Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 7.8e-71 270.4 140 100.0
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 1.1e-48 196.8 115 82.6
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 3.2e-48 195.3 115 81.7
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 9.2e-48 193.7 120 79.2
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.2e-47 193.4 133 72.2
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 2.1e-47 192.6 114 83.3
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 2.7e-47 192.2 127 75.6
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 3.5e-47 191.8 114 81.6
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 4.6e-47 191.4 115 79.1
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 4.6e-47 191.4 126 77.0
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 7.8e-47 190.7 130 72.3
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 1.0e-46 190.3 119 77.3
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 1.0e-46 190.3 115 80.9
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 1.0e-46 190.3 113 80.5
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.3e-46 189.9 110 82.7
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 3.9e-46 188.3 114 79.8
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 3.9e-46 188.3 113 77.9
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 3.9e-46 188.3 117 78.6
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 5.1e-46 188.0 116 81.9
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 5.1e-46 188.0 115 79.1
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 8.6e-46 187.2 129 69.8
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 8.6e-46 187.2 113 77.9
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 1.1e-45 186.8 112 83.0
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 1.1e-45 186.8 114 78.9
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 1.5e-45 186.4 111 81.1
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 2.5e-45 185.7 113 81.4
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 2.5e-45 185.7 113 77.0
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 2.5e-45 185.7 115 77.4
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 2.5e-45 185.7 110 82.7
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 4.3e-45 184.9 113 77.9
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 5.6e-45 184.5 113 79.6
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 5.6e-45 184.5 138 68.8
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 5.6e-45 184.5 113 75.2
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 7.3e-45 184.1 115 76.5
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 9.6e-45 183.7 112 79.5
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 1.2e-44 183.3 113 78.8
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 1.2e-44 183.3 113 78.8
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 2.1e-44 182.6 126 71.4
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 2.1e-44 182.6 112 76.8
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 2.8e-44 182.2 128 69.5
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 2.8e-44 182.2 113 73.5
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 2.8e-44 182.2 113 77.0
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 2.8e-44 182.2 112 78.6
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 2.8e-44 182.2 112 79.5
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 3.6e-44 181.8 114 76.3
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 4.7e-44 181.4 134 68.7
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 4.7e-44 181.4 113 77.9
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 6.2e-44 181.0 115 75.7
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 6.2e-44 181.0 114 78.1
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 6.2e-44 181.0 135 67.4
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 6.2e-44 181.0 115 75.7
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 8.1e-44 180.6 113 77.0
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 8.1e-44 180.6 118 75.4
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 8.1e-44 180.6 113 77.0
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 1.1e-43 180.3 113 77.0
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 1.8e-43 179.5 113 76.1
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 1.8e-43 179.5 113 76.1
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 1.8e-43 179.5 113 76.1
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 1.8e-43 179.5 113 76.1
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 1.8e-43 179.5 113 75.2
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 2.4e-43 179.1 137 65.7
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 3.1e-43 178.7 114 74.6
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 3.1e-43 178.7 112 77.7
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 4.0e-43 178.3 113 75.2
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 4.0e-43 178.3 120 74.2
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 5.2e-43 177.9 121 71.9
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 6.9e-43 177.6 109 78.0
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 6.9e-43 177.6 113 76.1
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 8.9e-43 177.2 133 65.4
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 1.5e-42 176.4 112 75.9
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 2.0e-42 176.0 112 74.1
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 3.4e-42 175.3 117 73.5
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 3.4e-42 175.3 112 74.1
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 3.4e-42 175.3 112 76.8
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 5.8e-42 174.5 109 77.1
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 9.9e-42 173.7 113 74.3
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 1.3e-41 173.3 138 65.9
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 1.7e-41 172.9 122 70.5
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 2.9e-41 172.2 113 72.6
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 2.9e-41 172.2 138 63.0
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 3.8e-41 171.8 112 74.1
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 4.9e-41 171.4 113 73.5
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 1.1e-40 170.2 108 75.9
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 1.1e-40 170.2 112 74.1
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 3.2e-40 168.7 113 69.9
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 4.6e-39 164.9 110 71.8
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 5.1e-38 161.4 132 65.2
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 1.1e-37 160.2 137 58.4
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 1.5e-37 159.8 106 75.5
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.5e-37 159.8 112 69.6
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 4.3e-37 158.3 114 66.7
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 7.3e-37 157.5 120 64.2
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 9.6e-37 157.1 114 69.3
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 9.6e-37 157.1 115 67.0
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 1.3e-36 156.8 113 65.5
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 2.1e-36 156.0 136 59.6
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 2.8e-36 155.6 113 67.3
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 3.6e-36 155.2 94 79.8
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 4.8e-36 154.8 115 64.3
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 4.8e-36 154.8 107 69.2
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 6.2e-36 154.5 115 66.1
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 1.4e-35 153.3 115 61.7
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 2.4e-35 152.5 115 63.5
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 2.4e-35 152.5 117 68.4
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 5.3e-35 151.4 133 59.4
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 3.4e-34 148.7 115 64.3
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 9.9e-34 147.1 108 65.7
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 9.9e-34 147.1 112 68.8
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 2.2e-33 146.0 110 64.5
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 3.8e-33 145.2 94 75.5
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 4.9e-33 144.8 130 56.2
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 6.4e-33 144.4 103 66.0
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 8.4e-33 144.1 91 74.7
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 7.1e-32 141.0 119 58.8
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 6.0e-31 137.9 96 66.7
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 3.0e-30 135.6 115 62.6
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 3.9e-30 135.2 79 77.2
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 1.1e-29 133.7 112 59.8
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.9e-29 132.9 111 64.9
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 3.3e-29 132.1 83 71.1
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 5.6e-29 131.3 113 58.4
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 9.6e-29 130.6 137 49.6
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 9.6e-29 130.6 103 60.2
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 1.3e-28 130.2 112 57.1
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 2.1e-28 129.4 112 60.7
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 5.8e-26 121.3 83 67.5
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 9.9e-26 120.6 109 56.9
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 2.2e-25 119.4 94 64.9
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 8.4e-25 117.5 70 84.3
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 1.4e-24 116.7 115 56.5
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.9e-24 116.3 69 79.7
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 2.4e-24 115.9 70 78.6
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 3.2e-24 115.5 71 77.5
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 1.3e-22 110.2 68 79.4
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 1.1e-21 107.1 90 66.7
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 1.9e-21 106.3 113 54.0
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.4e-19 99.4 139 44.6
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 1.5e-18 96.7 121 49.6
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 3.4e-18 95.5 71 59.2
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 1.0e-17 94.0 70 67.1
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 1.1e-16 90.5 107 49.5
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 1.6e-15 86.7 62 67.7
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 3.7e-12 75.5 54 70.4
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 8.2e-12 74.3 115 41.7
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 2.0e-10 69.7 51 64.7
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 2.9e-09 65.9 57 56.1
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 6.5e-09 64.7 118 37.3
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 5.5e-08 61.6 47 48.9
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 4.6e-07 58.5 43 65.1


User provided reference genes

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