Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 0.0e+00 1198.3 618 100.0
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 8.3e-226 787.3 599 68.8
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 1.0e-223 780.4 600 67.7
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.1e-222 776.9 629 66.6
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 6.2e-221 771.2 596 68.3
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 2.2e-218 762.7 607 66.1
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 3.8e-218 761.9 617 66.1
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 8.4e-218 760.8 620 65.8
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 1.1e-217 760.4 602 67.6
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 1.9e-217 759.6 596 68.1
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 2.4e-217 759.2 615 66.2
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 2.4e-217 759.2 603 66.7
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 3.2e-217 758.8 598 66.9
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 9.2e-217 757.3 637 64.5
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 2.7e-216 755.7 597 66.8
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 2.7e-216 755.7 621 65.2
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 4.6e-216 755.0 584 68.2
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 6.0e-216 754.6 629 64.9
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 1.3e-215 753.4 630 64.4
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.3e-215 753.4 611 66.1
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 3.0e-215 752.3 630 64.0
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 3.0e-215 752.3 591 67.7
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 1.1e-214 750.4 634 64.2
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 1.1e-214 750.4 573 67.9
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 5.6e-214 748.0 584 67.5
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 7.3e-214 747.7 586 66.4
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 9.6e-214 747.3 581 68.2
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 1.6e-213 746.5 584 67.5
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 2.1e-213 746.1 588 67.9
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 2.1e-213 746.1 573 67.7
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 3.6e-213 745.3 573 68.1
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 4.7e-213 745.0 602 66.1
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 6.2e-213 744.6 573 67.9
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 1.8e-212 743.0 574 68.6
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 2.4e-212 742.7 573 67.5
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 3.1e-212 742.3 586 66.0
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 3.1e-212 742.3 596 65.9
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 4.0e-212 741.9 573 67.9
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 5.2e-212 741.5 610 65.2
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 5.2e-212 741.5 639 64.0
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 6.9e-212 741.1 599 65.1
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 6.9e-212 741.1 630 63.3
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 6.9e-212 741.1 606 65.2
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 9.0e-212 740.7 639 63.8
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 1.2e-211 740.3 599 65.1
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.2e-211 740.3 610 65.6
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 1.2e-211 740.3 606 65.8
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 1.5e-211 740.0 594 66.3
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 2.6e-211 739.2 596 65.4
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.4e-211 738.8 573 66.7
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 3.4e-211 738.8 571 68.0
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 5.8e-211 738.0 586 65.7
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 7.6e-211 737.6 611 65.0
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 9.9e-211 737.3 625 63.5
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.7e-210 736.5 621 64.1
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 2.2e-210 736.1 593 65.3
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.9e-210 735.7 611 65.3
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 3.8e-210 735.3 591 66.3
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 4.9e-210 734.9 573 67.0
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 4.9e-210 734.9 621 63.9
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 6.4e-210 734.6 623 63.6
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 6.4e-210 734.6 597 64.7
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 8.4e-210 734.2 602 64.1
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 1.1e-209 733.8 625 63.2
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 1.4e-209 733.4 571 67.6
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.9e-209 733.0 584 67.0
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 1.9e-209 733.0 602 64.1
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 2.4e-209 732.6 619 63.8
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 3.2e-209 732.3 621 63.3
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 4.2e-209 731.9 571 67.6
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 7.1e-209 731.1 603 64.5
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 1.2e-208 730.3 634 62.3
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 1.6e-208 729.9 562 68.3
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 1.6e-208 729.9 605 65.1
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.6e-208 729.9 625 63.4
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 2.7e-208 729.2 571 66.5
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 3.5e-208 728.8 599 64.1
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 7.8e-208 727.6 596 65.3
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.0e-207 727.2 590 66.1
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 1.3e-207 726.9 620 64.4
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 3.0e-207 725.7 597 64.2
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 3.9e-207 725.3 591 65.8
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 6.6e-207 724.5 632 62.3
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 1.9e-206 723.0 586 65.0
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 5.6e-206 721.5 526 71.1
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 1.3e-205 720.3 591 65.7
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 1.3e-205 720.3 639 63.1
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 2.1e-205 719.5 576 67.4
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 6.2e-205 718.0 586 64.2
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 1.1e-204 717.2 599 63.4
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 1.1e-204 717.2 599 63.4
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 1.4e-204 716.8 617 63.5
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 1.4e-204 716.8 615 63.4
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 6.9e-204 714.5 606 64.2
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 1.5e-203 713.4 575 65.6
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 2.0e-203 713.0 638 62.4
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 3.4e-203 712.2 588 65.1
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 5.8e-203 711.4 616 62.7
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 7.6e-203 711.1 575 65.6
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 7.6e-203 711.1 572 65.9
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 6.4e-202 708.0 598 64.9
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 3.2e-201 705.7 584 65.1
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 5.4e-201 704.9 616 62.8
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 5.4e-201 704.9 547 66.7
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 1.6e-200 703.4 645 59.7
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 1.6e-200 703.4 523 68.6
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 2.1e-200 703.0 521 69.3
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 6.0e-200 701.4 571 64.4
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.8e-199 699.9 519 70.3
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 6.7e-199 698.0 576 63.2
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 4.3e-198 695.3 595 61.7
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 9.6e-198 694.1 565 65.7
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 6.2e-197 691.4 629 59.9
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.4e-196 690.3 593 62.7
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 2.6e-195 686.0 589 62.0
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 2.2e-194 682.9 531 68.7
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 1.9e-193 679.9 525 67.2
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 9.3e-193 677.6 535 66.0
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.5e-192 675.6 537 65.5
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 6.0e-192 674.9 524 66.8
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 6.0e-192 674.9 524 66.8
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 3.0e-191 672.5 621 58.9
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.3e-188 661.8 549 63.0
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 2.0e-187 659.8 527 63.8
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 3.4e-187 659.1 607 57.8
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 5.8e-187 658.3 583 61.7
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.0e-186 657.5 599 61.4
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 1.9e-185 653.3 576 63.9
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 4.6e-184 648.7 583 59.2
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 1.8e-183 646.7 611 59.6
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 2.2e-181 639.8 570 61.8
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 2.8e-181 639.4 557 62.7
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 3.7e-181 639.0 515 65.8
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 1.1e-180 637.5 495 67.3
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 1.4e-180 637.1 626 57.0
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 3.4e-179 632.5 573 60.2
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 1.3e-178 630.6 542 63.5
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 4.1e-172 609.0 537 60.3
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 3.8e-170 602.4 607 56.8
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 3.7e-165 585.9 419 71.4
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 3.2e-161 572.8 603 55.6
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 9.4e-161 571.2 415 70.6
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.4e-159 567.4 408 69.9
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 5.7e-158 562.0 413 70.9
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 2.4e-156 556.6 566 53.2
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 3.5e-155 552.7 465 65.8
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 4.7e-144 515.8 479 57.2
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 1.1e-137 494.6 382 67.0
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 1.6e-128 464.2 527 51.4
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 1.7e-122 444.1 365 65.8
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 5.2e-119 432.6 458 53.7
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 2.5e-113 413.7 319 68.0
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 5.1e-98 362.8 289 65.4
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 2.2e-69 267.7 157 86.0
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 1.1e-55 222.2 142 79.6
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 2.6e-38 164.5 166 53.0
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 7.7e-38 162.9 166 51.8
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 1.7e-37 161.8 155 52.9
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 1.1e-36 159.1 155 52.3
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 8.0e-35 152.9 131 61.1
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 5.4e-23 113.6 96 61.5
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.3e-21 109.0 93 60.2
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 1.6e-19 102.1 60 85.0
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 2.8e-19 101.3 115 52.2
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 8.0e-19 99.8 98 54.1
CBR_g40501 Chara braunii HOM05D004038 ORTHO05D004619 8.9e-18 96.3 131 38.9
Pp3c1_34260 Physcomitrium patens HOM05D004038 ORTHO05D004619 5.7e-17 93.6 312 27.2
Pp3c10_11360 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.5e-14 84.3 144 34.7
Pp3c14_7650 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.5e-14 84.3 202 32.7
Pp3c1_7290 Physcomitrium patens HOM05D004038 ORTHO05D004619 7.8e-14 83.2 194 36.1
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 4.4e-09 67.4 68 55.9
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 7.8e-06 56.6 60 53.3


User provided reference genes

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