Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0745G086 Amborella trichopoda HOM05D004498 ORTHO05D005300 2.7e-297 1024.6 533 100.0
TAR375G0984 Trochodendron aralioides HOM05D004498 ORTHO05D005300 9.5e-170 600.9 521 61.4
Hma1.2p1_0432F.1_g151900 Hydrangea macrophylla HOM05D004498 ORTHO05D005300 3.1e-168 595.9 523 61.2
Aqoxy3G03912 Aquilegia oxysepala HOM05D004498 ORTHO05D005300 8.9e-168 594.3 531 60.6
Cfa008145 Carpinus fangiana HOM05D004498 ORTHO05D005300 4.9e-166 588.6 520 60.6
Ciclev10004737m.g Citrus clementina HOM05D004498 ORTHO05D005300 2.4e-165 586.3 528 59.8
QL09p005249 Quercus lobata HOM05D004498 ORTHO05D005300 3.2e-165 585.9 533 60.0
Potri.001G126200 Populus trichocarpa HOM05D004498 ORTHO05D005300 3.0e-163 579.3 521 59.9
CiPaw.03G020300 Carya illinoinensis HOM05D004498 ORTHO05D005300 1.5e-162 577.0 520 59.8
PSO210G0611 Papaver somniferum HOM05D004498 ORTHO05D005300 4.3e-162 575.5 521 60.3
PSO210G1345 Papaver somniferum HOM05D004498 ORTHO05D005300 4.3e-162 575.5 521 60.1
Actinidia24991 Actinidia chinensis HOM05D004498 ORTHO05D005300 5.6e-162 575.1 501 61.5
Migut.D02110 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.6e-161 573.5 523 58.5
THA.LOC104819414 Tarenaya hassleriana HOM05D004498 ORTHO05D005300 1.1e-160 570.9 524 58.4
Migut.G01103 Erythranthe guttata HOM05D004498 ORTHO05D005300 1.8e-160 570.1 525 57.5
Sp6g35240 Schrenkiella parvula HOM05D004498 ORTHO05D005300 4.0e-160 568.9 530 58.1
Rhsim03G0165600 Rhododendron simsii HOM05D004498 ORTHO05D005300 9.0e-160 567.8 544 58.3
Manes.14G037200 Manihot esculenta HOM05D004498 ORTHO05D005300 2.0e-159 566.6 512 58.6
Atru.chr1.817 Acer truncatum HOM05D004498 ORTHO05D005300 2.6e-159 566.2 524 57.4
Sc15g0000230 Simmondsia chinensis HOM05D004498 ORTHO05D005300 2.6e-159 566.2 511 58.5
Thhalv10013248m.g Eutrema salsugineum HOM05D004498 ORTHO05D005300 5.8e-159 565.1 526 58.4
COL.COLO4_14097 Corchorus olitorius HOM05D004498 ORTHO05D005300 7.6e-159 564.7 510 59.0
AT5G07630 Arabidopsis thaliana HOM05D004498 ORTHO05D005300 1.7e-158 563.5 524 57.3
BcaC06g32495 Brassica carinata HOM05D004498 ORTHO05D005300 2.2e-158 563.1 520 59.0
Eucgr.G03077 Eucalyptus grandis HOM05D004498 ORTHO05D005300 2.9e-158 562.8 528 56.4
ECA233G4878 Erigeron canadensis HOM05D004498 ORTHO05D005300 3.8e-158 562.4 523 58.5
Sed0003630 Sechium edule HOM05D004498 ORTHO05D005300 3.8e-158 562.4 509 58.7
AL6G17950 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 4.9e-158 562.0 517 58.0
BcaC03g13193 Brassica carinata HOM05D004498 ORTHO05D005300 6.4e-158 561.6 526 58.2
CsaV3_4G004040 Cucumis sativus L. HOM05D004498 ORTHO05D005300 6.4e-158 561.6 509 58.3
Gohir.D12G200100 Gossypium hirsutum HOM05D004498 ORTHO05D005300 6.4e-158 561.6 529 57.3
Glyma.09G230400 Glycine max HOM05D004498 ORTHO05D005300 1.9e-157 560.1 522 57.5
Thecc.03G153100 Theobroma cacao HOM05D004498 ORTHO05D005300 2.4e-157 559.7 523 57.9
Lj3g0015680 Lotus japonicus HOM05D004498 ORTHO05D005300 4.2e-157 558.9 533 56.3
A10p29360 Brassica napus HOM05D004498 ORTHO05D005300 7.1e-157 558.1 514 58.4
Medtr4g036550 Medicago truncatula HOM05D004498 ORTHO05D005300 1.2e-156 557.4 523 57.2
BraA10t44979Z Brassica rapa HOM05D004498 ORTHO05D005300 1.6e-156 557.0 514 58.4
Phvul.011G007100 Phaseolus vulgaris HOM05D004498 ORTHO05D005300 1.6e-156 557.0 522 57.1
Gorai.008G215300 Gossypium raimondii HOM05D004498 ORTHO05D005300 2.7e-156 556.2 530 57.0
CAN.G937.4 Capsicum annuum HOM05D004498 ORTHO05D005300 4.6e-156 555.4 510 58.4
Cc02_g04430 Coffea canephora HOM05D004498 ORTHO05D005300 4.6e-156 555.4 510 58.2
BcaB05g21603 Brassica carinata HOM05D004498 ORTHO05D005300 7.8e-156 554.7 526 57.6
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 7.8e-156 554.7 524 57.6
Carub.0006s0661 Capsella rubella HOM05D004498 ORTHO05D005300 8.7e-155 551.2 510 57.8
Solyc05g051630.4 Solanum lycopersicum HOM05D004498 ORTHO05D005300 1.5e-154 550.4 510 57.8
Psat6g116600 Pisum sativum HOM05D004498 ORTHO05D005300 1.6e-153 547.0 523 56.2
TPR.G3665 Trifolium pratense HOM05D004498 ORTHO05D005300 1.1e-152 544.3 523 56.4
Ca_02786_v3 Cicer arietinum L. HOM05D004498 ORTHO05D005300 1.4e-152 543.9 523 56.0
Psat6g142360 Pisum sativum HOM05D004498 ORTHO05D005300 2.4e-152 543.1 523 56.2
Lalb_Chr04g0258171 Lupinus albus HOM05D004498 ORTHO05D005300 2.0e-151 540.0 526 55.3
Sabra01G0097300 Salix brachista HOM05D004498 ORTHO05D005300 1.3e-150 537.3 582 51.5
ClCG07G016840 Citrullus lanatus HOM05D004498 ORTHO05D005300 8.4e-150 534.6 486 58.2
HanXRQChr05g0142551 Helianthus annuus HOM05D004498 ORTHO05D005300 1.1e-149 534.3 496 58.3
BolC2t06286H Brassica oleracea HOM05D004498 ORTHO05D005300 1.8e-147 526.9 532 55.8
BraA02t04927Z Brassica rapa HOM05D004498 ORTHO05D005300 2.3e-147 526.6 521 56.0
Gohir.A12G197600 Gossypium hirsutum HOM05D004498 ORTHO05D005300 5.1e-147 525.4 475 58.9
Glyma.12G006200 Glycine max HOM05D004498 ORTHO05D005300 1.1e-146 524.2 476 58.4
MD11G1042200 Malus domestica HOM05D004498 ORTHO05D005300 1.1e-146 524.2 520 55.8
TWI23G0902 Tripterygium wilfordii HOM05D004498 ORTHO05D005300 5.6e-146 521.9 484 57.0
Prupe.6G033300 Prunus persica HOM05D004498 ORTHO05D005300 2.1e-145 520.0 520 54.6
PGR119G0143 Punica granatum HOM05D004498 ORTHO05D005300 1.2e-143 514.2 460 60.2
FvH4_3g41750 Fragaria vesca HOM05D004498 ORTHO05D005300 3.4e-143 512.7 514 53.9
Carub.0003s0947 Capsella rubella HOM05D004498 ORTHO05D005300 1.7e-142 510.4 523 54.9
RcHm_v2.0_Chr5g0074831 Rosa chinensis HOM05D004498 ORTHO05D005300 6.5e-142 508.4 514 53.3
Dinv16848 Davidia involucrata HOM05D004498 ORTHO05D005300 1.9e-141 506.9 510 55.1
GSVIVG01014038001 Vitis vinifera HOM05D004498 ORTHO05D005300 4.2e-141 505.8 523 53.9
CSS0042388 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 3.5e-140 502.7 455 58.9
Mapoly0124s0016 Marchantia polymorpha HOM05D004498 ORTHO05D005300 4.6e-140 502.3 534 51.3
FAN11G1420 Fragaria x ananassa HOM05D004498 ORTHO05D005300 7.9e-140 501.5 529 52.4
Nn1g09651 Nelumbo nucifera HOM05D004498 ORTHO05D005300 4.8e-137 492.3 434 61.5
Aa31LG3G18790 Aethionema arabicum HOM05D004498 ORTHO05D005300 3.1e-136 489.6 510 53.1
Nitab4.5_0001187g0110 Nicotiana tabacum HOM05D004498 ORTHO05D005300 5.0e-134 482.3 507 53.5
AL3G21620 Arabidopsis lyrata HOM05D004498 ORTHO05D005300 6.5e-134 481.9 480 56.0
Lj8A44G33 Lonicera japonica HOM05D004498 ORTHO05D005300 2.7e-132 476.5 445 59.1
Ah.15g094140 Amaranthus hybridus HOM05D004498 ORTHO05D005300 3.5e-132 476.1 550 48.7
arahy.Tifrunner.gnm1.ann1.LBI7WJ Arachis hypogaea HOM05D004498 ORTHO05D005300 3.5e-132 476.1 422 58.8
FAN16G2392 Fragaria x ananassa HOM05D004498 ORTHO05D005300 4.6e-132 475.7 513 51.5
Lsat_1_v5_gn_8_10281 Lactuca sativa HOM05D004498 ORTHO05D005300 7.9e-132 474.9 442 58.4
HPP92_003455 Vanilla planifolia HOM05D004498 ORTHO05D005300 1.8e-131 473.8 513 50.9
Manes.06G133200 Manihot esculenta HOM05D004498 ORTHO05D005300 1.1e-130 471.1 521 51.1
SalBow7G0508 Salvia bowleyana HOM05D004498 ORTHO05D005300 2.5e-130 469.9 434 58.1
Duzib084G1021 Durio zibethinus HOM05D004498 ORTHO05D005300 3.3e-130 469.5 523 51.2
Hund20838 Selenicereus undatus HOM05D004498 ORTHO05D005300 1.6e-129 467.2 507 50.9
AUR62009833 Chenopodium quinoa HOM05D004498 ORTHO05D005300 1.8e-128 463.8 431 55.7
MELO3C017661.2 Cucumis melo HOM05D004498 ORTHO05D005300 2.0e-127 460.3 405 60.2
DCAR_009449 Daucus carota HOM05D004498 ORTHO05D005300 3.4e-127 459.5 515 49.3
Sopen05g030080 Solanum pennellii HOM05D004498 ORTHO05D005300 1.1e-125 454.5 425 57.4
vmacro22807 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 1.9e-125 453.8 491 52.7
Migut.G01144 Erythranthe guttata HOM05D004498 ORTHO05D005300 7.9e-124 448.4 392 60.5
FAN25G1514 Fragaria x ananassa HOM05D004498 ORTHO05D005300 6.7e-123 445.3 552 47.1
arahy.Tifrunner.gnm1.ann1.V9VPQR Arachis hypogaea HOM05D004498 ORTHO05D005300 3.7e-121 439.5 461 52.9
Pp3c18_8280 Physcomitrium patens HOM05D004498 ORTHO05D005300 5.9e-119 432.2 478 47.5
Peaxi162Scf00167g00733 Petunia axillaris HOM05D004498 ORTHO05D005300 7.2e-117 425.2 425 55.5
FAN21G3639 Fragaria x ananassa HOM05D004498 ORTHO05D005300 3.6e-116 422.9 448 51.1
SMO200G0031 Selaginella moellendorffii HOM05D004498 ORTHO05D005300 1.8e-115 420.6 528 45.5
Zm00001eb105090 Zea mays HOM05D004498 ORTHO05D005300 3.0e-115 419.9 461 49.5
SHI13988 Sapria himalayana HOM05D004498 ORTHO05D005300 1.7e-113 414.1 499 47.7
BolC9t59715H Brassica oleracea HOM05D004498 ORTHO05D005300 2.2e-113 413.7 469 51.0
AagrBONN_evm.TU.Sc2ySwM_362.1167 Anthoceros agrestis HOM05D004498 ORTHO05D005300 4.8e-113 412.5 449 51.4
SGA_v2.0_scaffold115G32141 Striga asiatica HOM05D004498 ORTHO05D005300 6.3e-113 412.1 560 45.2
unitig_578.g16611 Utricularia gibba HOM05D004498 ORTHO05D005300 1.0e-110 404.8 447 48.8
EL10Ac7g16351 Beta vulgaris HOM05D004498 ORTHO05D005300 1.5e-109 401.0 572 42.7
C09p69720 Brassica napus HOM05D004498 ORTHO05D005300 1.9e-109 400.6 468 49.8
Dinv06575 Davidia involucrata HOM05D004498 ORTHO05D005300 3.3e-106 389.8 405 54.6
SGA_v2.0_scaffold92G28289 Striga asiatica HOM05D004498 ORTHO05D005300 1.3e-102 377.9 380 54.5
Nitab4.5_0002764g0030 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.6e-100 370.9 431 50.6
GSVIVG01037114001 Vitis vinifera HOM05D004498 ORTHO05D005300 4.5e-95 352.8 417 50.6
Migut.A00970 Erythranthe guttata HOM05D004498 ORTHO05D005300 5.2e-91 339.3 293 60.8
Oeu022469.1 Olea europaea HOM05D004498 ORTHO05D005300 4.4e-90 336.3 300 59.0
AagrBONN_evm.TU.Sc2ySwM_362.1160 Anthoceros agrestis HOM05D004498 ORTHO05D005300 1.2e-82 311.6 439 44.2
Rhsim07G0010200 Rhododendron simsii HOM05D004498 ORTHO05D005300 2.4e-80 303.9 330 52.7
CARHR205520 Cardamine hirsuta HOM05D004498 ORTHO05D005300 9.2e-80 302.0 257 60.7
arahy.Tifrunner.gnm1.ann1.XAT8RN Arachis hypogaea HOM05D004498 ORTHO05D005300 8.9e-67 258.8 235 56.6
Nitab4.5_0000818g0240 Nicotiana tabacum HOM05D004498 ORTHO05D005300 2.9e-65 253.8 333 47.4
Cre11.g467726 Chlamydomonas reinhardtii HOM05D004498 ORTHO05D005300 2.4e-64 250.8 659 30.3
Actinidia13585 Actinidia chinensis HOM05D004498 ORTHO05D005300 1.4e-59 235.0 216 56.5
AUR62038145 Chenopodium quinoa HOM05D004498 ORTHO05D005300 4.0e-59 233.4 389 40.6
SEGI_20056 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.2e-58 231.9 195 62.1
Migut.G01109 Erythranthe guttata HOM05D004498 ORTHO05D005300 7.6e-58 229.2 189 60.3
CDE02G4122 Ceratophyllum demersum HOM05D004498 ORTHO05D005300 1.9e-56 224.6 196 62.2
Nitab4.5_0003647g0080 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.9e-48 198.0 470 32.1
BcaC06g32419 Brassica carinata HOM05D004498 ORTHO05D005300 7.1e-48 196.1 173 60.7
MCO14G174 Micromonas commoda HOM05D004498 ORTHO05D005300 2.7e-47 194.1 438 34.9
Oeu042546.1 Olea europaea HOM05D004498 ORTHO05D005300 1.1e-43 182.2 224 50.4
SEGI_08016 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 7.1e-40 169.5 158 56.3
SEGI_20600 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 7.1e-40 169.5 158 56.3
SEGI_28281 Sequoiadendron giganteum HOM05D004498 ORTHO05D005300 1.2e-39 168.7 134 62.7
BcaNung06188 Brassica carinata HOM05D004498 ORTHO05D005300 7.9e-39 166.0 169 53.8
arahy.Tifrunner.gnm1.ann1.BI5KXL Arachis hypogaea HOM05D004498 ORTHO05D005300 2.4e-35 154.5 188 44.1
PRCOL_00001376 Prasinoderma coloniale HOM05D004498 ORTHO05D005300 6.7e-30 136.3 540 27.2
Sabra03G0074300 Salix brachista HOM05D004498 ORTHO05D005300 1.9e-29 134.8 159 49.7
Os07g0486100 Oryza sativa ssp. japonica HOM05D004498 ORTHO05D005300 5.6e-29 133.3 168 46.4
PGSC0003DMG401007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 1.4e-27 128.6 97 67.0
SGA_v2.0_scaffold4035G54420 Striga asiatica HOM05D004498 ORTHO05D005300 9.3e-24 115.9 144 44.4
CSS0024530 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 2.1e-20 104.8 86 60.5
Nitab4.5_0002764g0040 Nicotiana tabacum HOM05D004498 ORTHO05D005300 1.5e-18 98.6 100 52.0
Lj3g0020155 Lotus japonicus HOM05D004498 ORTHO05D005300 2.0e-18 98.2 104 52.9
Nn1g09635 Nelumbo nucifera HOM05D004498 ORTHO05D005300 3.4e-18 97.4 90 56.7
FvH4_1g27600 Fragaria vesca HOM05D004498 ORTHO05D005300 3.2e-16 90.9 108 50.0
Potri.003G107501 Populus trichocarpa HOM05D004498 ORTHO05D005300 1.5e-13 82.0 80 57.5
PGSC0003DMG402007235 Solanum tuberosum HOM05D004498 ORTHO05D005300 1.9e-13 81.6 90 46.7
vmacro22806 Vaccinium macrocarpon HOM05D004498 ORTHO05D005300 1.9e-13 81.6 80 47.5
SalBow7G0435 Salvia bowleyana HOM05D004498 ORTHO05D005300 2.5e-13 81.3 88 43.2
PGR142G0681 Punica granatum HOM05D004498 ORTHO05D005300 9.7e-13 79.3 80 52.5
SalBow8G0163 Salvia bowleyana HOM05D004498 ORTHO05D005300 1.4e-11 75.5 62 62.9
SalBow8G4260 Salvia bowleyana HOM05D004498 ORTHO05D005300 1.4e-11 75.5 62 62.9
Prupe.6G034800 Prunus persica HOM05D004498 ORTHO05D005300 3.1e-11 74.3 60 60.0
CSS0021614 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 2.0e-10 71.6 57 56.1
Cfa025118 Carpinus fangiana HOM05D004498 ORTHO05D005300 1.9e-08 65.1 188 30.9
Rhsim07G0010100 Rhododendron simsii HOM05D004498 ORTHO05D005300 9.4e-08 62.8 57 57.9
CSS0021260 Camellia sinensis var. sinensis HOM05D004498 ORTHO05D005300 1.0e-06 59.3 55 56.4
CARHR084780 Cardamine hirsuta HOM05D004498 ORTHO05D005300 6.7e-06 56.6 66 48.5


User provided reference genes

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