Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0745G069 Amborella trichopoda HOM05D007144 ORTHO05D008709 9.2e-35 150.6 143 100.0
SalBow5G2023 Salvia bowleyana HOM05D007144 ORTHO05D008709 3.5e-18 95.5 60 73.3
COL.COLO4_35678 Corchorus olitorius HOM05D007144 ORTHO05D008709 2.3e-17 92.8 61 73.8
SalBow5G2895 Salvia bowleyana HOM05D007144 ORTHO05D008709 3.9e-17 92.0 59 71.2
Sopen04g003740 Solanum pennellii HOM05D007144 ORTHO05D008709 1.5e-16 90.1 64 64.1
PGSC0003DMG400031376 Solanum tuberosum HOM05D007144 ORTHO05D008709 1.5e-16 90.1 64 64.1
CAN.G880.2 Capsicum annuum HOM05D007144 ORTHO05D008709 5.6e-16 88.2 62 64.5
Thhalv10014957m.g Eutrema salsugineum HOM05D007144 ORTHO05D008709 5.6e-16 88.2 61 67.2
Sp6g31320 Schrenkiella parvula HOM05D007144 ORTHO05D008709 7.3e-16 87.8 60 66.7
AL6G23120 Arabidopsis lyrata HOM05D007144 ORTHO05D008709 9.5e-16 87.4 55 74.5
THA.LOC104799122 Tarenaya hassleriana HOM05D007144 ORTHO05D008709 9.5e-16 87.4 69 59.4
Dinv36172 Davidia involucrata HOM05D007144 ORTHO05D008709 1.2e-15 87.0 75 60.0
CARHR200790 Cardamine hirsuta HOM05D007144 ORTHO05D008709 1.6e-15 86.7 60 68.3
Atru.chr3.2764 Acer truncatum HOM05D007144 ORTHO05D008709 2.1e-15 86.3 58 70.7
HPP92_013978 Vanilla planifolia HOM05D007144 ORTHO05D008709 2.1e-15 86.3 61 67.2
Gohir.D07G124200 Gossypium hirsutum HOM05D007144 ORTHO05D008709 3.6e-15 85.5 58 69.0
Gorai.001G134000 Gossypium raimondii HOM05D007144 ORTHO05D008709 3.6e-15 85.5 58 69.0
Solyc04g008580.3 Solanum lycopersicum HOM05D007144 ORTHO05D008709 3.6e-15 85.5 61 63.9
Thecc.09G249300 Theobroma cacao HOM05D007144 ORTHO05D008709 3.6e-15 85.5 58 72.4
A10p25500 Brassica napus HOM05D007144 ORTHO05D008709 4.7e-15 85.1 61 62.3
C09p64580 Brassica napus HOM05D007144 ORTHO05D008709 4.7e-15 85.1 61 62.3
BolC9t59291H Brassica oleracea HOM05D007144 ORTHO05D008709 4.7e-15 85.1 61 62.3
BraA10t44614Z Brassica rapa HOM05D007144 ORTHO05D008709 4.7e-15 85.1 61 62.3
Migut.O00557 Erythranthe guttata HOM05D007144 ORTHO05D008709 4.7e-15 85.1 57 66.7
Nitab4.5_0000129g0400 Nicotiana tabacum HOM05D007144 ORTHO05D008709 6.2e-15 84.7 62 64.5
TAR369G0480 Trochodendron aralioides HOM05D007144 ORTHO05D008709 6.2e-15 84.7 55 72.7
Cc11_g02820 Coffea canephora HOM05D007144 ORTHO05D008709 8.1e-15 84.3 66 59.1
Nitab4.5_0003882g0010 Nicotiana tabacum HOM05D007144 ORTHO05D008709 8.1e-15 84.3 61 63.9
Potri.009G070700 Populus trichocarpa HOM05D007144 ORTHO05D008709 8.1e-15 84.3 57 70.2
AT5G12320 Arabidopsis thaliana HOM05D007144 ORTHO05D008709 1.1e-14 84.0 55 70.9
Zm00001eb329760 Zea mays HOM05D007144 ORTHO05D008709 1.1e-14 84.0 62 64.5
Carub.0006s1083 Capsella rubella HOM05D007144 ORTHO05D008709 1.4e-14 83.6 61 63.9
Duzib168G0692 Durio zibethinus HOM05D007144 ORTHO05D008709 1.4e-14 83.6 66 63.6
Actinidia06960 Actinidia chinensis HOM05D007144 ORTHO05D008709 1.8e-14 83.2 55 70.9
EL10Ac4g10148 Beta vulgaris HOM05D007144 ORTHO05D008709 2.3e-14 82.8 60 65.0
unitig_749.g14354 Utricularia gibba HOM05D007144 ORTHO05D008709 3.1e-14 82.4 56 69.6
Lsat_1_v5_gn_2_34061 Lactuca sativa HOM05D007144 ORTHO05D008709 4.0e-14 82.0 58 65.5
Peaxi162Scf00329g00929 Petunia axillaris HOM05D007144 ORTHO05D008709 4.0e-14 82.0 61 62.3
Duzib150G1568 Durio zibethinus HOM05D007144 ORTHO05D008709 5.2e-14 81.6 54 72.2
RcHm_v2.0_Chr3g0485011 Rosa chinensis HOM05D007144 ORTHO05D008709 6.8e-14 81.3 58 63.8
SGA_v2.0_scaffold43G16444 Striga asiatica HOM05D007144 ORTHO05D008709 6.8e-14 81.3 56 66.1
FvH4_1g25870 Fragaria vesca HOM05D007144 ORTHO05D008709 8.9e-14 80.9 60 61.7
FAN23G1846 Fragaria x ananassa HOM05D007144 ORTHO05D008709 8.9e-14 80.9 60 61.7
Hund07439 Selenicereus undatus HOM05D007144 ORTHO05D008709 8.9e-14 80.9 61 63.9
Sc06g0004670 Simmondsia chinensis HOM05D007144 ORTHO05D008709 8.9e-14 80.9 58 65.5
Aqoxy1G00362 Aquilegia oxysepala HOM05D007144 ORTHO05D008709 1.2e-13 80.5 53 69.8
MBI13_g27793_MAGBIO Magnolia biondii HOM05D007144 ORTHO05D008709 1.2e-13 80.5 52 75.0
Prupe.4G267400 Prunus persica HOM05D007144 ORTHO05D008709 1.2e-13 80.5 56 66.1
Ah.06g194530 Amaranthus hybridus HOM05D007144 ORTHO05D008709 1.5e-13 80.1 60 65.0
arahy.Tifrunner.gnm1.ann1.A9WCXI Arachis hypogaea HOM05D007144 ORTHO05D008709 1.5e-13 80.1 56 66.1
CiPaw.13G151300 Carya illinoinensis HOM05D007144 ORTHO05D008709 1.5e-13 80.1 58 63.8
Ciclev10017489m.g Citrus clementina HOM05D007144 ORTHO05D008709 1.5e-13 80.1 55 69.1
FAN26G3363 Fragaria x ananassa HOM05D007144 ORTHO05D008709 1.5e-13 80.1 60 61.7
MD03G1167000 Malus domestica HOM05D007144 ORTHO05D008709 1.5e-13 80.1 63 61.9
Sabra09G0053500 Salix brachista HOM05D007144 ORTHO05D008709 1.5e-13 80.1 56 66.1
Hma1.2p1_0842F.1_g227150 Hydrangea macrophylla HOM05D007144 ORTHO05D008709 2.0e-13 79.7 53 71.7
DCAR_023846 Daucus carota HOM05D007144 ORTHO05D008709 2.6e-13 79.3 56 62.5
FAN19G1536 Fragaria x ananassa HOM05D007144 ORTHO05D008709 2.6e-13 79.3 60 60.0
HanXRQChr17g0535301 Helianthus annuus HOM05D007144 ORTHO05D008709 2.6e-13 79.3 59 62.7
CSS0000717 Camellia sinensis var. sinensis HOM05D007144 ORTHO05D008709 3.4e-13 79.0 53 69.8
Cpa.g.sc482.3 Carica papaya HOM05D007144 ORTHO05D008709 3.4e-13 79.0 53 71.7
CDE04G3392 Ceratophyllum demersum HOM05D000144 ORTHO05D007336 4.4e-13 78.6 61 62.3
Potri.001G276100 Populus trichocarpa HOM05D007144 ORTHO05D008709 4.4e-13 78.6 56 67.9
arahy.Tifrunner.gnm1.ann1.FNNB0Q Arachis hypogaea HOM05D007144 ORTHO05D008709 9.9e-13 77.4 51 68.6
arahy.Tifrunner.gnm1.ann1.J3HRR4 Arachis hypogaea HOM05D007144 ORTHO05D008709 9.9e-13 77.4 51 68.6
AUR62006537 Chenopodium quinoa HOM05D007144 ORTHO05D008709 2.9e-12 75.9 55 65.5
Sed0028076 Sechium edule HOM05D007144 ORTHO05D008709 2.9e-12 75.9 49 71.4
Aa31LG3G14910 Aethionema arabicum HOM05D007144 ORTHO05D008709 3.7e-12 75.5 48 77.1
MD11G1186200 Malus domestica HOM05D007144 ORTHO05D008709 3.7e-12 75.5 54 66.7
Atru.chr4.1901 Acer truncatum HOM05D007144 ORTHO05D008709 4.9e-12 75.1 66 57.6
Gohir.A07G120000 Gossypium hirsutum HOM05D007144 ORTHO05D008709 4.9e-12 75.1 51 70.6
Medtr3g088410 Medicago truncatula HOM05D007144 ORTHO05D008709 4.9e-12 75.1 56 58.9
TPR.G13466 Trifolium pratense HOM05D007144 ORTHO05D008709 6.4e-12 74.7 55 58.2
Ca_12164_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 8.3e-12 74.3 50 68.0
ECA236G5047 Erigeron canadensis HOM05D007144 ORTHO05D008709 8.3e-12 74.3 64 56.2
CsaV3_6G039020 Cucumis sativus L. HOM05D007144 ORTHO05D008709 1.4e-11 73.6 51 64.7
Ca_03986_v3 Cicer arietinum L. HOM05D007144 ORTHO05D008709 1.9e-11 73.2 50 66.0
Manes.02G140201 Manihot esculenta HOM05D007144 ORTHO05D008709 1.9e-11 73.2 51 72.5
AUR62000186 Chenopodium quinoa HOM05D007144 ORTHO05D008709 2.4e-11 72.8 48 72.9
MELO3C014563.2 Cucumis melo HOM05D007144 ORTHO05D008709 5.4e-11 71.6 48 66.7
Lj6g0012120 Lotus japonicus HOM05D007144 ORTHO05D008709 5.4e-11 71.6 50 68.0
TAR623G0360 Trochodendron aralioides HOM05D007144 ORTHO05D008709 5.4e-11 71.6 52 69.2
Cfa010657 Carpinus fangiana HOM05D007144 ORTHO05D008709 9.2e-11 70.9 54 63.0
Manes.01G179700 Manihot esculenta HOM05D007144 ORTHO05D008709 1.6e-10 70.1 46 76.1
Haze_23224 Corylus avellana HOM05D007144 ORTHO05D008709 2.7e-10 69.3 50 66.0
Haze_03594 Corylus avellana HOM05D007144 ORTHO05D008709 7.8e-10 67.8 50 64.0
Glyma.08G150200 Glycine max HOM05D007144 ORTHO05D008709 3.0e-09 65.9 50 62.0
Rhsim13G0210700 Rhododendron simsii HOM05D007144 ORTHO05D008709 3.9e-09 65.5 45 71.1
CANSAT54G2482 Cannabis sativa HOM05D007144 ORTHO05D008709 3.3e-08 62.4 49 61.2
Cre12.g484500 Chlamydomonas reinhardtii HOM05D007144 ORTHO05D008709 4.3e-08 62.0 63 50.8
Phvul.006G021300 Phaseolus vulgaris HOM05D007144 ORTHO05D008709 4.3e-08 62.0 41 68.3
Eucgr.B03730 Eucalyptus grandis HOM05D007144 ORTHO05D008709 2.8e-07 59.3 49 59.2
Mapoly0026s0092 Marchantia polymorpha HOM05D007144 ORTHO05D008709 4.7e-07 58.5 49 49.0
SMO164G0043 Selaginella moellendorffii HOM05D007144 ORTHO05D008709 4.7e-07 58.5 61 47.5
Psat1g051560 Pisum sativum HOM05D007144 ORTHO05D008709 6.2e-07 58.2 46 58.7
ClCG02G022890 Citrullus lanatus HOM05D007144 ORTHO05D008709 8.1e-07 57.8 55 52.7
CBR_g48945 Chara braunii HOM05D007144 ORTHO05D008709 1.1e-06 57.4 63 47.6
TWI23G1223 Tripterygium wilfordii HOM05D007144 ORTHO05D008709 1.1e-06 57.4 42 66.7
GSVIVG01037268001 Vitis vinifera HOM05D007144 ORTHO05D008709 1.4e-06 57.0 41 68.3
Lalb_Chr18g0054451 Lupinus albus HOM05D007144 ORTHO05D008709 3.1e-06 55.8 41 63.4
PRCOL_00000160 Prasinoderma coloniale HOM05D007144 ORTHO05D008709 5.2e-06 55.1 65 43.1
Hund21019 Selenicereus undatus HOM05D001964 ORTHO05D001879 5.2e-06 55.1 54 48.1
FAN03G0004 Fragaria x ananassa HOM05D000020 ORTHO05D001879 8.9e-06 54.3 70 37.1
FAN10G4031 Fragaria x ananassa HOM05D001964 ORTHO05D001879 8.9e-06 54.3 70 37.1
QL01p017309 Quercus lobata HOM05D007144 ORTHO05D008709 8.9e-06 54.3 42 59.5


User provided reference genes

Program Settings