Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0749G089 Amborella trichopoda HOM05D006017 ORTHO05D007821 1.8e-292 1008.4 472 100.0
MBI07_g06432_MAGBIO Magnolia biondii HOM05D006017 ORTHO05D007821 2.5e-246 855.1 454 86.6
CSS0036883 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 9.5e-238 826.6 441 83.7
Actinidia18784 Actinidia chinensis HOM05D006017 ORTHO05D007821 5.7e-235 817.4 451 81.4
MSTRG.14945 Avicennia marina HOM05D006017 ORTHO05D007821 4.9e-234 814.3 442 82.6
Atru.chr2.2344 Acer truncatum HOM05D006017 ORTHO05D007821 6.4e-234 813.9 446 82.1
Rhsim04G0023700 Rhododendron simsii HOM05D006017 ORTHO05D007821 1.4e-233 812.8 435 84.1
Dinv14956 Davidia involucrata HOM05D006017 ORTHO05D007821 5.4e-233 810.8 451 80.5
Sopen12g005880 Solanum pennellii HOM05D006017 ORTHO05D007821 5.4e-233 810.8 439 82.9
TWI38G0439 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 7.0e-233 810.4 468 77.6
GSVIVG01014248001 Vitis vinifera HOM05D006017 ORTHO05D007821 7.0e-233 810.4 451 82.0
Solyc12g014100.2 Solanum lycopersicum HOM05D006017 ORTHO05D007821 9.2e-233 810.1 439 82.7
PGSC0003DMG400015330 Solanum tuberosum HOM05D006017 ORTHO05D007821 2.0e-232 808.9 439 82.7
PGR083G0123 Punica granatum HOM05D006017 ORTHO05D007821 2.7e-232 808.5 428 83.9
PSO541G6385 Papaver somniferum HOM05D006017 ORTHO05D007821 3.5e-232 808.1 441 83.9
Cc05_g11510 Coffea canephora HOM05D006017 ORTHO05D007821 4.6e-232 807.7 452 79.9
Cfa019614 Carpinus fangiana HOM05D006017 ORTHO05D007821 1.0e-231 806.6 459 79.7
Lj8A152T86 Lonicera japonica HOM05D006017 ORTHO05D007821 2.3e-231 805.4 455 80.2
Migut.M00760 Erythranthe guttata HOM05D006017 ORTHO05D007821 5.0e-231 804.3 434 81.8
Cpa.g.sc131.80 Carica papaya HOM05D006017 ORTHO05D007821 1.5e-230 802.7 435 82.5
Hma1.2p1_0416F.1_g148570 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 3.3e-230 801.6 442 81.2
Peaxi162Scf00000g00262 Petunia axillaris HOM05D006017 ORTHO05D007821 4.3e-230 801.2 432 82.2
HanXRQChr03g0070991 Helianthus annuus HOM05D006017 ORTHO05D007821 5.6e-230 800.8 430 82.6
ECA240G4517 Erigeron canadensis HOM05D006017 ORTHO05D007821 7.3e-230 800.4 433 81.3
Prupe.4G172100 Prunus persica HOM05D006017 ORTHO05D007821 9.5e-230 800.0 441 80.5
CANSAT35G1773 Cannabis sativa HOM05D006017 ORTHO05D007821 1.2e-229 799.7 433 82.4
PSO675G4947 Papaver somniferum HOM05D006017 ORTHO05D007821 1.2e-229 799.7 454 80.6
vmacro09508 Vaccinium macrocarpon HOM05D006017 ORTHO05D007821 2.1e-229 798.9 477 76.7
CiPaw.12G115700 Carya illinoinensis HOM05D006017 ORTHO05D007821 3.6e-229 798.1 433 83.1
Aqoxy1G02214 Aquilegia oxysepala HOM05D006017 ORTHO05D007821 1.4e-228 796.2 435 82.1
Manes.03G103900 Manihot esculenta HOM05D006017 ORTHO05D007821 1.8e-228 795.8 429 81.4
Gorai.002G065000 Gossypium raimondii HOM05D006017 ORTHO05D007821 5.2e-228 794.3 430 82.6
Thecc.07G102400 Theobroma cacao HOM05D006017 ORTHO05D007821 5.2e-228 794.3 430 83.3
Gohir.A01G059400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 6.8e-228 793.9 430 82.8
Haze_09368 Corylus avellana HOM05D006017 ORTHO05D007821 1.2e-227 793.1 481 77.1
Sc03g0010290 Simmondsia chinensis HOM05D006017 ORTHO05D007821 1.2e-227 793.1 430 82.3
EL10Ac4g08290 Beta vulgaris HOM05D006017 ORTHO05D007821 1.5e-227 792.7 447 80.3
Gohir.D01G045400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 2.0e-227 792.3 430 82.3
CiPaw.11G165400 Carya illinoinensis HOM05D006017 ORTHO05D007821 2.2e-226 788.9 442 80.3
Lsat_1_v5_gn_9_98620 Lactuca sativa HOM05D006017 ORTHO05D007821 6.4e-226 787.3 429 81.1
RcHm_v2.0_Chr5g0031821 Rosa chinensis HOM05D006017 ORTHO05D007821 1.4e-225 786.2 440 80.2
FAN16G2700 Fragaria x ananassa HOM05D006017 ORTHO05D007821 2.4e-225 785.4 439 80.4
CAN.G739.4 Capsicum annuum HOM05D006017 ORTHO05D007821 3.2e-225 785.0 465 76.8
FAN11G3087 Fragaria x ananassa HOM05D006017 ORTHO05D007821 4.1e-225 784.6 440 80.5
Eucgr.F01184 Eucalyptus grandis HOM05D006017 ORTHO05D007821 7.0e-225 783.9 432 80.1
Eucgr.F01185 Eucalyptus grandis HOM05D006017 ORTHO05D007821 9.2e-225 783.5 434 80.0
DCAR_028453 Daucus carota HOM05D006017 ORTHO05D007821 1.7e-223 779.2 461 76.6
QL08p027671 Quercus lobata HOM05D006017 ORTHO05D007821 3.0e-223 778.5 431 81.0
Aa31LG3G9950 Aethionema arabicum HOM05D006017 ORTHO05D007821 1.1e-222 776.5 432 80.8
BcaB05g22107 Brassica carinata HOM05D006017 ORTHO05D007821 2.5e-222 775.4 434 80.6
AUR62019513 Chenopodium quinoa HOM05D006017 ORTHO05D007821 2.5e-222 775.4 443 78.3
Oeu061327.1 Olea europaea HOM05D006017 ORTHO05D007821 2.5e-222 775.4 481 73.4
Oeu061328.1 Olea europaea HOM05D006017 ORTHO05D007821 2.5e-222 775.4 481 73.4
A02p10590 Brassica napus HOM05D006017 ORTHO05D007821 5.6e-222 774.2 434 79.7
BraA02t06124Z Brassica rapa HOM05D006017 ORTHO05D007821 5.6e-222 774.2 434 79.7
C02p17670 Brassica napus HOM05D006017 ORTHO05D007821 7.3e-222 773.9 434 80.0
ClCG07G009900 Citrullus lanatus HOM05D006017 ORTHO05D007821 1.2e-221 773.1 442 78.7
AL8G29200 Arabidopsis lyrata HOM05D006017 ORTHO05D007821 1.6e-221 772.7 437 79.4
Sp6g16110 Schrenkiella parvula HOM05D006017 ORTHO05D007821 2.1e-221 772.3 432 80.3
THA.LOC104811882 Tarenaya hassleriana HOM05D006017 ORTHO05D007821 2.1e-221 772.3 432 79.6
Carub.0008s1436 Capsella rubella HOM05D006017 ORTHO05D007821 4.7e-221 771.2 437 78.7
Sed0020976 Sechium edule HOM05D006017 ORTHO05D007821 6.2e-221 770.8 442 78.3
BcaC03g14354 Brassica carinata HOM05D006017 ORTHO05D007821 3.1e-220 768.5 434 79.5
Lj3g0015312 Lotus japonicus HOM05D006017 ORTHO05D007821 4.0e-220 768.1 434 79.0
CsaV3_4G008430 Cucumis sativus L. HOM05D006017 ORTHO05D007821 5.2e-220 767.7 447 77.0
BolC2t07897H Brassica oleracea HOM05D006017 ORTHO05D007821 6.8e-220 767.3 434 79.3
AT5G54080 Arabidopsis thaliana HOM05D006017 ORTHO05D007821 1.2e-219 766.5 432 79.2
CARHR267270 Cardamine hirsuta HOM05D006017 ORTHO05D007821 3.4e-219 765.0 432 79.6
Lalb_Chr03g0030841 Lupinus albus HOM05D006017 ORTHO05D007821 3.4e-219 765.0 451 76.7
MELO3C016089.2 Cucumis melo HOM05D006017 ORTHO05D007821 4.4e-219 764.6 447 77.0
Phvul.011G148800 Phaseolus vulgaris HOM05D006017 ORTHO05D007821 4.4e-219 764.6 431 79.8
FAN21G1753 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.7e-218 762.7 468 75.0
arahy.Tifrunner.gnm1.ann1.DSNA77 Arachis hypogaea HOM05D006017 ORTHO05D007821 4.9e-218 761.1 439 76.5
arahy.Tifrunner.gnm1.ann1.FV2XB3 Arachis hypogaea HOM05D006017 ORTHO05D007821 1.1e-217 760.0 439 76.5
Glyma.12G158600 Glycine max HOM05D006017 ORTHO05D007821 1.1e-217 760.0 428 79.7
Medtr8g463280 Medicago truncatula HOM05D006017 ORTHO05D007821 1.4e-217 759.6 433 78.1
Os06g0103300 Oryza sativa ssp. japonica HOM05D006017 ORTHO05D007821 5.4e-217 757.7 440 78.0
AUR62036125 Chenopodium quinoa HOM05D006017 ORTHO05D007821 9.2e-217 756.9 446 76.0
Ca_23058_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 1.2e-216 756.5 434 78.1
Ca_30664_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 1.2e-216 756.5 434 78.1
Psat4g138640 Pisum sativum HOM05D006017 ORTHO05D007821 1.2e-216 756.5 428 79.2
Potri.001G374100 Populus trichocarpa HOM05D006017 ORTHO05D007821 7.8e-216 753.8 433 78.3
VMungo1127G0952 Vigna mungo HOM05D006017 ORTHO05D007821 7.8e-216 753.8 432 78.2
Sabra16G0246500 Salix brachista HOM05D006017 ORTHO05D007821 8.6e-215 750.4 432 78.0
HPP92_003902 Vanilla planifolia HOM05D006017 ORTHO05D007821 1.5e-214 749.6 451 74.7
Nitab4.5_0003077g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 4.3e-214 748.0 476 73.1
Zm00001eb379510 Zea mays HOM05D006017 ORTHO05D007821 2.6e-211 738.8 455 74.1
SGA_v2.0_scaffold73G24213 Striga asiatica HOM05D006017 ORTHO05D007821 1.7e-210 736.1 486 71.0
CDE02G3882 Ceratophyllum demersum HOM05D006017 ORTHO05D007821 3.2e-209 731.9 439 77.2
unitig_46.g18314 Utricularia gibba HOM05D006017 ORTHO05D007821 2.7e-208 728.8 440 73.4
Ciclev10008509m.g Citrus clementina HOM05D006017 ORTHO05D007821 7.3e-206 720.7 383 84.6
Ah.04g164440 Amaranthus hybridus HOM05D006017 ORTHO05D007821 9.6e-206 720.3 437 75.1
Nn1g04303 Nelumbo nucifera HOM05D006017 ORTHO05D007821 8.1e-205 717.2 383 84.9
Mapoly0078s0002 Marchantia polymorpha HOM05D006017 ORTHO05D007821 3.0e-199 698.7 449 71.3
Pp3c16_940 Physcomitrium patens HOM05D006017 ORTHO05D007821 2.4e-196 689.1 447 71.1
Hund22764 Selenicereus undatus HOM05D006017 ORTHO05D007821 3.8e-194 681.8 397 77.8
AagrBONN_evm.TU.Sc2ySwM_228.2578 Anthoceros agrestis HOM05D006017 ORTHO05D007821 1.8e-191 672.9 427 71.0
Thhalv10013691m.g Eutrema salsugineum HOM05D006017 ORTHO05D007821 1.6e-181 639.8 434 67.7
Duzib170G0488 Durio zibethinus HOM05D006017 ORTHO05D007821 1.5e-179 633.3 430 69.1
SMO119G0176 Selaginella moellendorffii HOM05D006017 ORTHO05D007821 5.5e-177 624.8 435 66.0
Nitab4.5_0005445g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 5.1e-175 618.2 406 70.7
FvH4_3g19020 Fragaria vesca HOM05D006017 ORTHO05D007821 1.4e-161 573.5 320 80.3
SalBow8G4076 Salvia bowleyana HOM05D006017 ORTHO05D007821 1.4e-161 573.5 310 81.0
Cre02.g091200 Chlamydomonas reinhardtii HOM05D006017 ORTHO05D007821 2.5e-161 572.8 465 60.0
Hma1.2p1_0416F.1_g148580 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 1.6e-160 570.1 303 83.2
PRCOL_00000185 Prasinoderma coloniale HOM05D006017 ORTHO05D007821 9.7e-158 560.8 458 60.5
TPR.G22540 Trifolium pratense HOM05D006017 ORTHO05D007821 1.2e-152 543.9 373 69.2
MD03G1237500 Malus domestica HOM05D006017 ORTHO05D007821 1.7e-149 533.5 281 83.6
Glyma.06G234200 Glycine max HOM05D006017 ORTHO05D007821 3.8e-130 469.2 274 77.4
CSS0003418 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 2.5e-81 307.0 189 75.7
SEGI_01915 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 4.6e-75 286.2 185 70.8
MD03G1237300 Malus domestica HOM05D006017 ORTHO05D007821 3.7e-72 276.6 168 73.8
FAN25G2436 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.1e-68 265.0 132 88.6
Glyma.06G234050 Glycine max HOM05D006017 ORTHO05D007821 1.6e-64 251.1 133 82.0
BcaC04g20394 Brassica carinata HOM05D006017 ORTHO05D007821 4.0e-63 246.5 363 42.1
Rhsim07G0153900 Rhododendron simsii HOM05D006017 ORTHO05D000252 2.0e-62 244.2 218 56.0
Oeu061326.1 Olea europaea HOM05D006017 ORTHO05D007821 7.1e-60 235.7 133 78.9
C09p44170 Brassica napus HOM05D006017 ORTHO05D017343 1.2e-59 235.0 216 57.9
TAR436G0001 Trochodendron aralioides HOM05D006017 ORTHO05D007821 1.1e-57 228.4 132 78.0
Nitab4.5_0004022g0010 Nicotiana tabacum HOM05D006017 ORTHO05D007821 1.5e-57 228.0 120 82.5
CSS0021316 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 4.8e-48 196.4 124 68.5
TWI38G1497 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 1.4e-47 194.9 119 74.8
A10p11370 Brassica napus HOM05D006017 ORTHO05D007821 1.1e-44 185.3 249 45.8
SEGI_25954 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 4.8e-32 143.3 96 65.6
SEGI_23248 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 1.1e-23 115.5 80 62.5
TWI38G0821 Tripterygium wilfordii HOM05D006017 ORTHO05D413584 9.1e-23 112.5 62 74.2
arahy.Tifrunner.gnm1.ann1.EZ2Q4B Arachis hypogaea HOM05D006004 ORTHO05D006976 6.5e-21 106.3 61 77.0
FAN25G2983 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.9e-20 104.8 89 55.1
BolC9t57289H Brassica oleracea HOM05D006017 ORTHO05D104628 6.1e-19 99.8 181 36.5
CSS0031230 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 1.0e-18 99.0 105 49.5
BraA10t43231Z Brassica rapa HOM05D006017 ORTHO05D017343 5.4e-15 86.7 68 58.8
Mapoly0432s0001 Marchantia polymorpha HOM05D019566 ORTHO05D017343 2.6e-09 67.8 43 69.8
HPP92_003866 Vanilla planifolia HOM05D006017 ORTHO05D007821 1.7e-08 65.1 65 55.4


User provided reference genes

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