Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 0.0e+00 1327.8 641 100.0
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 2.8e-264 915.2 644 67.9
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 2.0e-259 899.0 643 66.3
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 2.0e-259 899.0 643 66.3
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 1.0e-258 896.7 645 66.5
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 4.0e-255 884.8 644 65.1
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 4.0e-255 884.8 644 65.7
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 3.4e-254 881.7 644 64.8
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 9.8e-254 880.2 644 65.4
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 1.3e-253 879.8 645 65.6
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 1.7e-253 879.4 644 65.2
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 4.1e-252 874.8 644 65.1
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 7.0e-252 874.0 644 65.4
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 3.5e-251 871.7 647 64.8
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 3.5e-251 871.7 647 64.6
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 5.9e-251 870.9 648 64.4
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 1.0e-250 870.2 645 64.8
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 1.0e-250 870.2 647 64.6
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 5.0e-250 867.8 647 64.6
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 1.1e-249 866.7 645 65.0
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 1.9e-249 865.9 644 64.1
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 4.3e-249 864.8 622 66.4
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 5.6e-249 864.4 644 63.8
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 2.8e-248 862.1 645 63.9
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 4.7e-248 861.3 644 63.8
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 1.8e-247 859.4 646 64.1
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 2.0e-246 855.9 644 63.0
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 2.0e-246 855.9 644 63.4
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 5.8e-246 854.4 647 62.9
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 1.4e-244 849.7 649 63.2
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 5.4e-244 847.8 645 63.3
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 6.6e-242 840.9 645 62.6
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 1.1e-241 840.1 644 62.6
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 2.5e-241 839.0 644 62.6
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 7.3e-241 837.4 648 63.0
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 1.2e-238 830.1 644 62.0
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 3.7e-237 825.1 644 63.5
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 4.6e-235 818.1 647 61.7
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 1.6e-232 809.7 646 61.1
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 5.8e-230 801.2 602 63.3
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 1.1e-228 797.0 644 61.5
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 1.4e-228 796.6 618 62.3
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 8.7e-226 787.3 647 58.4
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 6.2e-224 781.2 635 59.4
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 4.3e-217 758.4 644 57.5
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 1.1e-215 753.8 648 55.7
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 4.0e-215 751.9 646 56.3
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 5.3e-215 751.5 654 55.5
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 9.0e-215 750.7 648 55.9
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 3.4e-214 748.8 648 56.9
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 2.3e-210 736.1 648 54.8
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 2.3e-210 736.1 648 54.8
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 8.1e-208 727.6 649 54.5
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 2.5e-201 706.1 556 60.6
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 6.9e-199 698.0 648 52.5
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 2.2e-197 693.0 640 53.9
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 7.4e-193 677.9 546 60.1
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 1.9e-185 653.3 649 50.5
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 1.5e-182 643.7 649 47.9
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 6.5e-173 611.7 654 47.1
GSVIVG01002953001 Vitis vinifera HOM05D007895 ORTHO05D010017 5.0e-149 532.3 395 65.6
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 6.0e-134 482.3 744 37.4
CiPaw.09G090200 Carya illinoinensis HOM05D007895 ORTHO05D010017 2.3e-109 400.6 310 63.5
MSTRG.7225 Avicennia marina HOM05D007895 ORTHO05D010017 4.2e-103 379.8 263 68.8
Cpa.g.sc189.18 Carica papaya HOM05D007895 ORTHO05D010017 2.0e-97 360.9 243 68.7
Cc00_g03030 Coffea canephora HOM05D007895 ORTHO05D010017 1.2e-94 351.7 243 69.1
Thhalv10026963m.g Eutrema salsugineum HOM05D007895 ORTHO05D010017 1.0e-88 332.0 257 61.1
CANSAT56G1122 Cannabis sativa HOM05D007895 ORTHO05D010017 4.9e-88 329.7 283 58.3
AT4G21890 Arabidopsis thaliana HOM05D007895 ORTHO05D010017 1.6e-86 324.7 258 60.5
CARHR228650 Cardamine hirsuta HOM05D007895 ORTHO05D010017 6.0e-86 322.8 254 60.6
Lalb_Chr15g0087521 Lupinus albus HOM05D007895 ORTHO05D010017 5.1e-85 319.7 224 67.4
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 4.0e-82 310.1 252 56.7
AUR62021973 Chenopodium quinoa HOM05D007895 ORTHO05D010017 1.5e-81 308.1 268 57.8
AUR62012684 Chenopodium quinoa HOM05D007895 ORTHO05D010017 5.8e-81 306.2 268 57.5
Sc05g0009090 Simmondsia chinensis HOM05D007895 ORTHO05D010017 1.1e-76 292.0 259 54.1
Aa31LG6G3880 Aethionema arabicum HOM05D007895 ORTHO05D010017 2.5e-76 290.8 253 56.1
SalBow8G0130 Salvia bowleyana HOM05D007895 ORTHO05D010017 2.2e-48 198.0 170 57.1
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 1.1e-47 195.7 258 43.0
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 7.5e-44 183.0 130 67.7
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 5.3e-42 176.8 377 32.4
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 7.0e-42 176.4 384 31.0
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 7.0e-42 176.4 366 30.6
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 1.6e-41 175.3 374 31.8
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 1.7e-40 171.8 386 29.8
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 2.2e-40 171.4 371 30.7
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 8.5e-40 169.5 383 29.5
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 1.1e-39 169.1 379 31.4
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 1.9e-39 168.3 375 28.8
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 1.9e-39 168.3 383 30.8
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 1.9e-39 168.3 374 32.4
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 3.2e-39 167.5 355 31.5
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 4.2e-39 167.2 377 28.9
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 5.5e-39 166.8 372 30.1
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 7.2e-39 166.4 379 29.3
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 1.2e-38 165.6 379 29.3
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 2.1e-38 164.9 381 29.4
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 2.1e-38 164.9 381 29.4
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 2.1e-38 164.9 362 31.8
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 4.7e-38 163.7 384 28.4
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 4.7e-38 163.7 379 30.3
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 1.0e-37 162.5 370 29.5
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 1.4e-37 162.2 379 29.8
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 1.4e-37 162.2 405 29.9
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 2.3e-37 161.4 380 28.7
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 5.2e-37 160.2 382 28.8
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 6.8e-37 159.8 379 31.1
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 6.8e-37 159.8 381 29.1
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 8.8e-37 159.5 372 29.0
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 1.2e-36 159.1 374 29.9
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 1.2e-36 159.1 376 30.3
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 1.5e-36 158.7 375 30.4
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 2.6e-36 157.9 379 28.5
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 2.6e-36 157.9 373 29.0
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 3.4e-36 157.5 390 28.7
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 3.4e-36 157.5 378 28.8
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 3.4e-36 157.5 378 28.8
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 3.4e-36 157.5 376 28.7
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 3.4e-36 157.5 357 29.1
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 3.4e-36 157.5 373 30.8
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 3.4e-36 157.5 380 28.7
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 4.4e-36 157.1 385 28.6
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 5.7e-36 156.8 373 29.2
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 7.5e-36 156.4 379 28.0
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 7.5e-36 156.4 379 28.2
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 9.8e-36 156.0 377 28.1
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.3e-35 155.6 375 30.1
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 1.7e-35 155.2 385 28.1
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 1.7e-35 155.2 373 29.0
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 2.2e-35 154.8 391 29.7
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 6.3e-35 153.3 378 28.0
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.1e-34 152.5 378 27.5
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 1.1e-34 152.5 374 29.1
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 1.4e-34 152.1 374 30.2
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 1.4e-34 152.1 368 28.8
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 2.4e-34 151.4 380 29.5
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 3.1e-34 151.0 368 29.1
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 5.4e-34 150.2 395 29.1
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 2.7e-33 147.9 378 28.3
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 5.9e-33 146.7 398 28.1
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 7.7e-33 146.4 384 29.4
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 1.0e-32 146.0 379 29.0
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 1.3e-32 145.6 383 28.7
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 1.3e-32 145.6 357 30.0
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 2.3e-32 144.8 374 30.5
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 2.9e-32 144.4 375 28.8
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 5.0e-32 143.7 367 29.4
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 8.6e-32 142.9 378 27.5
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 8.6e-32 142.9 387 28.4
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 1.5e-31 142.1 369 28.2
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 1.5e-31 142.1 346 31.8
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 1.9e-31 141.7 376 29.8
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 2.5e-31 141.4 393 27.7
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 9.5e-31 139.4 369 29.5
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 9.5e-31 139.4 359 29.5
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 2.1e-30 138.3 379 28.2
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 2.8e-30 137.9 319 29.8
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 2.8e-30 137.9 336 30.4
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 1.0e-29 136.0 316 30.1
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 5.2e-29 133.7 416 26.4
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 6.8e-29 133.3 307 29.6
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 2.0e-28 131.7 369 26.6
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 2.0e-28 131.7 335 29.0
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 2.0e-28 131.7 305 30.2
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 3.4e-28 131.0 374 27.8
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 2.8e-27 127.9 334 28.7
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 3.7e-27 127.5 318 29.9
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 6.3e-27 126.7 379 26.9
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 3.2e-26 124.4 355 27.9
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 4.6e-25 120.6 240 28.8
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 2.3e-24 118.2 233 34.8
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 3.9e-24 117.5 308 28.2
HPP92_001781 Vanilla planifolia HOM05D007895 ORTHO05D010017 3.3e-23 114.4 118 49.2
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 5.6e-23 113.6 313 27.8
Rhsim13G0155300 Rhododendron simsii HOM05D007895 ORTHO05D013379 7.3e-23 113.2 171 42.7
CAN.G328.16 Capsicum annuum HOM05D007895 ORTHO05D010017 1.6e-22 112.1 152 41.4
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 4.0e-21 107.5 227 33.5
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 1.4e-18 99.0 231 30.7
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 7.0e-18 96.7 253 27.7
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 9.2e-18 96.3 441 25.4
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 1.2e-17 95.9 370 23.8
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 8.6e-16 89.7 373 23.9
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 7.3e-15 86.7 216 25.9
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 6.8e-13 80.1 177 33.3
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 5.1e-08 63.9 99 36.4
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 1.2e-06 59.3 317 23.7


User provided reference genes

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