Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0752G131 Amborella trichopoda HOM05D005393 ORTHO05D006257 4.1e-237 824.3 411 100.0
Rhsim06G0018100 Rhododendron simsii HOM05D005393 ORTHO05D006257 5.1e-86 322.4 412 45.9
MBI05_g23374_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 1.2e-84 317.8 408 46.3
CSS0039974 Camellia sinensis var. sinensis HOM05D005393 ORTHO05D006257 8.1e-84 315.1 402 45.3
vmacro07566 Vaccinium macrocarpon HOM05D005393 ORTHO05D006257 8.1e-84 315.1 410 45.4
Lj4A800T35 Lonicera japonica HOM05D005393 ORTHO05D006257 2.3e-83 313.5 409 44.5
GSVIVG01009966001 Vitis vinifera HOM05D005393 ORTHO05D006257 4.9e-81 305.8 413 44.6
Actinidia15447 Actinidia chinensis HOM05D005393 ORTHO05D006257 1.1e-80 304.7 410 44.6
Oeu051167.1 Olea europaea HOM05D005393 ORTHO05D006257 1.4e-80 304.3 403 42.9
CiPaw.07G145800 Carya illinoinensis HOM05D005393 ORTHO05D006257 2.1e-79 300.4 408 43.4
TAR625G0839 Trochodendron aralioides HOM05D005393 ORTHO05D006257 1.0e-78 298.1 403 45.4
Aqoxy3G02145 Aquilegia oxysepala HOM05D005393 ORTHO05D006257 9.6e-77 291.6 413 43.6
Cfa006180 Carpinus fangiana HOM05D005393 ORTHO05D006257 8.1e-76 288.5 420 41.9
SalBow7G1577 Salvia bowleyana HOM05D005393 ORTHO05D006257 1.8e-75 287.3 408 40.9
QL02p012400 Quercus lobata HOM05D005393 ORTHO05D006257 2.4e-75 287.0 406 43.3
Haze_04666 Corylus avellana HOM05D005393 ORTHO05D006257 4.0e-75 286.2 413 40.9
Nitab4.5_0001663g0130 Nicotiana tabacum HOM05D005393 ORTHO05D006257 8.9e-75 285.0 402 42.5
Nitab4.5_0000147g0020 Nicotiana tabacum HOM05D005393 ORTHO05D006257 1.5e-74 284.3 402 41.3
TWI36G1703 Tripterygium wilfordii HOM05D005393 ORTHO05D006257 7.6e-74 282.0 418 42.6
MD08G1009600 Malus domestica HOM05D005393 ORTHO05D006257 2.2e-73 280.4 426 40.4
PGR031G3016 Punica granatum HOM05D005393 ORTHO05D006257 2.9e-73 280.0 408 40.2
Migut.C00880 Erythranthe guttata HOM05D005393 ORTHO05D006257 3.8e-73 279.6 409 39.1
MSTRG.1171 Avicennia marina HOM05D005393 ORTHO05D006257 1.4e-72 277.7 412 40.8
Manes.18G010800 Manihot esculenta HOM05D005393 ORTHO05D006257 1.4e-72 277.7 405 42.0
DCAR_013885 Daucus carota HOM05D005393 ORTHO05D006257 1.9e-72 277.3 404 41.1
AUR62013927 Chenopodium quinoa HOM05D005393 ORTHO05D006257 3.2e-72 276.6 407 39.6
Sopen04g007470 Solanum pennellii HOM05D005393 ORTHO05D006257 4.2e-72 276.2 414 40.8
Solyc04g015400.3 Solanum lycopersicum HOM05D005393 ORTHO05D006257 9.3e-72 275.0 408 40.2
Cc10_g01360 Coffea canephora HOM05D005393 ORTHO05D006257 1.6e-71 274.2 406 40.4
unitig_46.g18035 Utricularia gibba HOM05D005393 ORTHO05D006257 1.6e-71 274.2 406 39.4
FAN11G2844 Fragaria x ananassa HOM05D005393 ORTHO05D006257 3.5e-71 273.1 414 40.6
EL10Ac1g02146 Beta vulgaris HOM05D005393 ORTHO05D006257 4.6e-71 272.7 410 40.5
Dinv39544 Davidia involucrata HOM05D005393 ORTHO05D006257 7.8e-71 271.9 386 41.2
Solyc04g015430.4 Solanum lycopersicum HOM05D005393 ORTHO05D006257 7.8e-71 271.9 416 39.9
Potri.005G242900 Populus trichocarpa HOM05D005393 ORTHO05D006257 2.3e-70 270.4 414 40.3
Sopen04g007480 Solanum pennellii HOM05D005393 ORTHO05D006257 2.3e-70 270.4 416 39.9
FvH4_3g40530 Fragaria vesca HOM05D005393 ORTHO05D006257 3.0e-70 270.0 414 40.3
Thecc.09G106500 Theobroma cacao HOM05D005393 ORTHO05D006257 5.1e-70 269.2 410 41.7
Hund05166 Selenicereus undatus HOM05D005393 ORTHO05D006257 6.6e-70 268.9 410 39.5
AUR62018264 Chenopodium quinoa HOM05D005393 ORTHO05D006257 1.5e-69 267.7 408 39.5
ClCG08G014060 Citrullus lanatus HOM05D005393 ORTHO05D006257 1.9e-69 267.3 404 41.1
FAN16G1012 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.9e-69 267.3 409 39.6
MELO3C011344.2 Cucumis melo HOM05D005393 ORTHO05D006257 3.3e-69 266.5 408 40.7
Eucgr.H00932 Eucalyptus grandis HOM05D005393 ORTHO05D006257 3.3e-69 266.5 414 39.4
Solyc04g015380.1 Solanum lycopersicum HOM05D005393 ORTHO05D006257 4.3e-69 266.2 404 40.3
Sed0019030 Sechium edule HOM05D005393 ORTHO05D006257 5.6e-69 265.8 407 40.0
Atru.chr13.247 Acer truncatum HOM05D005393 ORTHO05D006257 1.3e-68 264.6 393 42.2
Lalb_Chr08g0246221 Lupinus albus HOM05D005393 ORTHO05D006257 1.3e-68 264.6 417 39.1
CsaV3_2G024390 Cucumis sativus L. HOM05D005393 ORTHO05D006257 2.1e-68 263.8 408 40.0
Sopen04g007450 Solanum pennellii HOM05D005393 ORTHO05D006257 2.1e-68 263.8 404 40.6
THA.LOC104813224 Tarenaya hassleriana HOM05D005393 ORTHO05D006257 2.8e-68 263.5 412 39.3
Aa31LG1G3380 Aethionema arabicum HOM05D005393 ORTHO05D006257 3.6e-68 263.1 410 39.5
FvH4_2g38110 Fragaria vesca HOM05D005393 ORTHO05D006257 3.6e-68 263.1 414 40.8
COL.COLO4_34816 Corchorus olitorius HOM05D005393 ORTHO05D006257 8.1e-68 261.9 408 40.9
Ca_15477_v3 Cicer arietinum L. HOM05D005393 ORTHO05D006257 1.1e-67 261.5 409 38.4
Ciclev10001305m.g Citrus clementina HOM05D005393 ORTHO05D006257 1.1e-67 261.5 416 41.3
FAN21G0637 Fragaria x ananassa HOM05D005393 ORTHO05D006257 2.4e-67 260.4 415 39.5
RcHm_v2.0_Chr6g0303441 Rosa chinensis HOM05D005393 ORTHO05D006257 3.1e-67 260.0 421 40.9
Lj1g0025002 Lotus japonicus HOM05D005393 ORTHO05D006257 5.3e-67 259.2 409 38.6
Sc15g0004770 Simmondsia chinensis HOM05D005393 ORTHO05D006257 6.9e-67 258.8 414 38.4
FAN15G1059 Fragaria x ananassa HOM05D005393 ORTHO05D006257 9.0e-67 258.5 415 40.0
arahy.Tifrunner.gnm1.ann1.ZND7EK Arachis hypogaea HOM05D005393 ORTHO05D006257 1.2e-66 258.1 406 38.9
PSO170G5793 Papaver somniferum HOM05D005393 ORTHO05D006257 1.2e-66 258.1 431 39.9
Gorai.010G073400 Gossypium raimondii HOM05D005393 ORTHO05D006257 1.5e-66 257.7 412 40.8
CARHR011570 Cardamine hirsuta HOM05D005393 ORTHO05D006257 2.0e-66 257.3 402 37.8
Medtr3g114130 Medicago truncatula HOM05D005393 ORTHO05D006257 2.0e-66 257.3 403 39.2
Peaxi162Scf01286g00014 Petunia axillaris HOM05D005393 ORTHO05D006257 2.0e-66 257.3 384 38.8
Carub.0001s1094 Capsella rubella HOM05D005393 ORTHO05D006257 2.6e-66 256.9 416 38.5
PSO700G0289 Papaver somniferum HOM05D005393 ORTHO05D006257 2.6e-66 256.9 431 39.9
arahy.Tifrunner.gnm1.ann1.XU63JK Arachis hypogaea HOM05D005393 ORTHO05D006257 3.4e-66 256.5 406 38.4
Sp1g09970 Schrenkiella parvula HOM05D005393 ORTHO05D006257 9.9e-66 255.0 419 37.5
Sopen04g007460 Solanum pennellii HOM05D005393 ORTHO05D006257 1.3e-65 254.6 405 38.3
Duzib187G0945 Durio zibethinus HOM05D005393 ORTHO05D006257 2.2e-65 253.8 408 40.2
TPR.G17177 Trifolium pratense HOM05D005393 ORTHO05D006257 2.2e-65 253.8 404 38.6
Solyc04g015390.2 Solanum lycopersicum HOM05D005393 ORTHO05D006257 2.9e-65 253.4 405 38.0
Thhalv10007713m.g Eutrema salsugineum HOM05D005393 ORTHO05D006257 3.8e-65 253.1 407 37.8
Glyma.04G022700 Glycine max HOM05D005393 ORTHO05D006257 4.9e-65 252.7 407 38.3
Psat0s1401g0120 Pisum sativum HOM05D005393 ORTHO05D006257 6.4e-65 252.3 408 38.5
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 1.4e-64 251.1 400 38.2
Gohir.A06G064400 Gossypium hirsutum HOM05D005393 ORTHO05D006257 3.2e-64 250.0 412 40.0
AT1G11320 Arabidopsis thaliana HOM05D005393 ORTHO05D006257 1.6e-63 247.7 403 37.5
Gohir.D05G026300 Gossypium hirsutum HOM05D005393 ORTHO05D006257 2.1e-63 247.3 410 41.0
Gohir.A05G024800 Gossypium hirsutum HOM05D005393 ORTHO05D006257 2.7e-63 246.9 410 41.0
Gorai.009G026400 Gossypium raimondii HOM05D005393 ORTHO05D006257 2.7e-63 246.9 410 41.0
Ah.00g000790 Amaranthus hybridus HOM05D005393 ORTHO05D006257 1.0e-62 245.0 401 37.7
BolC5t29697H Brassica oleracea HOM05D005393 ORTHO05D006257 1.7e-62 244.2 411 37.2
RcHm_v2.0_Chr5g0073211 Rosa chinensis HOM05D005393 ORTHO05D006257 5.1e-62 242.7 414 37.9
AL1G22400 Arabidopsis lyrata HOM05D005393 ORTHO05D006257 6.6e-62 242.3 409 36.9
BcaC05g24995 Brassica carinata HOM05D005393 ORTHO05D006257 6.6e-62 242.3 411 37.2
A06p07940 Brassica napus HOM05D005393 ORTHO05D006257 4.3e-61 239.6 413 37.3
HanXRQChr13g0386891 Helianthus annuus HOM05D005393 ORTHO05D006257 4.3e-61 239.6 404 37.1
VMungo1309G1297 Vigna mungo HOM05D005393 ORTHO05D006257 9.6e-61 238.4 408 37.5
HPP92_022185 Vanilla planifolia HOM05D005393 ORTHO05D006257 1.3e-60 238.0 410 36.6
HPP92_022193 Vanilla planifolia HOM05D005393 ORTHO05D006257 1.3e-60 238.0 410 36.6
BraA06t23994Z Brassica rapa HOM05D005393 ORTHO05D006257 2.8e-60 236.9 413 36.6
TPR.G38234 Trifolium pratense HOM05D005393 ORTHO05D006257 2.8e-60 236.9 403 37.7
Dinv31876 Davidia involucrata HOM05D005393 ORTHO05D006257 8.1e-60 235.3 375 38.9
FAN25G1265 Fragaria x ananassa HOM05D005393 ORTHO05D006257 8.1e-60 235.3 412 38.1
BcaC05g24992 Brassica carinata HOM05D005393 ORTHO05D006257 3.1e-59 233.4 407 36.4
BraA08t35267Z Brassica rapa HOM05D000013 ORTHO05D000011 3.1e-59 233.4 404 36.9
SEGI_40641 Sequoiadendron giganteum HOM05D005393 ORTHO05D006257 2.0e-58 230.7 427 33.7
arahy.Tifrunner.gnm1.ann1.00YXRD Arachis hypogaea HOM05D005393 ORTHO05D006257 5.8e-58 229.2 385 36.1
A08p33510 Brassica napus HOM05D000013 ORTHO05D000011 1.1e-56 224.9 391 37.3
CDE05G3077 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 1.9e-56 224.2 388 35.6
FAN27G3400 Fragaria x ananassa HOM05D005393 ORTHO05D006257 1.9e-56 224.2 392 38.8
Phvul.009G018400 Phaseolus vulgaris HOM05D005393 ORTHO05D006257 7.1e-56 222.2 410 35.1
CDE05G0353 Ceratophyllum demersum HOM05D005393 ORTHO05D006257 4.6e-55 219.5 366 37.7
BcaC05g25006 Brassica carinata HOM05D005393 ORTHO05D006257 3.9e-54 216.5 402 35.3
Prupe.1G361500 Prunus persica HOM05D005393 ORTHO05D006257 8.7e-54 215.3 344 39.8
Lsat_1_v5_gn_8_29721 Lactuca sativa HOM05D005393 ORTHO05D006257 7.4e-53 212.2 411 34.1
ECA233G5167 Erigeron canadensis HOM05D005393 ORTHO05D006257 1.2e-50 204.9 387 36.2
C05p09550 Brassica napus HOM05D005393 ORTHO05D006257 3.8e-49 199.9 331 37.8
MBI05_g40808_MAGBIO Magnolia biondii HOM05D005393 ORTHO05D006257 3.5e-47 193.4 179 58.1
Os06g0724200 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 7.9e-47 192.2 404 32.4
BolC8t49083H Brassica oleracea HOM05D005393 ORTHO05D006257 9.6e-45 185.3 301 41.2
Zm00001eb272190 Zea mays HOM05D005393 ORTHO05D006257 2.1e-44 184.1 405 33.1
Pp3c4_19410 Physcomitrium patens HOM05D005393 ORTHO05D006257 2.8e-44 183.7 487 29.6
Mapoly0004s0136 Marchantia polymorpha HOM05D005393 ORTHO05D006257 4.8e-44 183.0 436 30.5
AagrBONN_evm.TU.Sc2ySwM_362.761 Anthoceros agrestis HOM05D005393 ORTHO05D006257 2.9e-41 173.7 436 32.1
SMO141G0148 Selaginella moellendorffii HOM05D046829 ORTHO05D006257 4.2e-40 169.9 433 32.1
AagrBONN_evm.TU.Sc2ySwM_362.762 Anthoceros agrestis HOM05D005393 ORTHO05D006257 7.4e-37 159.1 433 31.2
Nn6g31970 Nelumbo nucifera HOM05D005393 ORTHO05D006257 1.6e-36 157.9 181 51.9
Zm00001eb222750 Zea mays HOM05D005393 ORTHO05D006257 1.8e-35 154.5 422 28.9
Lsat_1_v5_gn_4_160601 Lactuca sativa HOM05D005393 ORTHO05D006257 1.4e-30 138.3 236 36.9
Pp3c3_18780 Physcomitrium patens HOM05D005393 ORTHO05D006257 1.4e-30 138.3 204 38.2
Os10g0438300 Oryza sativa ssp. japonica HOM05D005393 ORTHO05D006257 5.7e-29 132.9 417 25.7
CBR_g46669 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-28 131.3 463 26.1
C08p14400 Brassica napus HOM05D005393 ORTHO05D006257 3.7e-28 130.2 354 28.2
Pp3c26_6520 Physcomitrium patens HOM05D005393 ORTHO05D006257 8.2e-28 129.0 212 34.9
Nn6g31969 Nelumbo nucifera HOM05D005393 ORTHO05D006257 4.2e-24 116.7 225 34.7
Cpa.g.sc26.290 Carica papaya HOM05D005393 ORTHO05D006257 6.3e-20 102.8 187 33.2
PGSC0003DMG400027267 Solanum tuberosum HOM05D005393 ORTHO05D006257 2.6e-18 97.4 115 40.9
BcaB03g13262 Brassica carinata HOM05D005393 ORTHO05D006257 7.7e-18 95.9 356 24.4
FAN16G0769 Fragaria x ananassa HOM05D005393 ORTHO05D006257 5.9e-10 69.7 83 49.4
MD15G1008500 Malus domestica HOM05D005393 ORTHO05D006257 1.9e-08 64.7 62 41.9
TPR.G21884 Trifolium pratense HOM05D005393 ORTHO05D006257 4.7e-07 60.1 79 39.2
TPR.G684 Trifolium pratense HOM05D005393 ORTHO05D006257 6.1e-07 59.7 86 37.2


User provided reference genes

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