Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 1.6e-82 309.3 153 100.0
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 1.2e-53 213.4 140 72.9
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 4.0e-52 208.4 139 71.2
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 2.6e-51 205.7 140 69.3
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 9.8e-51 203.8 141 68.1
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 2.2e-50 202.6 140 69.3
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 2.2e-50 202.6 138 69.6
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 2.2e-50 202.6 143 67.1
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 2.4e-49 199.1 140 69.3
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 3.1e-49 198.7 140 66.4
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 4.1e-49 198.4 140 65.7
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 4.1e-49 198.4 146 65.8
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 7.0e-49 197.6 140 67.9
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 7.0e-49 197.6 143 66.4
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 9.1e-49 197.2 144 66.7
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 1.2e-48 196.8 140 67.9
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.6e-48 196.4 140 67.1
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 3.5e-48 195.3 140 66.4
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 4.5e-48 194.9 141 64.5
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 5.9e-48 194.5 140 65.0
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 7.7e-48 194.1 140 66.4
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 7.7e-48 194.1 140 66.4
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 7.7e-48 194.1 145 64.8
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 1.0e-47 193.7 140 64.3
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 1.0e-47 193.7 140 62.1
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 1.0e-47 193.7 138 66.7
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 1.7e-47 193.0 140 62.1
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 1.7e-47 193.0 140 62.1
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 2.9e-47 192.2 135 65.2
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 2.9e-47 192.2 135 65.2
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 2.9e-47 192.2 135 65.2
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 2.9e-47 192.2 135 65.9
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 3.8e-47 191.8 140 63.6
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 5.0e-47 191.4 140 65.0
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 8.5e-47 190.7 140 64.3
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 1.1e-46 190.3 138 64.5
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 1.1e-46 190.3 140 60.7
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 1.1e-46 190.3 137 65.7
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 1.1e-46 190.3 137 65.7
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 1.5e-46 189.9 140 66.4
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.5e-46 189.9 137 65.7
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 1.5e-46 189.9 140 64.3
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.5e-46 189.9 137 66.4
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 1.9e-46 189.5 140 63.6
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 3.2e-46 188.7 140 63.6
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 5.5e-46 188.0 137 65.0
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 5.5e-46 188.0 135 64.4
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 5.5e-46 188.0 138 63.8
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 7.2e-46 187.6 137 63.5
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 7.2e-46 187.6 137 63.5
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 9.4e-46 187.2 137 64.2
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 9.4e-46 187.2 140 65.0
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.2e-45 186.8 137 63.5
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 2.7e-45 185.7 140 60.0
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 2.7e-45 185.7 140 61.4
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 2.7e-45 185.7 140 62.1
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 3.6e-45 185.3 140 62.1
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 4.7e-45 184.9 135 65.2
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 4.7e-45 184.9 140 62.9
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 6.1e-45 184.5 140 61.4
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 6.1e-45 184.5 135 61.5
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 8.0e-45 184.1 141 62.4
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 1.0e-44 183.7 140 62.1
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 1.4e-44 183.3 135 66.7
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 2.3e-44 182.6 139 59.7
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 2.3e-44 182.6 135 64.4
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 3.0e-44 182.2 143 60.1
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.0e-44 182.2 137 61.3
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 3.0e-44 182.2 135 63.0
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 3.0e-44 182.2 140 59.3
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 4.0e-44 181.8 140 62.9
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 4.0e-44 181.8 135 63.0
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 4.0e-44 181.8 140 60.7
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 4.0e-44 181.8 137 60.6
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 5.2e-44 181.4 135 63.0
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 5.2e-44 181.4 140 60.0
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 6.8e-44 181.0 140 62.1
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 2.0e-43 179.5 135 62.2
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 2.0e-43 179.5 140 60.7
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.6e-43 179.1 140 59.3
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 2.6e-43 179.1 140 57.9
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.6e-43 179.1 140 60.7
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.6e-43 179.1 140 60.7
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 3.4e-43 178.7 140 60.7
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 4.4e-43 178.3 149 59.1
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 5.7e-43 177.9 160 58.1
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 7.5e-43 177.6 140 58.6
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 7.5e-43 177.6 140 60.0
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 7.5e-43 177.6 140 60.0
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 7.5e-43 177.6 140 60.0
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 9.8e-43 177.2 140 57.9
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 9.8e-43 177.2 140 60.0
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 1.3e-42 176.8 129 65.9
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 1.7e-42 176.4 137 59.1
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.2e-42 176.0 140 59.3
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 2.8e-42 175.6 140 57.9
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 2.8e-42 175.6 140 57.9
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 3.7e-42 175.3 140 60.7
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 1.4e-41 173.3 210 45.2
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 1.4e-41 173.3 151 53.6
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 3.1e-41 172.2 148 56.8
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 5.4e-41 171.4 140 56.4
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 7.0e-41 171.0 143 58.7
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 1.2e-40 170.2 147 55.1
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 2.0e-40 169.5 143 57.3
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 2.7e-40 169.1 145 55.2
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 2.7e-40 169.1 140 58.6
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 5.9e-40 167.9 169 51.5
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 7.7e-40 167.5 140 58.6
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 7.7e-40 167.5 148 56.1
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 2.3e-39 166.0 150 52.7
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 2.9e-39 165.6 140 56.4
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 3.8e-39 165.2 140 61.4
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 6.6e-39 164.5 141 54.6
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 1.1e-38 163.7 151 52.3
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 1.1e-38 163.7 140 59.3
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.1e-38 163.7 139 54.0
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 1.5e-38 163.3 140 56.4
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 2.5e-38 162.5 140 54.3
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 1.2e-37 160.2 140 55.0
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 1.6e-37 159.8 140 53.6
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.8e-37 159.1 135 56.3
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 3.6e-37 158.7 145 51.0
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 3.6e-37 158.7 140 53.6
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.4e-36 156.8 145 50.3
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 2.3e-36 156.0 145 51.0
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 4.0e-36 155.2 145 49.0
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 1.5e-35 153.3 145 49.7
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 9.8e-35 150.6 141 50.4
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 2.9e-34 149.1 140 50.7
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 2.9e-34 149.1 140 50.7
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 2.9e-34 149.1 140 50.7
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 2.9e-34 149.1 140 50.7
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 2.9e-34 149.1 140 50.7
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 3.7e-34 148.7 150 47.3
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 1.1e-33 147.1 183 45.4
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 1.7e-31 139.8 106 60.4
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 1.7e-31 139.8 106 60.4
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 1.5e-30 136.7 101 62.4
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 1.2e-29 133.7 145 46.2
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.0e-28 130.6 130 53.1
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.4e-28 130.2 82 73.2
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 1.8e-28 129.8 144 45.8
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 1.2e-27 127.1 105 55.2
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 2.0e-27 126.3 141 48.2
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 4.4e-27 125.2 82 69.5
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 2.2e-26 122.9 147 43.5
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 4.9e-26 121.7 82 67.1
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 1.1e-25 120.6 92 60.9
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 1.4e-25 120.2 91 54.9
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 9.2e-25 117.5 105 52.4
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 2.7e-24 115.9 127 48.8
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 2.7e-24 115.9 127 48.8
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 1.3e-23 113.6 82 63.4
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 1.9e-22 109.8 136 39.0
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 2.5e-22 109.4 146 39.7
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 1.4e-20 103.6 143 32.9
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 2.0e-19 99.8 145 41.4
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 7.5e-19 97.8 88 51.1
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 1.7e-18 96.7 80 53.8
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 7.1e-17 91.3 139 31.7
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.1e-16 89.7 96 44.8
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 1.9e-14 83.2 150 30.0
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 2.8e-13 79.3 146 33.6
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 6.2e-13 78.2 71 54.9
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 2.3e-12 76.3 109 31.2
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 9.9e-11 70.9 52 59.6
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 1.7e-10 70.1 99 37.4
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.9e-10 69.3 77 49.4
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 7.1e-09 64.7 132 25.8
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 4.6e-08 62.0 44 56.8
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 3.9e-07 58.9 80 36.2
Cre12.g551900 Chlamydomonas reinhardtii HOM05D003922 ORTHO05D004492 8.6e-07 57.8 134 24.6
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 2.5e-06 56.2 39 64.1


User provided reference genes

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