Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 8.9e-69 263.5 132 100.0
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 4.2e-58 228.0 127 85.0
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 5.4e-58 227.6 127 87.4
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 5.4e-58 227.6 127 86.6
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 9.3e-58 226.9 127 85.0
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 9.3e-58 226.9 127 85.0
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 2.1e-57 225.7 127 84.3
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 2.1e-57 225.7 127 84.3
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 2.1e-57 225.7 127 84.3
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 2.1e-57 225.7 127 82.7
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 2.7e-57 225.3 127 86.6
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 2.7e-57 225.3 127 84.3
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 2.7e-57 225.3 128 82.8
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 4.6e-57 224.6 127 81.9
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 4.6e-57 224.6 127 85.0
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 4.6e-57 224.6 127 84.3
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 6.0e-57 224.2 127 84.3
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 6.0e-57 224.2 127 83.5
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 6.0e-57 224.2 129 82.2
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 7.9e-57 223.8 127 83.5
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 1.0e-56 223.4 127 82.7
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 1.0e-56 223.4 127 82.7
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 1.0e-56 223.4 127 83.5
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 1.0e-56 223.4 127 81.9
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 1.3e-56 223.0 131 83.2
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 1.8e-56 222.6 127 82.7
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 2.3e-56 222.2 129 83.7
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 2.3e-56 222.2 127 82.7
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 2.3e-56 222.2 127 83.5
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 3.0e-56 221.9 127 81.1
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 3.0e-56 221.9 127 82.7
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 3.9e-56 221.5 127 83.5
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 5.1e-56 221.1 127 80.3
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 5.1e-56 221.1 127 80.3
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 5.1e-56 221.1 127 80.3
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 5.1e-56 221.1 129 82.9
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 6.7e-56 220.7 127 80.3
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 6.7e-56 220.7 127 80.3
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 6.7e-56 220.7 127 80.3
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 6.7e-56 220.7 127 82.7
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 6.7e-56 220.7 126 84.1
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 8.7e-56 220.3 127 80.3
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 8.7e-56 220.3 127 80.3
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 8.7e-56 220.3 127 82.7
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 8.7e-56 220.3 127 82.7
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 8.7e-56 220.3 127 82.7
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 8.7e-56 220.3 127 82.7
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 1.1e-55 219.9 127 81.1
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.1e-55 219.9 127 81.9
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.1e-55 219.9 127 81.9
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 1.5e-55 219.5 127 79.5
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.5e-55 219.5 127 81.9
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 1.9e-55 219.2 127 82.7
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.5e-55 218.8 127 81.9
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.5e-55 218.8 127 81.9
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 2.5e-55 218.8 127 82.7
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 2.5e-55 218.8 127 79.5
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 2.5e-55 218.8 127 79.5
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 3.3e-55 218.4 127 81.9
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 3.3e-55 218.4 127 79.5
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 3.3e-55 218.4 127 82.7
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 4.3e-55 218.0 127 82.7
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 4.3e-55 218.0 127 83.5
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 4.3e-55 218.0 127 81.1
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 5.6e-55 217.6 127 81.1
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 7.4e-55 217.2 127 81.9
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 9.6e-55 216.9 127 79.5
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 1.3e-54 216.5 127 78.7
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 1.3e-54 216.5 127 79.5
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 1.6e-54 216.1 127 78.7
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 1.6e-54 216.1 127 78.7
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 1.6e-54 216.1 127 84.3
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 2.1e-54 215.7 127 80.3
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 2.1e-54 215.7 127 79.5
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 2.8e-54 215.3 127 78.0
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 2.8e-54 215.3 127 78.0
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 2.8e-54 215.3 127 78.7
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 2.8e-54 215.3 127 81.1
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 3.7e-54 214.9 127 81.9
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 4.8e-54 214.5 127 81.1
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 4.8e-54 214.5 127 81.9
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 6.2e-54 214.2 127 83.5
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 6.2e-54 214.2 127 78.7
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 1.4e-53 213.0 127 78.7
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 1.8e-53 212.6 127 78.0
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 2.4e-53 212.2 127 80.3
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 2.4e-53 212.2 127 80.3
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 2.4e-53 212.2 127 80.3
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 2.4e-53 212.2 128 79.7
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 2.4e-53 212.2 127 78.7
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 4.0e-53 211.5 127 77.2
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 5.3e-53 211.1 128 76.6
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 5.3e-53 211.1 126 81.7
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 5.3e-53 211.1 127 81.1
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 6.9e-53 210.7 127 77.2
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 1.2e-52 209.9 127 78.7
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 2.6e-52 208.8 127 75.6
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 3.4e-52 208.4 127 78.7
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 4.5e-52 208.0 127 76.4
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 5.8e-52 207.6 127 75.6
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 7.6e-52 207.2 127 78.7
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 9.9e-52 206.8 127 76.4
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 1.3e-51 206.5 148 68.9
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 1.3e-51 206.5 127 73.2
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 1.7e-51 206.1 127 78.0
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 2.2e-51 205.7 127 76.4
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 2.9e-51 205.3 127 76.4
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 2.9e-51 205.3 126 77.0
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 4.9e-51 204.5 127 77.2
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 6.4e-51 204.1 127 74.0
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 1.1e-50 203.4 127 74.8
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 1.9e-50 202.6 126 73.8
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.9e-50 202.6 127 73.2
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 1.9e-50 202.6 127 74.0
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 2.4e-50 202.2 127 74.0
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 5.5e-50 201.1 127 74.0
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 7.1e-50 200.7 127 72.4
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 7.1e-50 200.7 127 72.4
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 9.3e-50 200.3 127 71.7
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 9.3e-50 200.3 127 72.4
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 9.3e-50 200.3 127 71.7
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 3.5e-49 198.4 127 71.7
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 6.0e-49 197.6 143 67.8
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 7.9e-49 197.2 127 70.1
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 3.0e-48 195.3 127 72.4
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 1.5e-47 193.0 127 73.2
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 4.3e-47 191.4 127 71.7
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 1.6e-46 189.5 127 68.5
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 6.2e-46 187.6 127 70.1
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 4.0e-45 184.9 127 68.5
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 1.2e-44 183.3 130 73.1
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 1.1e-42 176.8 127 66.1
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 3.5e-41 171.8 94 85.1
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 1.8e-40 169.5 107 76.6
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 3.9e-40 168.3 111 72.1
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 5.1e-40 167.9 127 60.6
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 1.1e-39 166.8 95 83.2
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 2.2e-38 162.5 95 80.0
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 6.3e-38 161.0 112 66.1
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 1.1e-37 160.2 91 84.6
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 7.6e-36 154.1 95 73.7
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 3.8e-35 151.8 92 77.2
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 8.5e-35 150.6 96 75.0
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 1.6e-33 146.4 90 75.6
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 2.1e-33 146.0 127 52.0
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 3.9e-32 141.7 128 52.3
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 2.8e-30 135.6 74 85.1
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 1.4e-29 133.3 77 80.5
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.8e-29 132.9 91 69.2
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 1.4e-26 123.2 66 86.4
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 1.4e-24 116.7 74 74.3
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.8e-22 109.0 101 61.4
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 1.4e-21 106.7 65 76.9
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 3.1e-21 105.5 68 67.6
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 1.2e-20 103.6 66 68.2
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 5.9e-20 101.3 101 57.4
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.3e-19 100.1 116 52.6
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 1.3e-19 100.1 66 77.3
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 2.9e-19 99.0 92 50.0
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 3.8e-19 98.6 72 66.7
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 1.4e-18 96.7 71 64.8
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 8.2e-14 80.9 53 66.0
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 1.4e-13 80.1 42 83.3
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 1.8e-13 79.7 42 81.0
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 4.1e-13 78.6 125 43.2
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 6.5e-11 71.2 36 86.1
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 5.5e-10 68.2 37 81.1
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 4.4e-07 58.5 61 39.3
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 7.5e-07 57.8 33 81.8
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 2.8e-06 55.8 33 78.8


User provided reference genes

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