Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 0.0e+00 1260.0 629 100.0
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 3.3e-222 775.4 634 62.5
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 9.7e-222 773.9 631 61.0
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 1.1e-212 743.8 633 59.4
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 7.7e-211 737.6 634 58.2
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 5.7e-206 721.5 631 57.7
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 3.7e-205 718.8 639 58.1
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 1.8e-204 716.5 633 57.3
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 4.1e-204 715.3 632 57.0
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 5.4e-204 714.9 632 56.3
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 7.0e-204 714.5 635 56.9
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 9.1e-204 714.1 636 56.8
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 9.1e-204 714.1 634 56.8
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 1.6e-203 713.4 635 56.7
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 4.7e-200 701.8 667 54.9
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 6.8e-199 698.0 632 56.3
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 8.8e-199 697.6 670 53.3
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 4.4e-198 695.3 637 55.6
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 8.3e-197 691.0 634 55.0
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 1.4e-196 690.3 633 55.3
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 1.4e-196 690.3 633 54.8
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 5.4e-196 688.3 634 55.7
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 9.2e-196 687.6 632 55.1
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 5.9e-195 684.9 638 55.0
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.3e-194 683.7 634 55.4
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 2.3e-194 682.9 633 55.5
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 4.3e-193 678.7 639 54.0
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 9.5e-193 677.6 640 54.5
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 1.6e-192 676.8 636 54.2
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 4.7e-192 675.2 651 52.5
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 1.8e-191 673.3 638 53.4
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 1.8e-191 673.3 632 53.8
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 8.9e-191 671.0 646 54.0
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 8.9e-191 671.0 666 51.8
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 8.9e-191 671.0 666 51.8
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 2.0e-190 669.8 635 54.2
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 4.4e-190 668.7 640 53.9
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 4.4e-190 668.7 632 53.6
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 7.5e-190 667.9 615 55.1
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.7e-189 666.8 662 51.8
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 2.9e-189 666.0 632 53.5
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 4.9e-189 665.2 635 53.9
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 7.0e-188 661.4 633 54.0
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 2.7e-187 659.4 635 52.4
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 5.9e-187 658.3 636 53.8
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 7.8e-187 657.9 634 53.9
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 1.0e-186 657.5 631 53.1
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 1.3e-186 657.1 639 53.2
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 1.7e-186 656.8 635 52.4
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 3.0e-186 656.0 635 54.3
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 8.6e-186 654.4 639 53.5
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 1.1e-185 654.1 632 53.6
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 1.9e-185 653.3 632 53.0
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 2.5e-185 652.9 639 53.4
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 5.6e-185 651.7 635 51.8
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 1.6e-184 650.2 644 52.8
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 2.8e-184 649.4 639 53.5
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 3.1e-183 646.0 635 52.3
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 4.0e-183 645.6 632 53.3
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 4.0e-183 645.6 640 52.0
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 4.0e-183 645.6 633 52.1
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 1.2e-182 644.0 632 53.2
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 7.5e-182 641.3 633 52.9
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 8.3e-181 637.9 639 52.3
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 1.9e-180 636.7 640 52.7
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 5.4e-180 635.2 633 52.1
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 7.0e-180 634.8 633 51.3
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 7.0e-180 634.8 635 52.4
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 9.2e-180 634.4 636 52.4
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 1.2e-179 634.0 637 50.5
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 2.7e-179 632.9 634 51.9
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 6.0e-179 631.7 632 51.3
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 6.0e-179 631.7 634 51.9
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 7.8e-179 631.3 634 52.5
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 1.0e-178 630.9 634 51.7
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 1.3e-178 630.6 632 50.0
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 2.3e-178 629.8 634 51.6
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 5.0e-178 628.6 633 52.9
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 6.6e-178 628.2 632 51.6
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 8.6e-178 627.9 703 48.9
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 1.5e-177 627.1 633 51.8
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 2.5e-177 626.3 639 52.1
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 2.1e-176 623.2 636 52.0
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 2.6e-174 616.3 633 51.0
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 1.7e-173 613.6 632 49.8
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 1.9e-172 610.1 640 51.2
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 4.1e-172 609.0 632 50.6
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 1.3e-170 604.0 633 50.1
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 3.9e-170 602.4 634 50.0
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 6.6e-170 601.7 696 47.4
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 1.5e-169 600.5 670 48.7
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 5.6e-169 598.6 632 49.2
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 7.3e-169 598.2 638 51.9
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 9.5e-169 597.8 634 49.1
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 8.1e-168 594.7 584 52.9
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 1.3e-162 577.4 634 47.6
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 3.0e-162 576.2 590 51.5
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 5.6e-161 572.0 633 49.3
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 2.1e-160 570.1 537 54.2
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 1.7e-157 560.5 537 55.1
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 1.9e-153 547.0 633 47.9
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 4.0e-151 539.3 659 45.1
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 5.8e-150 535.4 539 54.2
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 1.1e-148 531.2 636 42.9
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 2.6e-142 510.0 404 61.9
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 2.3e-138 496.9 622 43.1
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 3.9e-138 496.1 632 44.5
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 8.7e-138 495.0 625 44.6
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 1.6e-136 490.7 387 62.3
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 2.4e-135 486.9 495 52.7
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 2.2e-133 480.3 631 44.1
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 3.4e-126 456.4 592 42.1
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 3.6e-123 446.4 519 46.1
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.1e-95 355.1 405 46.7
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 2.2e-93 347.4 749 30.3
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.6e-91 341.3 408 45.1
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 5.2e-74 283.1 625 31.2
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 1.1e-66 258.8 668 31.6
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 6.6e-61 239.6 248 47.6
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 1.9e-55 221.5 377 36.9
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 2.4e-50 204.5 270 40.7
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 2.9e-48 197.6 164 61.0
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 6.2e-43 179.9 232 46.1
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 6.9e-42 176.4 128 65.6
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.7e-40 171.8 131 61.8
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 9.6e-36 156.0 654 23.4
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 3.3e-28 131.0 119 51.3
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 5.6e-28 130.2 152 48.7
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 2.1e-27 128.3 95 66.3
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 2.8e-27 127.9 134 47.8
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 1.3e-24 119.0 163 42.3
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 6.7e-21 106.7 143 42.0
unitig_35.g30204 Utricularia gibba HOM05D005422 ORTHO05D006578 2.2e-16 91.7 115 42.6
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 1.1e-15 89.4 80 58.8
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 8.7e-13 79.7 77 50.6
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 3.3e-12 77.8 120 38.3
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 7.4e-12 76.6 69 47.8
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 9.7e-12 76.3 246 28.0
MBI10_g35396_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 1.4e-10 72.4 51 66.7
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 5.3e-10 70.5 69 44.9
arahy.Tifrunner.gnm1.ann1.L1WA2E Arachis hypogaea HOM05D001562 ORTHO05D001437 6.9e-10 70.1 64 57.8
Lsat_1_v5_gn_3_78701 Lactuca sativa HOM05D005422 ORTHO05D006578 1.5e-09 68.9 71 43.7
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 2.9e-08 64.7 54 48.1
arahy.Tifrunner.gnm1.ann1.E05V9C Arachis hypogaea HOM05D000386 ORTHO05D083937 1.4e-07 62.4 73 47.9
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 5.5e-07 60.5 52 55.8
Potri.008G178951 Populus trichocarpa HOM05D005422 ORTHO05D006578 7.2e-07 60.1 132 31.1


User provided reference genes

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