Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0743G133 Amborella trichopoda HOM05D006500 ORTHO05D008028 8.8e-87 323.6 160 100.0
DCAR_023930 Daucus carota HOM05D006500 ORTHO05D008028 8.3e-61 237.3 149 73.2
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 3.2e-60 235.3 142 75.4
GSVIVG01038143001 Vitis vinifera HOM05D006500 ORTHO05D008028 1.2e-59 233.4 137 78.1
COL.COLO4_08138 Corchorus olitorius HOM05D006500 ORTHO05D008028 1.6e-59 233.0 152 69.7
TAR365G1104 Trochodendron aralioides HOM05D006500 ORTHO05D008028 1.6e-59 233.0 139 76.3
Nn1g09644 Nelumbo nucifera HOM05D006500 ORTHO05D008028 6.0e-59 231.1 156 68.6
Thecc.04G165600 Theobroma cacao HOM05D006500 ORTHO05D008028 7.8e-59 230.7 135 74.1
TWI38G1400 Tripterygium wilfordii HOM05D006500 ORTHO05D008028 7.8e-59 230.7 150 72.0
CiPaw.02G100400 Carya illinoinensis HOM05D006500 ORTHO05D008028 1.3e-58 229.9 148 73.6
vmacro00698 Vaccinium macrocarpon HOM05D006500 ORTHO05D008028 1.3e-58 229.9 149 69.8
Gohir.D05G327900 Gossypium hirsutum HOM05D006500 ORTHO05D008028 1.7e-58 229.6 154 67.5
Gorai.009G351800 Gossypium raimondii HOM05D006500 ORTHO05D008028 1.7e-58 229.6 154 67.5
CSS0014789 Camellia sinensis var. sinensis HOM05D006500 ORTHO05D008028 2.3e-58 229.2 156 67.3
Cpa.g.sc9.364 Carica papaya HOM05D006500 ORTHO05D008028 2.3e-58 229.2 148 70.3
CiPaw.01G170700 Carya illinoinensis HOM05D006500 ORTHO05D008028 2.3e-58 229.2 135 74.8
Glyma.07G207800 Glycine max HOM05D006500 ORTHO05D008028 2.3e-58 229.2 137 76.6
Gohir.A05G327700 Gossypium hirsutum HOM05D006500 ORTHO05D008028 2.3e-58 229.2 154 67.5
Medtr4g087310 Medicago truncatula HOM05D006500 ORTHO05D008028 2.3e-58 229.2 152 69.7
Peaxi162Scf00180g00116 Petunia axillaris HOM05D006500 ORTHO05D008028 3.9e-58 228.4 151 70.2
Potri.019G112100 Populus trichocarpa HOM05D006500 ORTHO05D008028 6.6e-58 227.6 149 69.8
FAN12G2511 Fragaria x ananassa HOM05D006500 ORTHO05D008028 8.6e-58 227.3 138 72.5
FAN17G0772 Fragaria x ananassa HOM05D006500 ORTHO05D008028 8.6e-58 227.3 137 72.3
Nitab4.5_0001586g0010 Nicotiana tabacum HOM05D006500 ORTHO05D008028 8.6e-58 227.3 150 70.7
EL10Ac3g06088 Beta vulgaris HOM05D006500 ORTHO05D008028 1.1e-57 226.9 152 69.1
Lalb_Chr09g0328101 Lupinus albus HOM05D006500 ORTHO05D008028 1.1e-57 226.9 153 68.6
QL10p055774 Quercus lobata HOM05D006500 ORTHO05D008028 1.1e-57 226.9 151 70.9
Rhsim09G0010200 Rhododendron simsii HOM05D006500 ORTHO05D008028 1.1e-57 226.9 149 70.5
Duzib268G0518 Durio zibethinus HOM05D006500 ORTHO05D008028 1.5e-57 226.5 134 73.1
Lsat_1_v5_gn_1_74920 Lactuca sativa HOM05D006500 ORTHO05D008028 1.5e-57 226.5 145 69.7
HPP92_003580 Vanilla planifolia HOM05D006500 ORTHO05D008028 1.5e-57 226.5 143 71.3
Dinv33205 Davidia involucrata HOM05D006500 ORTHO05D008028 2.5e-57 225.7 149 70.5
Duzib151G0460 Durio zibethinus HOM05D006500 ORTHO05D008028 2.5e-57 225.7 134 73.9
THA.LOC104800923 Tarenaya hassleriana HOM05D006500 ORTHO05D008028 2.5e-57 225.7 161 65.8
Sabra19G0108100 Salix brachista HOM05D006500 ORTHO05D008028 3.3e-57 225.3 149 69.1
Carub.0001s0507 Capsella rubella HOM05D006500 ORTHO05D008028 4.3e-57 224.9 155 63.9
CAN.G136.13 Capsicum annuum HOM05D006500 ORTHO05D008028 4.3e-57 224.9 153 69.9
Sed0015541 Sechium edule HOM05D006500 ORTHO05D008028 4.3e-57 224.9 133 75.9
Actinidia27113 Actinidia chinensis HOM05D006500 ORTHO05D008028 5.6e-57 224.6 148 67.6
Aqoxy2G00124 Aquilegia oxysepala HOM05D006500 ORTHO05D008028 5.6e-57 224.6 151 69.5
AL1G15630 Arabidopsis lyrata HOM05D006500 ORTHO05D008028 5.6e-57 224.6 156 64.7
Hund03202 Selenicereus undatus HOM05D006500 ORTHO05D008028 5.6e-57 224.6 152 67.1
AUR62023794 Chenopodium quinoa HOM05D006500 ORTHO05D008028 7.3e-57 224.2 156 65.4
FvH4_4g10450 Fragaria vesca HOM05D006500 ORTHO05D008028 7.3e-57 224.2 134 73.1
Glyma.02G137600 Glycine max HOM05D006500 ORTHO05D008028 7.3e-57 224.2 137 73.7
ClCG06G001100 Citrullus lanatus HOM05D006500 ORTHO05D008028 9.5e-57 223.8 133 75.2
Lj4g0023361 Lotus japonicus HOM05D006500 ORTHO05D008028 9.5e-57 223.8 147 70.1
PSO732G0103 Papaver somniferum HOM05D006500 ORTHO05D008028 9.5e-57 223.8 139 71.9
Solyc06g053430.4 Solanum lycopersicum HOM05D006500 ORTHO05D008028 9.5e-57 223.8 149 71.8
Sopen06g018490 Solanum pennellii HOM05D006500 ORTHO05D008028 9.5e-57 223.8 149 71.8
PGSC0003DMG400016334 Solanum tuberosum HOM05D006500 ORTHO05D008028 9.5e-57 223.8 149 71.8
AT1G05720 Arabidopsis thaliana HOM05D006500 ORTHO05D008028 1.2e-56 223.4 157 65.0
SalBow3G2241 Salvia bowleyana HOM05D006500 ORTHO05D008028 1.2e-56 223.4 142 71.8
Sed0014008 Sechium edule HOM05D006500 ORTHO05D008028 1.2e-56 223.4 137 72.3
VMungo0251G2572 Vigna mungo HOM05D006500 ORTHO05D008028 1.2e-56 223.4 137 73.7
Phvul.003G296700 Phaseolus vulgaris HOM05D006500 ORTHO05D008028 1.6e-56 223.0 151 68.9
Psat7g120240 Pisum sativum HOM05D006500 ORTHO05D008028 1.6e-56 223.0 148 68.2
RcHm_v2.0_Chr4g0405941 Rosa chinensis HOM05D006500 ORTHO05D008028 2.1e-56 222.6 133 72.9
Sp1g04540 Schrenkiella parvula HOM05D006500 ORTHO05D008028 2.1e-56 222.6 143 69.2
AUR62002395 Chenopodium quinoa HOM05D006500 ORTHO05D008028 2.8e-56 222.2 156 65.4
Hma1.2p1_0108F.1_g051720 Hydrangea macrophylla HOM05D006500 ORTHO05D008028 2.8e-56 222.2 155 67.1
CsaV3_6G007030 Cucumis sativus L. HOM05D006500 ORTHO05D008028 3.6e-56 221.9 135 74.1
Manes.11G129200 Manihot esculenta HOM05D006500 ORTHO05D008028 3.6e-56 221.9 151 68.9
PSO675G9108 Papaver somniferum HOM05D006500 ORTHO05D008028 3.6e-56 221.9 150 68.0
Nitab4.5_0002544g0040 Nicotiana tabacum HOM05D006500 ORTHO05D008028 4.7e-56 221.5 150 68.7
Prupe.1G207200 Prunus persica HOM05D006500 ORTHO05D008028 4.7e-56 221.5 133 73.7
Ciclev10022516m.g Citrus clementina HOM05D006500 ORTHO05D008028 6.2e-56 221.1 160 63.8
MD17G1177800 Malus domestica HOM05D006500 ORTHO05D008028 6.2e-56 221.1 152 69.1
BcaC07g42119 Brassica carinata HOM05D006500 ORTHO05D008028 8.1e-56 220.7 154 65.6
BraA09t42063Z Brassica rapa HOM05D006500 ORTHO05D008028 8.1e-56 220.7 138 69.6
Potri.013G126900 Populus trichocarpa HOM05D006500 ORTHO05D008028 8.1e-56 220.7 149 68.5
Migut.G01179 Erythranthe guttata HOM05D006500 ORTHO05D008028 1.1e-55 220.3 132 75.0
SEGI_07767 Sequoiadendron giganteum HOM05D006500 ORTHO05D008028 1.1e-55 220.3 151 68.2
CARHR005240 Cardamine hirsuta HOM05D006500 ORTHO05D008028 1.4e-55 219.9 143 68.5
Thhalv10008926m.g Eutrema salsugineum HOM05D006500 ORTHO05D008028 1.4e-55 219.9 153 64.1
SGA_v2.0_scaffold283G46959 Striga asiatica HOM05D006500 ORTHO05D008028 1.4e-55 219.9 132 74.2
BcaC07g42115 Brassica carinata HOM05D006500 ORTHO05D008028 1.8e-55 219.5 138 68.8
BcaC07g42118 Brassica carinata HOM05D006500 ORTHO05D008028 1.8e-55 219.5 138 68.8
A09p67320 Brassica napus HOM05D006500 ORTHO05D008028 1.8e-55 219.5 138 68.8
C08p51630 Brassica napus HOM05D006500 ORTHO05D008028 1.8e-55 219.5 138 68.8
BolC8t52691H Brassica oleracea HOM05D006500 ORTHO05D008028 1.8e-55 219.5 138 68.8
Ca_18638_v3 Cicer arietinum L. HOM05D006500 ORTHO05D008028 1.8e-55 219.5 140 70.7
MELO3C022425.2 Cucumis melo HOM05D006500 ORTHO05D008028 2.3e-55 219.2 133 72.9
Eucgr.A00110 Eucalyptus grandis HOM05D006500 ORTHO05D008028 2.3e-55 219.2 150 68.0
Eucgr.A00287 Eucalyptus grandis HOM05D006500 ORTHO05D008028 2.3e-55 219.2 150 68.0
MD04G1049100 Malus domestica HOM05D006500 ORTHO05D008028 2.3e-55 219.2 149 67.8
Oeu050336.1 Olea europaea HOM05D006500 ORTHO05D008028 2.3e-55 219.2 144 70.8
Cc03_g14120 Coffea canephora HOM05D006500 ORTHO05D008028 3.1e-55 218.8 153 68.0
arahy.Tifrunner.gnm1.ann1.A3K5YX Arachis hypogaea HOM05D006500 ORTHO05D008028 4.0e-55 218.4 137 70.1
arahy.Tifrunner.gnm1.ann1.SHKR8E Arachis hypogaea HOM05D006500 ORTHO05D008028 4.0e-55 218.4 137 70.1
MSTRG.4301 Avicennia marina HOM05D006500 ORTHO05D008028 5.2e-55 218.0 132 73.5
CDE04G3295 Ceratophyllum demersum HOM05D006500 ORTHO05D008028 6.8e-55 217.6 147 66.0
Atru.chr4.1419 Acer truncatum HOM05D006500 ORTHO05D008028 1.5e-54 216.5 154 64.3
CANSAT56G1821 Cannabis sativa HOM05D006500 ORTHO05D008028 1.5e-54 216.5 149 66.4
Sc25g0002800 Simmondsia chinensis HOM05D006500 ORTHO05D008028 2.0e-54 216.1 149 65.1
Oeu015723.1 Olea europaea HOM05D006500 ORTHO05D008028 2.6e-54 215.7 145 69.0
BraA08t35535Z Brassica rapa HOM05D006500 ORTHO05D008028 9.9e-54 213.8 146 67.1
BcaB03g13492 Brassica carinata HOM05D006500 ORTHO05D008028 1.3e-53 213.4 155 61.9
ECA248G2222 Erigeron canadensis HOM05D000003 ORTHO05D008028 1.3e-53 213.4 132 72.0
BolC8t47013H Brassica oleracea HOM05D006500 ORTHO05D008028 2.2e-53 212.6 146 65.8
BcaC07g36846 Brassica carinata HOM05D006500 ORTHO05D008028 2.9e-53 212.2 146 65.8
C08p02210 Brassica napus HOM05D006500 ORTHO05D008028 2.9e-53 212.2 146 65.8
A08p36310 Brassica napus HOM05D006500 ORTHO05D008028 8.3e-53 210.7 146 66.4
Zm00001eb144900 Zea mays HOM05D006500 ORTHO05D008028 8.3e-53 210.7 133 66.9
unitig_46.g18636 Utricularia gibba HOM05D006500 ORTHO05D008028 1.1e-52 210.3 151 66.2
Os01g0894500 Oryza sativa ssp. japonica HOM05D006500 ORTHO05D008028 1.4e-52 209.9 135 64.4
FAN07G0402 Fragaria x ananassa HOM05D006500 ORTHO05D008028 3.0e-50 202.2 181 54.7
FAN12G1276 Fragaria x ananassa HOM05D006500 ORTHO05D008028 3.0e-50 202.2 190 52.1
FAN22G1805 Fragaria x ananassa HOM05D006500 ORTHO05D008028 3.0e-50 202.2 181 53.6
Aa31LG1G8630 Aethionema arabicum HOM05D006500 ORTHO05D008028 1.9e-49 199.5 168 56.0
PGR083G1262 Punica granatum HOM05D006500 ORTHO05D008028 1.9e-49 199.5 156 61.5
Pp3c14_2450 Physcomitrium patens HOM05D006500 ORTHO05D008028 1.3e-45 186.8 152 55.3
Lj3A158T10 Lonicera japonica HOM05D006500 ORTHO05D008028 1.7e-45 186.4 113 74.3
MBI08_g33171_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 1.1e-44 183.7 102 82.4
SMO119G0117 Selaginella moellendorffii HOM05D006500 ORTHO05D008028 2.7e-43 179.1 142 54.2
Haze_01362 Corylus avellana HOM05D006500 ORTHO05D008028 6.2e-40 167.9 156 55.1
TPR.G23526 Trifolium pratense HOM05D006500 ORTHO05D008028 2.4e-39 166.0 97 76.3
BcaC07g42121 Brassica carinata HOM05D006500 ORTHO05D008028 7.6e-38 161.0 138 54.3
Nn1g09666 Nelumbo nucifera HOM05D006500 ORTHO05D008028 4.2e-28 128.6 83 67.5
SHI33478 Sapria himalayana HOM05D000105 ORTHO05D000023 5.8e-22 108.2 86 58.1
Ciclev10023175m.g Citrus clementina HOM05D006500 ORTHO05D008028 1.8e-18 96.7 73 58.9
Cre01.g038950 Chlamydomonas reinhardtii HOM05D006500 ORTHO05D008028 1.6e-16 90.1 152 35.5
CBR_g27901 Chara braunii HOM05D006500 ORTHO05D008028 1.3e-13 80.5 131 35.9
CAN.G701.5 Capsicum annuum HOM05D006500 ORTHO05D008028 8.4e-13 77.8 77 49.4
MBI08_g33170_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 2.6e-06 56.2 56 53.6


User provided reference genes

Program Settings