Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0752G075 Amborella trichopoda HOM05D008051 ORTHO05D009905 7.8e-47 190.7 140 100.0
MBI18_g27147_MAGBIO Magnolia biondii HOM05D008051 ORTHO05D009905 3.3e-21 105.5 121 72.7
CSS0002609 Camellia sinensis var. sinensis HOM05D008051 ORTHO05D009905 5.6e-21 104.8 117 71.8
Dinv40787 Davidia involucrata HOM05D002089 ORTHO05D002848 1.4e-19 100.1 127 67.7
Oeu021430.1 Olea europaea HOM05D008051 ORTHO05D009905 3.4e-18 95.5 115 70.4
QL08p007021 Quercus lobata HOM05D008051 ORTHO05D009905 5.8e-18 94.7 123 69.9
EL10Ac4g07747 Beta vulgaris HOM05D008051 ORTHO05D009905 1.0e-17 94.0 117 68.4
Haze_21340 Corylus avellana HOM05D008051 ORTHO05D009905 4.9e-17 91.7 127 67.7
Haze_21342 Corylus avellana HOM05D008051 ORTHO05D009905 6.5e-17 91.3 123 67.5
DCAR_009646 Daucus carota HOM05D008051 ORTHO05D009905 8.4e-17 90.9 113 69.9
CAN.G407.107 Capsicum annuum HOM05D008051 ORTHO05D009905 4.2e-16 88.6 122 67.2
Ah.04g166050 Amaranthus hybridus HOM05D000120 ORTHO05D002159 7.1e-16 87.8 114 67.5
CANSAT11G0109 Cannabis sativa HOM05D008051 ORTHO05D009905 7.1e-16 87.8 65 58.5
Ciclev10010548m.g Citrus clementina HOM05D008051 ORTHO05D009905 7.1e-16 87.8 69 56.5
Haze_09724 Corylus avellana HOM05D008051 ORTHO05D009905 1.2e-15 87.0 121 67.8
Solyc03g116450.1 Solanum lycopersicum HOM05D008051 ORTHO05D009905 1.2e-15 87.0 119 66.4
Duzib213G0687 Durio zibethinus HOM05D008051 ORTHO05D009905 2.7e-15 85.9 121 66.9
SGA_v2.0_scaffold196G40891 Striga asiatica HOM05D008051 ORTHO05D009905 2.7e-15 85.9 118 66.9
PGSC0003DMG401000629 Solanum tuberosum HOM05D008051 ORTHO05D009905 3.5e-15 85.5 117 67.5
Cfa020295 Carpinus fangiana HOM05D008051 ORTHO05D009905 6.0e-15 84.7 123 65.0
Migut.N00262 Erythranthe guttata HOM05D008051 ORTHO05D009905 6.0e-15 84.7 109 72.5
Eucgr.F00712 Eucalyptus grandis HOM05D008051 ORTHO05D009905 6.0e-15 84.7 121 66.1
TWI39G0594 Tripterygium wilfordii HOM05D008051 ORTHO05D009905 1.0e-14 84.0 118 66.9
Gohir.D01G070000 Gossypium hirsutum HOM05D008051 ORTHO05D009905 1.3e-14 83.6 121 66.1
Gorai.002G092500 Gossypium raimondii HOM05D008051 ORTHO05D009905 1.3e-14 83.6 121 66.1
MD11G1211300 Malus domestica HOM05D008051 ORTHO05D009905 1.3e-14 83.6 72 54.2
Rhsim06G0068300 Rhododendron simsii HOM05D008051 ORTHO05D009905 2.3e-14 82.8 66 57.6
Cfa012978 Carpinus fangiana HOM05D008051 ORTHO05D009905 3.0e-14 82.4 123 63.4
CiPaw.11G193500 Carya illinoinensis HOM05D008051 ORTHO05D009905 5.1e-14 81.6 126 60.3
SGA_v2.0_scaffold196G40892 Striga asiatica HOM05D008051 ORTHO05D009905 5.1e-14 81.6 108 69.4
MSTRG.4127 Avicennia marina HOM05D008051 ORTHO05D009905 8.7e-14 80.9 117 63.2
Gohir.A01G083500 Gossypium hirsutum HOM05D008051 ORTHO05D009905 8.7e-14 80.9 115 67.8
Sabra11G0071300 Salix brachista HOM05D008051 ORTHO05D009905 1.5e-13 80.1 69 52.2
vmacro21377 Vaccinium macrocarpon HOM05D008051 ORTHO05D009905 1.9e-13 79.7 69 53.6
Cpa.g.sc12.286 Carica papaya HOM05D008051 ORTHO05D009905 2.5e-13 79.3 73 52.1
VMungo0540G2374 Vigna mungo HOM05D008051 ORTHO05D009905 3.3e-13 79.0 65 52.3
COL.COLO4_09713 Corchorus olitorius HOM05D008051 ORTHO05D009905 4.3e-13 78.6 67 56.7
Potri.001G355700 Populus trichocarpa HOM05D008051 ORTHO05D009905 7.4e-13 77.8 116 65.5
Prupe.4G221300 Prunus persica HOM05D008051 ORTHO05D009905 7.4e-13 77.8 69 49.3
Thecc.07G029800 Theobroma cacao HOM05D008051 ORTHO05D009905 7.4e-13 77.8 69 49.3
Glyma.18G093000 Glycine max HOM05D008051 ORTHO05D009905 9.6e-13 77.4 65 49.2
Phvul.006G046600 Phaseolus vulgaris HOM05D008051 ORTHO05D009905 3.7e-12 75.5 65 49.2
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 4.8e-12 75.1 69 49.3
Lsat_1_v5_gn_5_3180 Lactuca sativa HOM05D008051 ORTHO05D009905 1.4e-11 73.6 64 48.4
THA.LOC104798770 Tarenaya hassleriana HOM05D012777 ORTHO05D009905 1.4e-11 73.6 71 46.5
RcHm_v2.0_Chr5g0041151 Rosa chinensis HOM05D008051 ORTHO05D009905 5.3e-11 71.6 124 62.1
Manes.15G067600 Manihot esculenta HOM05D008051 ORTHO05D009905 3.4e-10 68.9 64 45.3
TPR.G33768 Trifolium pratense HOM05D008051 ORTHO05D009905 3.4e-10 68.9 69 44.9
HanXRQChr08g0233561 Helianthus annuus HOM05D008051 ORTHO05D009905 5.0e-09 65.1 116 61.2
PGR083G0962 Punica granatum HOM05D008051 ORTHO05D009905 5.0e-09 65.1 70 47.1
arahy.Tifrunner.gnm1.ann1.QA2XZ5 Arachis hypogaea HOM05D008051 ORTHO05D009905 3.2e-08 62.4 56 46.4
Medtr7g074340 Medicago truncatula HOM05D008051 ORTHO05D009905 5.5e-08 61.6 49 53.1
Medtr7g074350 Medicago truncatula HOM05D008051 ORTHO05D009905 5.5e-08 61.6 49 53.1
Medtr7g074360 Medicago truncatula HOM05D008051 ORTHO05D009905 5.5e-08 61.6 49 53.1
Lalb_Chr15g0081481 Lupinus albus HOM05D008051 ORTHO05D009905 7.2e-08 61.2 64 45.3
Psat2g012240 Pisum sativum HOM05D008051 ORTHO05D009905 7.2e-08 61.2 51 49.0
Medtr8g442670 Medicago truncatula HOM05D008051 ORTHO05D009905 3.6e-07 58.9 60 45.0
Cpa.g.sc12.259 Carica papaya HOM05D008051 ORTHO05D009905 1.3e-06 57.0 65 44.6
CsaV3_7G021190 Cucumis sativus L. HOM05D027124 ORTHO05D029025 1.3e-06 57.0 76 42.1
Medtr5g063040 Medicago truncatula HOM05D008051 ORTHO05D009905 1.3e-06 57.0 67 43.3
Sabra11G0072200 Salix brachista HOM05D008051 ORTHO05D009905 1.8e-06 56.6 58 46.6
Lalb_Chr04g0248291 Lupinus albus HOM05D008051 ORTHO05D009905 3.0e-06 55.8 51 49.0
Nn7g36860 Nelumbo nucifera HOM05D008051 ORTHO05D009905 3.0e-06 55.8 61 44.3
Medtr7g025060 Medicago truncatula HOM05D008051 ORTHO05D009905 5.1e-06 55.1 48 47.9
LjContig00272g0004425 Lotus japonicus HOM05D008051 ORTHO05D009905 6.7e-06 54.7 52 48.1
Nn1g07229 Nelumbo nucifera HOM05D002014 ORTHO05D001958 6.7e-06 54.7 67 37.3
Glyma.02G292700 Glycine max HOM05D008051 ORTHO05D009905 8.7e-06 54.3 51 51.0


User provided reference genes

Program Settings