Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 9.3e-264 912.9 438 100.0
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 1.4e-126 457.2 397 55.9
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 1.6e-122 443.7 391 53.7
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 3.3e-120 436.0 396 55.1
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 7.0e-118 428.3 386 55.7
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 5.0e-116 422.2 382 53.9
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 3.2e-115 419.5 379 54.1
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 9.4e-115 417.9 378 54.0
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 3.6e-114 416.0 395 52.2
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 1.4e-113 414.1 384 51.3
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 1.4e-113 414.1 329 59.0
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 1.8e-113 413.7 382 51.8
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 3.0e-113 412.9 398 51.5
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 8.8e-113 411.4 389 53.5
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 3.4e-112 409.5 399 52.1
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 4.4e-112 409.1 382 52.4
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 5.7e-112 408.7 381 52.0
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 1.7e-111 407.1 398 51.0
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 1.7e-111 407.1 386 52.8
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 3.7e-111 406.0 395 50.9
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 3.7e-111 406.0 459 46.4
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 4.8e-111 405.6 356 54.2
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 4.8e-111 405.6 356 53.9
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 2.4e-110 403.3 419 50.1
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 7.0e-110 401.7 392 51.8
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 3.5e-109 399.4 387 52.7
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 5.9e-109 398.7 382 49.7
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 5.9e-109 398.7 387 53.2
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 5.9e-109 398.7 387 51.4
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.0e-108 397.9 390 50.5
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 2.9e-108 396.4 390 52.6
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 8.5e-108 394.8 387 51.2
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 5.5e-107 392.1 385 50.9
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 3.6e-106 389.4 387 50.4
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 2.6e-104 383.3 406 49.5
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 7.5e-104 381.7 400 49.0
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 1.3e-103 380.9 458 44.8
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 1.7e-103 380.6 399 46.9
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 4.8e-103 379.0 382 51.3
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 1.4e-102 377.5 381 48.8
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 3.5e-101 372.9 380 51.3
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 6.6e-100 368.6 418 47.6
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 1.2e-98 364.4 368 48.9
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 4.7e-98 362.5 400 46.8
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.0e-97 361.3 392 48.5
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.0e-97 361.3 381 46.7
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 8.9e-97 358.2 388 46.6
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 8.9e-97 358.2 394 47.7
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 4.4e-96 355.9 395 46.3
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 1.7e-95 354.0 335 50.7
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 6.3e-95 352.1 406 45.1
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 4.5e-93 345.9 388 46.1
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 4.5e-93 345.9 389 45.0
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 4.5e-93 345.9 490 39.4
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 9.5e-91 338.2 400 46.0
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.0e-89 334.7 381 45.1
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 4.0e-89 332.8 398 45.2
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 4.9e-87 325.9 381 43.0
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 1.1e-86 324.7 366 47.5
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 4.6e-85 319.3 396 43.2
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 2.3e-84 317.0 394 42.9
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 6.6e-84 315.5 375 45.1
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 1.5e-83 314.3 372 45.2
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 1.5e-83 314.3 372 45.2
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 1.9e-83 313.9 299 52.8
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 3.3e-83 313.2 293 53.2
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 2.8e-82 310.1 394 42.6
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 2.8e-82 310.1 372 44.6
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 2.8e-82 310.1 288 53.1
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 3.1e-81 306.6 398 41.5
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 5.2e-81 305.8 375 44.5
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 2.9e-79 300.1 223 60.1
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 4.9e-79 299.3 416 39.2
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 5.4e-78 295.8 431 41.3
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 2.1e-77 293.9 299 50.2
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 6.0e-77 292.4 297 50.2
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 2.3e-76 290.4 291 50.9
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 4.3e-75 286.2 392 40.6
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 5.6e-75 285.8 323 48.0
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 4.4e-72 276.2 377 42.2
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 3.5e-69 266.5 236 53.0
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 6.0e-69 265.8 275 49.8
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 8.6e-68 261.9 264 50.4
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 5.6e-67 259.2 284 44.7
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 9.6e-67 258.5 275 45.8
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 1.6e-66 257.7 293 47.8
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 6.8e-65 252.3 263 48.7
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 4.4e-64 249.6 263 47.5
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 5.8e-64 249.2 279 45.5
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 4.9e-63 246.1 267 46.1
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 6.4e-63 245.7 289 46.4
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 1.9e-62 244.2 267 45.7
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 3.5e-61 240.0 372 38.4
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 3.5e-61 240.0 209 54.5
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 1.3e-60 238.0 314 42.0
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 3.0e-60 236.9 250 46.8
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 5.1e-60 236.1 269 46.5
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.1e-59 235.0 294 41.5
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 9.6e-59 231.9 250 46.4
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 3.2e-54 216.9 255 44.3
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 5.4e-54 216.1 253 43.9
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 2.7e-53 213.8 188 52.1
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 7.9e-53 212.2 262 43.5
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 7.9e-53 212.2 263 44.5
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 2.3e-52 210.7 262 42.7
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 2.3e-52 210.7 262 43.9
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 2.3e-52 210.7 258 41.5
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 3.0e-52 210.3 262 43.1
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 1.9e-51 207.6 262 44.3
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 3.3e-51 206.8 262 44.3
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 5.6e-51 206.1 262 43.5
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 9.6e-51 205.3 258 41.9
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 2.8e-50 203.8 262 43.5
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 6.2e-50 202.6 260 43.5
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 1.8e-49 201.1 262 42.7
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 1.8e-49 201.1 258 41.5
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 1.8e-49 201.1 262 42.4
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 1.2e-48 198.4 263 42.6
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 1.2e-48 198.4 250 44.4
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 2.2e-47 194.1 294 39.1
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 2.4e-46 190.7 252 44.0
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 1.2e-45 188.3 294 37.1
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 6.0e-45 186.0 216 45.8
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 3.0e-44 183.7 258 38.0
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 6.7e-44 182.6 319 36.7
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 1.1e-41 175.3 207 45.4
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.8e-41 174.5 289 36.3
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.2e-40 171.8 204 47.1
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 4.9e-39 166.4 129 59.7
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 4.6e-37 159.8 154 48.1
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 1.3e-31 141.7 211 40.8
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 4.2e-30 136.7 288 32.3
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 1.8e-28 131.3 180 40.0
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 1.1e-27 128.6 158 44.3
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 1.9e-27 127.9 158 46.2
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 3.3e-27 127.1 225 35.1
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 1.0e-23 115.5 259 29.7
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 1.0e-23 115.5 176 39.8
Haze_01447 Corylus avellana HOM05D001295 ORTHO05D005319 1.4e-22 111.7 68 67.6
Lalb_Chr14g0372561 Lupinus albus HOM05D001295 ORTHO05D005319 3.3e-19 100.5 60 68.3
Glyma.13G345802 Glycine max HOM05D001295 ORTHO05D005319 4.8e-18 96.7 124 46.0
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 2.4e-17 94.4 72 61.1
Cre16.g668650 Chlamydomonas reinhardtii HOM05D001295 ORTHO05D005319 7.9e-13 79.3 122 36.9
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 9.7e-11 72.4 56 57.1
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 7.0e-09 66.2 88 38.6
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 2.6e-08 64.3 181 28.7
Medtr2g027210 Medicago truncatula HOM05D001295 ORTHO05D005319 4.5e-08 63.5 100 38.0
AL4G36180 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 5.9e-08 63.2 129 37.2


User provided reference genes

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