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 1.2e-42 176.8 134 71.6
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 2.0e-42 176.0 152 65.8
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 2.0e-42 176.0 138 67.4
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 4.4e-42 174.9 155 64.5
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 4.4e-42 174.9 155 64.5
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 5.7e-42 174.5 113 82.3
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 6.3e-41 171.0 136 68.4
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 8.3e-41 170.6 176 56.2
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 8.3e-41 170.6 134 70.9
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 5.4e-40 167.9 168 56.5
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 1.6e-39 166.4 114 75.4
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 4.5e-39 164.9 136 66.9
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 5.9e-39 164.5 138 63.0
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.7e-38 162.9 166 56.6
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 5.5e-37 157.9 113 76.1
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 9.4e-37 157.1 115 73.9
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 1.6e-36 156.4 119 73.1
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 1.4e-35 153.3 126 71.4
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 1.8e-35 152.9 139 62.6
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 2.3e-35 152.5 112 73.2
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 6.3e-33 144.4 167 53.9
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 5.4e-32 141.4 134 61.2
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 5.4e-32 141.4 134 62.7
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 1.6e-31 139.8 131 63.4
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 3.5e-31 138.7 108 69.4
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 3.5e-31 138.7 97 76.3
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 3.5e-31 138.7 136 58.1
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 5.9e-31 137.9 129 62.0
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 1.2e-28 130.2 155 53.5
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.3e-27 125.9 118 61.0
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 2.6e-26 122.5 94 71.3
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 5.7e-26 121.3 131 54.2
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 9.8e-26 120.6 85 75.3
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 2.2e-25 119.4 81 79.0
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 1.4e-24 116.7 85 72.9
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 3.2e-24 115.5 80 77.5
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 5.4e-24 114.8 80 76.2
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 7.0e-24 114.4 80 76.2
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.0e-23 112.8 76 81.6
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 4.6e-23 111.7 77 77.9
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 6.6e-22 107.8 138 50.0
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 8.6e-22 107.5 134 52.2
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.6e-20 103.2 69 75.4
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 2.8e-20 102.4 69 73.9
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 1.4e-19 100.1 69 75.4
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 4.0e-19 98.6 58 87.9
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 2.4e-16 89.4 100 54.0
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 9.2e-16 87.4 70 65.7
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 1.2e-15 87.0 69 69.6
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 8.6e-14 80.9 57 75.4
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 4.3e-13 78.6 77 57.1
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 3.1e-11 72.4 130 37.7
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 5.8e-10 68.2 72 56.9
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 5.8e-10 68.2 72 56.9
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 1.4e-08 63.5 55 60.0
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 1.0e-06 57.4 49 61.2
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 3.0e-06 55.8 51 56.9
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 5.1e-06 55.1 51 56.9


User provided reference genes

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