Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 0.0e+00 2576.6 1549 100.0
ATR0712G030 Amborella trichopoda HOM05D004836 ORTHO05D005150 1.4e-258 897.5 845 62.2
ATR0712G152 Amborella trichopoda HOM05D004836 ORTHO05D005150 1.4e-109 402.5 303 71.9
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 7.8e-63 247.3 1739 27.0
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 2.6e-50 205.7 1731 26.2
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 2.6e-42 179.1 1650 27.2
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 5.6e-37 161.4 1385 24.1
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 1.8e-35 156.4 1371 24.1
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 1.2e-34 153.7 667 32.8
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 2.0e-34 152.9 671 39.5
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 2.2e-33 149.4 695 32.4
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.4e-32 146.7 1578 24.8
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 1.4e-32 146.7 623 32.3
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 5.4e-32 144.8 1450 24.5
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 9.3e-32 144.1 416 34.6
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 1.6e-31 143.3 363 35.8
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 8.7e-30 137.5 645 37.1
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 2.8e-28 132.5 455 33.4
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 4.8e-28 131.7 631 30.7
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 5.3e-27 128.3 416 33.7
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 5.3e-27 128.3 423 35.0
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 2.0e-26 126.3 403 35.2
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 7.6e-26 124.4 668 30.4
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 3.8e-25 122.1 685 29.2
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 4.9e-25 121.7 674 29.2
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 8.4e-25 120.9 1488 22.5
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 4.2e-24 118.6 816 28.3
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 2.1e-23 116.3 413 33.2
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 4.6e-23 115.2 640 29.1
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 6.0e-23 114.8 675 28.4
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 6.0e-23 114.8 641 30.0
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 1.0e-22 114.0 412 31.6
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 2.3e-22 112.8 449 35.6
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 6.7e-22 111.3 674 29.2
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 2.5e-21 109.4 411 29.2
ATR0712G078 Amborella trichopoda HOM05D004836 ORTHO05D005150 5.6e-21 108.2 220 75.0
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 7.4e-21 107.8 1648 24.4
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 1.3e-20 107.1 620 29.7
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 3.7e-20 105.5 414 32.6
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 3.7e-20 105.5 620 31.0
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 3.7e-20 105.5 639 31.9
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 1.8e-19 103.2 394 32.2
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 4.0e-19 102.1 625 28.2
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 5.3e-19 101.7 714 29.4
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 6.9e-19 101.3 800 27.8
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 9.0e-19 100.9 393 32.3
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 1.5e-18 100.1 1006 26.8
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.6e-18 99.4 814 27.9
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 2.6e-18 99.4 391 32.0
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 3.4e-18 99.0 1435 22.8
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 7.6e-18 97.8 377 32.9
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 1.3e-17 97.1 395 31.4
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 1.3e-17 97.1 394 31.5
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 1.7e-17 96.7 639 29.4
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 2.2e-17 96.3 382 31.9
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 4.9e-17 95.1 374 30.5
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 6.5e-17 94.7 468 29.1
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 1.1e-16 94.0 659 28.2
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.9e-16 93.2 636 30.2
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 2.5e-16 92.8 177 42.4
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 3.2e-16 92.4 650 31.4
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 5.5e-16 91.7 411 29.4
SEGI_04158 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 7.1e-16 91.3 276 35.1
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 2.7e-15 89.4 541 28.5
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 2.7e-15 89.4 632 28.3
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 4.6e-15 88.6 621 28.2
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 4.6e-15 88.6 293 28.3
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 4.6e-15 88.6 209 34.0
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 6.0e-15 88.2 412 30.6
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 6.0e-15 88.2 202 31.2
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 6.0e-15 88.2 208 36.1
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 7.9e-15 87.8 121 49.6
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 1.0e-14 87.4 191 38.2
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 3.9e-14 85.5 652 30.8
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 3.9e-14 85.5 650 27.8
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 5.1e-14 85.1 426 28.9
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 5.1e-14 85.1 247 37.2
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 6.7e-14 84.7 643 30.3
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.1e-13 84.0 586 25.4
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 1.1e-13 84.0 253 31.6
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 1.9e-13 83.2 302 32.5
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 1.9e-13 83.2 208 38.0
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 2.5e-13 82.8 542 26.0
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 2.5e-13 82.8 212 29.7
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 4.3e-13 82.0 499 32.1
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 9.7e-13 80.9 444 37.6
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 1.6e-12 80.1 249 28.5
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 1.6e-12 80.1 247 27.1
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 1.6e-12 80.1 584 30.5
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 2.2e-12 79.7 1772 24.3
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 2.2e-12 79.7 501 32.5
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 2.2e-12 79.7 418 28.2
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 3.7e-12 79.0 253 31.2
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 8.2e-12 77.8 643 24.4
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 1.1e-11 77.4 389 28.5
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 1.1e-11 77.4 672 26.3
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 1.4e-11 77.0 441 37.4
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 1.4e-11 77.0 583 31.9
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 1.8e-11 76.6 675 31.7
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 1.8e-11 76.6 179 36.9
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 2.4e-11 76.3 463 35.9
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 2.4e-11 76.3 645 30.9
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 3.1e-11 75.9 182 36.8
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 3.1e-11 75.9 179 36.3
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 3.1e-11 75.9 182 36.8
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 3.1e-11 75.9 261 33.3
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 4.1e-11 75.5 446 30.5
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 5.3e-11 75.1 196 33.2
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 5.3e-11 75.1 272 32.0
Zm00001eb316050 Zea mays HOM05D028105 ORTHO05D005150 5.3e-11 75.1 707 27.0
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 9.0e-11 74.3 305 31.5
HPP92_018201 Vanilla planifolia HOM05D004836 ORTHO05D005150 1.2e-10 73.9 412 30.8
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 1.5e-10 73.6 166 38.6
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 3.4e-10 72.4 115 47.0
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 7.6e-10 71.2 446 27.6
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 1.0e-09 70.9 453 29.1
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 1.3e-09 70.5 304 30.3
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 1.7e-09 70.1 645 28.5
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 2.2e-09 69.7 199 30.2
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 2.9e-09 69.3 228 31.1
Actinidia30399 Actinidia chinensis HOM05D004836 ORTHO05D005150 1.4e-08 67.0 116 36.2
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 1.4e-08 67.0 213 30.0
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 1.4e-08 67.0 79 54.4
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 2.5e-08 66.2 423 27.7
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 4.2e-08 65.5 59 67.8
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 7.2e-08 64.7 435 29.7
Pp3c1_42830 Physcomitrium patens HOM05D014698 ORTHO05D016532 1.2e-07 63.9 85 40.0
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 1.6e-07 63.5 271 29.5
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 2.7e-07 62.8 191 31.4
Mapoly0020s0135 Marchantia polymorpha HOM05D014698 ORTHO05D016532 2.7e-07 62.8 85 38.8
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 3.6e-07 62.4 291 28.9
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 4.6e-07 62.0 219 29.2
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 7.9e-07 61.2 429 26.8
CDE02G4444 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 1.8e-06 60.1 148 29.7
ATR0820G104 Amborella trichopoda HOM05D004836 ORTHO05D005150 3.0e-06 59.3 58 72.4
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 3.9e-06 58.9 67 43.3


User provided reference genes

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