Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 7.2e-157 557.4 315 100.0
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 3.6e-68 262.7 291 64.6
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 5.3e-67 258.8 294 61.2
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 3.2e-64 249.6 306 59.5
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 5.4e-64 248.8 303 57.1
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 5.4e-64 248.8 302 60.9
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 5.4e-64 248.8 287 59.6
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 9.3e-64 248.1 301 54.5
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 2.7e-63 246.5 299 58.5
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 2.7e-63 246.5 301 54.2
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 2.7e-63 246.5 295 60.0
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 4.6e-63 245.7 285 60.0
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 7.9e-63 245.0 287 59.6
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 1.3e-62 244.2 301 53.8
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 2.3e-62 243.4 277 52.0
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 3.9e-62 242.7 314 56.7
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 5.1e-62 242.3 291 57.7
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 5.1e-62 242.3 279 63.1
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 8.7e-62 241.5 305 55.4
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 8.7e-62 241.5 289 57.8
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 1.1e-61 241.1 275 60.0
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 1.9e-61 240.4 289 56.7
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 2.5e-61 240.0 286 61.2
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 4.3e-61 239.2 289 58.1
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 5.6e-61 238.8 306 53.6
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.1e-60 236.9 298 57.0
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 4.8e-60 235.7 292 56.2
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 8.1e-60 235.0 288 57.6
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 1.4e-59 234.2 309 53.1
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.8e-59 233.8 296 56.4
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 2.4e-59 233.4 294 58.8
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.4e-59 233.4 298 58.1
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 3.1e-59 233.0 299 53.8
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 4.0e-59 232.6 298 57.7
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 5.3e-59 232.3 287 54.7
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 6.9e-59 231.9 296 55.4
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 1.2e-58 231.1 299 55.5
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 2.0e-58 230.3 303 54.8
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 2.6e-58 229.9 295 56.9
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 2.6e-58 229.9 296 58.1
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 3.4e-58 229.6 282 57.4
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 3.4e-58 229.6 282 57.4
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 4.5e-58 229.2 292 55.1
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 4.5e-58 229.2 281 56.6
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 7.6e-58 228.4 287 60.3
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 9.9e-58 228.0 270 56.7
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 1.3e-57 227.6 295 58.6
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 1.7e-57 227.3 304 60.2
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 2.9e-57 226.5 273 56.8
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 3.8e-57 226.1 293 60.1
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 4.9e-57 225.7 286 61.9
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 4.9e-57 225.7 273 61.5
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 6.4e-57 225.3 304 59.2
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 6.4e-57 225.3 299 59.5
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 8.4e-57 224.9 282 58.2
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.1e-56 224.6 299 50.5
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 1.4e-56 224.2 312 56.7
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 2.4e-56 223.4 300 57.7
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 3.2e-56 223.0 303 52.5
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 5.5e-56 222.2 295 57.6
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 7.1e-56 221.9 293 54.3
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 9.3e-56 221.5 287 58.5
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 9.3e-56 221.5 286 59.8
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.2e-55 221.1 291 53.6
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 1.2e-55 221.1 300 52.7
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 1.6e-55 220.7 289 60.2
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 2.1e-55 220.3 289 60.2
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.7e-55 219.9 304 58.2
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 2.7e-55 219.9 288 55.6
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 2.7e-55 219.9 296 52.7
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 2.7e-55 219.9 296 52.7
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 3.5e-55 219.5 293 57.0
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 6.0e-55 218.8 288 49.7
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 1.0e-54 218.0 263 61.2
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 1.3e-54 217.6 292 54.1
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 1.8e-54 217.2 311 50.8
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 5.1e-54 215.7 287 59.6
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 6.7e-54 215.3 286 57.3
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 8.7e-54 214.9 291 55.3
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 8.7e-54 214.9 280 58.6
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 8.7e-54 214.9 280 58.6
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 8.7e-54 214.9 282 58.2
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 1.5e-53 214.2 309 51.8
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 2.5e-53 213.4 302 59.3
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 4.3e-53 212.6 301 55.5
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 4.3e-53 212.6 282 58.5
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 4.3e-53 212.6 281 54.4
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 5.6e-53 212.2 295 53.6
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 1.3e-52 211.1 297 54.5
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 1.6e-52 210.7 298 51.0
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.6e-52 210.7 315 45.1
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 1.6e-52 210.7 318 54.4
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 2.8e-52 209.9 283 57.6
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 4.8e-52 209.1 318 54.1
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 6.2e-52 208.8 296 55.7
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 6.2e-52 208.8 300 57.7
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 6.2e-52 208.8 299 56.2
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 1.8e-51 207.2 289 59.9
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 2.4e-51 206.8 290 56.9
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 3.1e-51 206.5 292 55.1
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 3.1e-51 206.5 292 55.1
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 5.3e-51 205.7 286 58.7
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 5.3e-51 205.7 255 56.9
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 5.3e-51 205.7 303 52.8
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 9.0e-51 204.9 309 57.0
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 9.0e-51 204.9 294 55.4
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.2e-50 204.5 307 52.4
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 1.2e-50 204.5 271 59.0
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 1.5e-50 204.1 301 47.5
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 2.0e-50 203.8 299 53.2
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 2.6e-50 203.4 283 58.0
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 3.4e-50 203.0 286 55.6
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 1.0e-49 201.4 297 54.5
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 1.0e-49 201.4 284 53.2
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 1.3e-49 201.1 313 54.0
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 1.7e-49 200.7 282 59.6
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 3.8e-49 199.5 341 50.1
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 4.9e-49 199.1 313 51.1
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 6.5e-49 198.7 297 53.2
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 3.2e-48 196.4 292 55.8
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 3.2e-48 196.4 296 49.3
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 9.3e-48 194.9 279 55.9
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 7.9e-47 191.8 310 52.3
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 1.8e-46 190.7 297 53.5
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 1.8e-46 190.7 297 53.5
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 3.0e-46 189.9 303 49.2
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 5.1e-46 189.1 291 52.9
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 6.7e-46 188.7 278 58.3
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 1.1e-45 188.0 300 51.3
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 5.7e-45 185.7 294 53.4
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 9.7e-45 184.9 296 54.1
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 9.7e-45 184.9 280 55.4
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 1.3e-44 184.5 406 39.4
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 2.2e-44 183.7 223 55.2
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 4.1e-43 179.5 286 50.7
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 1.0e-41 174.9 297 53.2
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 2.2e-41 173.7 274 51.5
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 5.0e-41 172.6 265 51.7
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 1.0e-38 164.9 283 46.6
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.1e-35 154.8 214 58.4
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 2.4e-35 153.7 266 45.5
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 2.0e-34 150.6 218 57.3
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 2.6e-34 150.2 326 42.6
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 5.9e-34 149.1 205 58.0
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 5.9e-34 149.1 226 58.0
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.7e-33 147.5 211 59.7
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 5.0e-33 146.0 223 52.9
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 5.5e-32 142.5 210 61.0
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 2.1e-31 140.6 128 58.6
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 2.1e-31 140.6 299 40.8
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 1.4e-30 137.9 303 40.3
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 4.4e-29 132.9 272 46.3
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 5.3e-27 125.9 97 69.1
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 1.5e-26 124.4 320 44.1
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 2.2e-25 120.6 300 45.0
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 1.9e-24 117.5 77 77.9
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 2.5e-24 117.1 193 48.7
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 8.0e-23 112.1 268 48.1
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 5.7e-21 105.9 99 56.6
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 2.8e-20 103.6 69 66.7
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 1.8e-19 100.9 73 64.4
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 2.4e-19 100.5 138 57.2
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.7e-17 94.4 275 41.5
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.5e-16 91.3 99 53.5
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 5.5e-16 89.4 82 52.4
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 9.4e-16 88.6 198 51.5
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 1.6e-15 87.8 83 54.2
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 6.1e-15 85.9 105 50.5
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 1.4e-14 84.7 62 61.3
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 1.8e-14 84.3 82 53.7
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 3.0e-14 83.6 109 49.5
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 1.2e-13 81.6 62 59.7
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.7e-12 77.8 63 57.1
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 6.3e-12 75.9 60 58.3
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 1.4e-11 74.7 294 39.5
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 2.7e-10 70.5 69 56.5
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 7.7e-10 68.9 130 43.8
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 3.8e-09 66.6 264 44.3
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.8e-09 66.6 43 72.1
SEGI_24544 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.5e-08 64.7 145 40.0
SEGI_25865 Sequoiadendron giganteum HOM05D000010 ORTHO05D004484 3.6e-07 60.1 82 48.8
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 8.0e-07 58.9 82 42.7


User provided reference genes

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