Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0752G166 Amborella trichopoda HOM05D005227 ORTHO05D006379 1.0e-48 196.4 100 100.0
CSS0013199 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 9.2e-42 173.3 99 85.9
Nn7g38372 Nelumbo nucifera HOM05D005227 ORTHO05D006379 1.0e-40 169.9 99 84.8
Cpa.g.c40334 Carica papaya HOM05D005227 ORTHO05D006379 5.1e-40 167.5 99 83.8
Dinv32750 Davidia involucrata HOM05D005227 ORTHO05D006379 1.1e-39 166.4 98 82.7
Thecc.03G046200 Theobroma cacao HOM05D005227 ORTHO05D006379 1.9e-39 165.6 98 82.7
GSVIVG01012160001 Vitis vinifera HOM05D005227 ORTHO05D006379 3.3e-39 164.9 100 81.0
TWI81G0571 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 4.3e-39 164.5 99 82.8
Actinidia33652 Actinidia chinensis HOM05D005227 ORTHO05D006379 5.6e-39 164.1 99 81.8
ClCG03G004140 Citrullus lanatus HOM05D005227 ORTHO05D006379 9.5e-39 163.3 99 80.8
Lalb_Chr10g0097141 Lupinus albus HOM05D005227 ORTHO05D006379 9.5e-39 163.3 98 82.7
Dinv26307 Davidia involucrata HOM05D005227 ORTHO05D006379 1.2e-38 162.9 98 78.6
MELO3C002397.2 Cucumis melo HOM05D005227 ORTHO05D006379 1.6e-38 162.5 98 80.6
Cc09_g04960 Coffea canephora HOM05D005227 ORTHO05D006379 2.8e-38 161.8 98 78.6
CsaV3_1G010070 Cucumis sativus L. HOM05D005227 ORTHO05D006379 3.6e-38 161.4 99 79.8
Duzib084G1247 Durio zibethinus HOM05D005227 ORTHO05D006379 6.2e-38 160.6 98 78.6
CAN.G585.8 Capsicum annuum HOM05D005227 ORTHO05D006379 8.1e-38 160.2 98 79.6
MSTRG.21442 Avicennia marina HOM05D005227 ORTHO05D006379 1.1e-37 159.8 99 79.8
Duzib205G0364 Durio zibethinus HOM05D005227 ORTHO05D006379 1.1e-37 159.8 98 79.6
Migut.D00502 Erythranthe guttata HOM05D005227 ORTHO05D006379 1.4e-37 159.5 98 78.6
PGR004G2312 Punica granatum HOM05D005227 ORTHO05D006379 1.4e-37 159.5 98 78.6
Atru.chr8.505 Acer truncatum HOM05D005227 ORTHO05D006379 1.8e-37 159.1 99 76.8
TAR627G1207 Trochodendron aralioides HOM05D005227 ORTHO05D006379 1.8e-37 159.1 98 78.6
COL.COLO4_36891 Corchorus olitorius HOM05D005227 ORTHO05D006379 2.4e-37 158.7 98 78.6
SGA_v2.0_scaffold1G00678 Striga asiatica HOM05D005227 ORTHO05D006379 2.4e-37 158.7 98 76.5
QL08p045548 Quercus lobata HOM05D005227 ORTHO05D006379 3.1e-37 158.3 98 76.5
TWI15G1171 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 3.1e-37 158.3 99 78.8
Glyma.07G072800 Glycine max HOM05D005227 ORTHO05D006379 4.0e-37 157.9 99 78.8
Sed0019581 Sechium edule HOM05D005227 ORTHO05D006379 4.0e-37 157.9 99 76.8
Eucgr.D00008 Eucalyptus grandis HOM05D005227 ORTHO05D006379 5.2e-37 157.5 98 77.6
Gohir.D11G171900 Gossypium hirsutum HOM05D005227 ORTHO05D006379 6.8e-37 157.1 98 78.6
Gorai.007G184300 Gossypium raimondii HOM05D005227 ORTHO05D006379 6.8e-37 157.1 98 78.6
HanXRQChr01g0006241 Helianthus annuus HOM05D005227 ORTHO05D006379 6.8e-37 157.1 99 77.8
Lsat_1_v5_gn_5_150700 Lactuca sativa HOM05D005227 ORTHO05D006379 6.8e-37 157.1 100 77.0
QL07p000144 Quercus lobata HOM05D005227 ORTHO05D006379 6.8e-37 157.1 98 75.5
Atru.chr9.939 Acer truncatum HOM05D005227 ORTHO05D006379 1.2e-36 156.4 99 75.8
Gohir.A11G165700 Gossypium hirsutum HOM05D005227 ORTHO05D006379 1.2e-36 156.4 98 77.6
Peaxi162Scf00254g00421 Petunia axillaris HOM05D005227 ORTHO05D006379 1.2e-36 156.4 97 77.3
Peaxi162Scf00890g00011 Petunia axillaris HOM05D005227 ORTHO05D006379 1.2e-36 156.4 97 77.3
Thhalv10001080m.g Eutrema salsugineum HOM05D005227 ORTHO05D006379 1.5e-36 156.0 99 75.8
Lalb_Chr17g0339811 Lupinus albus HOM05D005227 ORTHO05D006379 1.5e-36 156.0 98 77.6
PGSC0003DMG400031097 Solanum tuberosum HOM05D005227 ORTHO05D006379 1.5e-36 156.0 98 77.6
Ciclev10017275m.g Citrus clementina HOM05D005227 ORTHO05D006379 2.0e-36 155.6 98 76.5
PGR142G0063 Punica granatum HOM05D005227 ORTHO05D006379 2.0e-36 155.6 98 77.6
THA.LOC104806226 Tarenaya hassleriana HOM05D005227 ORTHO05D006379 2.0e-36 155.6 99 74.7
HPP92_006340 Vanilla planifolia HOM05D005227 ORTHO05D006379 2.0e-36 155.6 100 77.0
Sed0010668 Sechium edule HOM05D005227 ORTHO05D006379 3.4e-36 154.8 99 76.8
arahy.Tifrunner.gnm1.ann1.59GI1K Arachis hypogaea HOM05D005227 ORTHO05D006379 4.4e-36 154.5 98 77.6
arahy.Tifrunner.gnm1.ann1.GL2DWM Arachis hypogaea HOM05D005227 ORTHO05D006379 4.4e-36 154.5 98 77.6
Phvul.010G097600 Phaseolus vulgaris HOM05D005227 ORTHO05D006379 4.4e-36 154.5 100 76.0
Sopen07g029430 Solanum pennellii HOM05D005227 ORTHO05D006379 5.8e-36 154.1 98 76.5
Nitab4.5_0000743g0160 Nicotiana tabacum HOM05D005227 ORTHO05D006379 7.6e-36 153.7 98 76.5
Solyc07g055030.1 Solanum lycopersicum HOM05D005227 ORTHO05D006379 7.6e-36 153.7 98 75.5
AL8G14830 Arabidopsis lyrata HOM05D005227 ORTHO05D006379 9.9e-36 153.3 99 73.7
CiPaw.09G138800 Carya illinoinensis HOM05D005227 ORTHO05D006379 9.9e-36 153.3 97 74.2
HanXRQChr01g0006251 Helianthus annuus HOM05D005227 ORTHO05D006379 9.9e-36 153.3 95 77.9
Carub.0001s3436 Capsella rubella HOM05D005227 ORTHO05D006379 1.3e-35 152.9 99 73.7
Glyma.03G013100 Glycine max HOM05D005227 ORTHO05D006379 1.3e-35 152.9 99 75.8
unitig_8.g3748 Utricularia gibba HOM05D005227 ORTHO05D006379 1.3e-35 152.9 98 76.5
AT5G44710 Arabidopsis thaliana HOM05D005227 ORTHO05D006379 1.7e-35 152.5 99 73.7
BcaC06g31592 Brassica carinata HOM05D005227 ORTHO05D006379 1.7e-35 152.5 99 74.7
BcaC06g31593 Brassica carinata HOM05D005227 ORTHO05D006379 1.7e-35 152.5 99 74.7
Manes.03G071400 Manihot esculenta HOM05D005227 ORTHO05D006379 1.7e-35 152.5 97 75.3
PSO832G3358 Papaver somniferum HOM05D005227 ORTHO05D006379 1.7e-35 152.5 99 78.8
Prupe.1G101300 Prunus persica HOM05D005227 ORTHO05D006379 1.7e-35 152.5 97 75.3
Aqoxy1G01370 Aquilegia oxysepala HOM05D005227 ORTHO05D006379 2.2e-35 152.1 98 75.5
Sopen07g027180 Solanum pennellii HOM05D005227 ORTHO05D006379 2.2e-35 152.1 98 74.5
PGSC0003DMG401020444 Solanum tuberosum HOM05D005227 ORTHO05D006379 2.2e-35 152.1 98 74.5
Zm00001eb354280 Zea mays HOM05D005227 ORTHO05D006379 2.2e-35 152.1 98 76.5
MD05G1245000 Malus domestica HOM05D005227 ORTHO05D006379 2.9e-35 151.8 94 77.7
Solyc07g056070.2 Solanum lycopersicum HOM05D005227 ORTHO05D006379 2.9e-35 151.8 98 74.5
A02p28550 Brassica napus HOM05D005227 ORTHO05D006379 3.8e-35 151.4 99 74.7
BolC2t10561H Brassica oleracea HOM05D005227 ORTHO05D006379 3.8e-35 151.4 99 74.7
BraA02t07892Z Brassica rapa HOM05D005227 ORTHO05D006379 3.8e-35 151.4 99 74.7
Carub.0008s0355 Capsella rubella HOM05D005227 ORTHO05D006379 3.8e-35 151.4 99 73.7
Cfa001143 Carpinus fangiana HOM05D005227 ORTHO05D006379 4.9e-35 151.0 97 74.2
PSO198G0154 Papaver somniferum HOM05D005227 ORTHO05D006379 4.9e-35 151.0 99 77.8
BcaC06g34520 Brassica carinata HOM05D005227 ORTHO05D006379 6.4e-35 150.6 99 73.7
C07p27610 Brassica napus HOM05D005227 ORTHO05D006379 6.4e-35 150.6 99 73.7
BcaB07g30501 Brassica carinata HOM05D005227 ORTHO05D006379 8.4e-35 150.2 99 73.7
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 8.4e-35 150.2 98 73.5
CDE05G2352 Ceratophyllum demersum HOM05D005227 ORTHO05D006379 8.4e-35 150.2 97 77.3
PSO541G1361 Papaver somniferum HOM05D005227 ORTHO05D006379 8.4e-35 150.2 99 77.8
Sp2g09520 Schrenkiella parvula HOM05D005227 ORTHO05D006379 8.4e-35 150.2 99 73.7
arahy.Tifrunner.gnm1.ann1.BUN8CC Arachis hypogaea HOM05D005227 ORTHO05D006379 1.1e-34 149.8 98 75.5
BcaC03g16691 Brassica carinata HOM05D005227 ORTHO05D006379 1.1e-34 149.8 99 73.7
CARHR178190 Cardamine hirsuta HOM05D005227 ORTHO05D006379 1.1e-34 149.8 98 72.4
Oeu041343.1 Olea europaea HOM05D005227 ORTHO05D006379 1.1e-34 149.8 98 75.5
Haze_05241 Corylus avellana HOM05D005227 ORTHO05D006379 1.4e-34 149.4 97 74.2
EL10Ac4g09705 Beta vulgaris HOM05D005227 ORTHO05D006379 1.9e-34 149.1 95 75.8
MD10G1226300 Malus domestica HOM05D005227 ORTHO05D006379 1.9e-34 149.1 94 76.6
A09p21240 Brassica napus HOM05D005227 ORTHO05D006379 2.4e-34 148.7 99 72.7
BraA09t37729Z Brassica rapa HOM05D005227 ORTHO05D006379 2.4e-34 148.7 99 72.7
BcaB07g30937 Brassica carinata HOM05D005227 ORTHO05D006379 4.2e-34 147.9 99 72.7
ECA248G3549 Erigeron canadensis HOM05D005227 ORTHO05D006379 5.4e-34 147.5 99 73.7
SalBow2G2250 Salvia bowleyana HOM05D005227 ORTHO05D006379 5.4e-34 147.5 98 73.5
PSO541G0222 Papaver somniferum HOM05D005227 ORTHO05D006379 7.1e-34 147.1 99 75.8
PSO675G1867 Papaver somniferum HOM05D005227 ORTHO05D006379 7.1e-34 147.1 99 75.8
AUR62042297 Chenopodium quinoa HOM05D005227 ORTHO05D006379 9.2e-34 146.7 99 71.7
BraA06t27572Z Brassica rapa HOM05D005227 ORTHO05D006379 1.2e-33 146.4 99 73.7
Os05g0148300 Oryza sativa ssp. japonica HOM05D005227 ORTHO05D006379 1.2e-33 146.4 98 73.5
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 1.2e-33 146.4 97 74.2
Glyma.03G084100 Glycine max HOM05D005227 ORTHO05D006379 1.6e-33 146.0 100 71.0
Potri.003G155000 Populus trichocarpa HOM05D005227 ORTHO05D006379 1.6e-33 146.0 97 74.2
Nitab4.5_0001904g0080 Nicotiana tabacum HOM05D005227 ORTHO05D006379 2.1e-33 145.6 98 74.5
Lj3g0019179 Lotus japonicus HOM05D005227 ORTHO05D006379 2.7e-33 145.2 98 72.4
CANSAT21G1070 Cannabis sativa HOM05D005227 ORTHO05D006379 4.6e-33 144.4 95 72.6
Ciclev10010372m.g Citrus clementina HOM05D005227 ORTHO05D006379 4.6e-33 144.4 98 72.4
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 6.0e-33 144.1 95 72.6
Cfa001148 Carpinus fangiana HOM05D005227 ORTHO05D006379 6.0e-33 144.1 97 71.1
Sc15g0005680 Simmondsia chinensis HOM05D005227 ORTHO05D006379 1.0e-32 143.3 95 71.6
FAN21G2110 Fragaria x ananassa HOM05D005227 ORTHO05D006379 1.7e-32 142.5 97 71.1
TPR.G1285 Trifolium pratense HOM05D005227 ORTHO05D006379 3.0e-32 141.7 98 70.4
TPR.G4382 Trifolium pratense HOM05D005227 ORTHO05D006379 3.0e-32 141.7 100 69.0
FvH4_3g13100 Fragaria vesca HOM05D005227 ORTHO05D006379 5.1e-32 141.0 97 70.1
FAN11G3694 Fragaria x ananassa HOM05D005227 ORTHO05D006379 5.1e-32 141.0 97 70.1
FAN16G1292 Fragaria x ananassa HOM05D005227 ORTHO05D006379 5.1e-32 141.0 97 70.1
Rhsim13G0134700 Rhododendron simsii HOM05D005227 ORTHO05D006379 6.6e-32 140.6 94 72.3
RhsimUnG0177600 Rhododendron simsii HOM05D005227 ORTHO05D006379 6.6e-32 140.6 94 72.3
RcHm_v2.0_Chr3g0492041 Rosa chinensis HOM05D005227 ORTHO05D006379 2.5e-31 138.7 97 68.0
RcHm_v2.0_Chr5g0021361 Rosa chinensis HOM05D005227 ORTHO05D006379 2.5e-31 138.7 97 68.0
Medtr8g031320 Medicago truncatula HOM05D005227 ORTHO05D006379 6.2e-30 134.0 98 66.3
CSS0027348 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 4.2e-26 121.3 105 62.9
CSS0030749 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 4.2e-26 121.3 105 62.9
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 2.7e-25 118.6 72 73.6
Dinv26329 Davidia involucrata HOM05D005227 ORTHO05D006379 1.7e-24 115.9 69 73.9
Ah.06g187780 Amaranthus hybridus HOM05D005227 ORTHO05D006379 6.6e-24 114.0 156 44.2
CDE02G3990 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 3.6e-22 108.2 70 72.9
VMungo0859G0001 Vigna mungo HOM05D005227 ORTHO05D006379 1.2e-20 103.2 70 67.1
arahy.Tifrunner.gnm1.ann1.RE1YA1 Arachis hypogaea HOM05D005227 ORTHO05D006379 4.5e-20 101.3 68 69.1
FAN25G2025 Fragaria x ananassa HOM05D005227 ORTHO05D006379 7.6e-20 100.5 85 60.0
AagrBONN_evm.TU.Sc2ySwM_228.4328 Anthoceros agrestis HOM05D005227 ORTHO05D006379 1.3e-19 99.8 88 58.0
Pp3c15_4210 Physcomitrium patens HOM05D005227 ORTHO05D006379 1.3e-19 99.8 89 57.3
Ca_23647_v3 Cicer arietinum L. HOM05D005227 ORTHO05D006379 2.2e-19 99.0 68 66.2
AUR62040506 Chenopodium quinoa HOM05D005227 ORTHO05D006379 6.4e-19 97.4 66 65.2
C02p45310 Brassica napus HOM05D005227 ORTHO05D006379 1.1e-18 96.7 62 75.8
Psat4g202600 Pisum sativum HOM05D005227 ORTHO05D006379 1.2e-17 93.2 68 61.8
Psat0s277g0080 Pisum sativum HOM05D005227 ORTHO05D006379 1.6e-17 92.8 68 61.8
BcaC04g21823 Brassica carinata HOM05D005227 ORTHO05D006379 2.7e-17 92.0 99 54.5
AUR62035552 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.3e-16 89.7 59 67.8
Ciclev10006880m.g Citrus clementina HOM05D005227 ORTHO05D006379 1.3e-14 83.2 98 52.0
Lsat_1_v5_gn_4_103780 Lactuca sativa HOM05D005227 ORTHO05D006379 6.2e-14 80.9 61 63.9
Mapoly0090s0044 Marchantia polymorpha HOM05D005227 ORTHO05D006379 1.5e-12 76.3 83 47.0
HPP92_027864 Vanilla planifolia HOM05D005227 ORTHO05D006379 1.3e-11 73.2 44 70.5
C09p27040 Brassica napus HOM05D005227 ORTHO05D006379 1.1e-10 70.1 75 52.0
MCO07G459 Micromonas commoda HOM05D005227 ORTHO05D006379 2.3e-08 62.4 85 45.9
Cfa022274 Carpinus fangiana HOM05D005227 ORTHO05D006379 6.7e-08 60.8 101 36.6


User provided reference genes

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