Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 6.2e-77 290.8 156 100.0
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 9.3e-41 170.6 136 69.9
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 1.6e-40 169.9 133 71.4
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 2.7e-40 169.1 133 69.2
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 4.6e-40 168.3 131 69.5
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 7.9e-40 167.5 156 62.8
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 7.9e-40 167.5 131 69.5
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 3.9e-39 165.2 135 68.9
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 3.9e-39 165.2 155 63.2
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 8.7e-39 164.1 130 69.2
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 1.1e-38 163.7 132 69.7
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 2.5e-38 162.5 135 67.4
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 5.7e-38 161.4 135 68.1
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 1.6e-37 159.8 133 67.7
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 1.6e-37 159.8 135 67.4
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 1.6e-37 159.8 136 68.4
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 1.6e-37 159.8 136 68.4
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 1.6e-37 159.8 133 69.9
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 2.8e-37 159.1 134 67.2
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 2.8e-37 159.1 135 67.4
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 3.7e-37 158.7 133 66.2
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 3.7e-37 158.7 134 68.7
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 4.8e-37 158.3 133 66.9
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 4.8e-37 158.3 133 66.9
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 8.2e-37 157.5 134 67.9
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 1.1e-36 157.1 135 67.4
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 1.4e-36 156.8 133 67.7
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 1.8e-36 156.4 133 68.4
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 1.8e-36 156.4 150 61.3
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 3.1e-36 155.6 155 60.0
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 3.1e-36 155.6 132 67.4
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 3.1e-36 155.6 134 64.9
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 3.1e-36 155.6 133 67.7
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 5.3e-36 154.8 134 67.2
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 5.3e-36 154.8 134 65.7
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 6.9e-36 154.5 135 65.2
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 6.9e-36 154.5 131 65.6
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 9.0e-36 154.1 130 66.9
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 9.0e-36 154.1 154 59.7
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 9.0e-36 154.1 135 65.9
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 9.0e-36 154.1 156 57.7
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 2.0e-35 152.9 135 65.2
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 2.0e-35 152.9 133 64.7
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 2.0e-35 152.9 134 64.9
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 2.6e-35 152.5 154 59.7
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 2.6e-35 152.5 133 66.2
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 2.6e-35 152.5 134 64.2
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 3.4e-35 152.1 157 59.2
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 4.5e-35 151.8 133 63.9
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 4.5e-35 151.8 133 66.2
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 5.9e-35 151.4 131 64.1
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 5.9e-35 151.4 135 64.4
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 7.7e-35 151.0 135 64.4
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 7.7e-35 151.0 134 64.2
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 7.7e-35 151.0 131 64.9
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 7.7e-35 151.0 151 58.3
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 1.3e-34 150.2 134 63.4
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 1.7e-34 149.8 132 64.4
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 1.7e-34 149.8 157 56.7
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 1.7e-34 149.8 136 62.5
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 2.9e-34 149.1 144 60.4
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 2.9e-34 149.1 156 57.7
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 2.9e-34 149.1 133 65.4
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 2.9e-34 149.1 134 63.4
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 3.8e-34 148.7 134 64.9
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 3.8e-34 148.7 134 64.9
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 5.0e-34 148.3 133 63.9
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 6.5e-34 147.9 133 63.2
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 6.5e-34 147.9 160 58.1
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 8.5e-34 147.5 156 59.0
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 8.5e-34 147.5 156 59.0
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 8.5e-34 147.5 134 64.2
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 8.5e-34 147.5 132 65.2
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 1.1e-33 147.1 157 56.7
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 1.4e-33 146.7 136 63.2
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 1.4e-33 146.7 133 64.7
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 1.9e-33 146.4 131 64.9
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 1.9e-33 146.4 134 61.9
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 3.2e-33 145.6 135 63.7
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 3.2e-33 145.6 135 61.5
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 4.2e-33 145.2 154 57.1
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 4.2e-33 145.2 154 57.1
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 5.5e-33 144.8 156 57.1
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 5.5e-33 144.8 146 61.0
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 7.2e-33 144.4 131 64.1
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 7.2e-33 144.4 131 63.4
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 1.2e-32 143.7 135 63.7
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 2.1e-32 142.9 135 62.2
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 3.6e-32 142.1 152 56.6
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 3.9e-31 138.7 158 58.2
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 5.1e-31 138.3 135 63.7
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 6.7e-31 137.9 137 59.9
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 6.7e-31 137.9 158 58.2
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 1.1e-30 137.1 135 59.3
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 4.3e-30 135.2 157 54.1
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 3.7e-29 132.1 115 65.2
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 3.7e-29 132.1 130 60.8
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 1.4e-28 130.2 136 55.9
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 2.4e-28 129.4 153 54.2
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 2.4e-28 129.4 153 54.2
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 5.3e-28 128.3 118 61.9
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 6.5e-26 121.3 135 54.8
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 9.4e-25 117.5 130 52.3
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 2.7e-24 115.9 131 55.7
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 3.6e-24 115.5 144 52.1
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 1.4e-23 113.6 98 65.3
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 6.7e-23 111.3 97 64.9
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 1.3e-21 107.1 130 49.2
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 1.3e-21 107.1 131 49.6
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 1.4e-20 103.6 98 61.2
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 9.1e-20 100.9 125 50.4
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 3.8e-18 95.5 147 45.6
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 6.7e-15 84.7 92 54.3
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 8.8e-15 84.3 99 54.5
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 9.7e-14 80.9 93 49.5
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 8.8e-07 57.8 45 71.1
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 2.0e-06 56.6 51 64.7


User provided reference genes

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