Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0743G029 Amborella trichopoda HOM05D000543 ORTHO05D000396 1.5e-24 115.9 85 100.0
ATR0743G228 Amborella trichopoda HOM05D000543 ORTHO05D000396 9.0e-14 80.1 80 56.2
Nn6g33317 Nelumbo nucifera HOM05D000543 ORTHO05D000396 2.3e-09 65.5 80 45.0
TAR633G2697 Trochodendron aralioides HOM05D000543 ORTHO05D000396 3.9e-09 64.7 39 74.4
Nitab4.5_0001003g0140 Nicotiana tabacum HOM05D000543 ORTHO05D000396 5.1e-09 64.3 39 69.2
TAR362G0270 Trochodendron aralioides HOM05D000543 ORTHO05D000396 6.7e-09 63.9 80 43.8
EL10Ac6g13314 Beta vulgaris HOM05D000543 ORTHO05D000396 1.5e-08 62.8 39 74.4
CiPaw.07G085100 Carya illinoinensis HOM05D000543 ORTHO05D000396 1.9e-08 62.4 39 69.2
TAR633G0836 Trochodendron aralioides HOM05D000543 ORTHO05D000396 1.9e-08 62.4 39 71.8
Nitab4.5_0000971g0160 Nicotiana tabacum HOM05D000543 ORTHO05D000396 2.5e-08 62.0 39 66.7
Nitab4.5_0010534g0010 Nicotiana tabacum HOM05D000543 ORTHO05D000396 2.5e-08 62.0 39 66.7
Peaxi162Scf00658g00029 Petunia axillaris HOM05D000543 ORTHO05D000396 2.5e-08 62.0 39 66.7
Potri.010G179700 Populus trichocarpa HOM05D000543 ORTHO05D000396 2.5e-08 62.0 39 71.8
Potri.010G179801 Populus trichocarpa HOM05D000543 ORTHO05D000396 2.5e-08 62.0 39 71.8
THA.LOC104823817 Tarenaya hassleriana HOM05D000543 ORTHO05D000396 2.5e-08 62.0 39 66.7
QL01p051503 Quercus lobata HOM05D000543 ORTHO05D000396 3.3e-08 61.6 39 69.2
FAN02G3270 Fragaria x ananassa HOM05D000543 ORTHO05D000396 4.3e-08 61.2 39 71.8
Nitab4.5_0006714g0010 Nicotiana tabacum HOM05D000543 ORTHO05D000396 4.3e-08 61.2 40 65.0
Sabra08G0057800 Salix brachista HOM05D000543 ORTHO05D000396 4.3e-08 61.2 39 69.2
Nitab4.5_0008012g0020 Nicotiana tabacum HOM05D000543 ORTHO05D000396 5.7e-08 60.8 39 61.5
Nitab4.5_0011525g0020 Nicotiana tabacum HOM05D000543 ORTHO05D000396 5.7e-08 60.8 39 64.1
Peaxi162Scf00254g00117 Petunia axillaris HOM05D000543 ORTHO05D000396 5.7e-08 60.8 39 64.1
Potri.010G179900 Populus trichocarpa HOM05D000543 ORTHO05D000396 5.7e-08 60.8 39 69.2
arahy.Tifrunner.gnm1.ann1.E8V3SA Arachis hypogaea HOM05D000543 ORTHO05D000396 7.4e-08 60.5 42 61.9
CSS0021366 Camellia sinensis var. sinensis HOM05D000543 ORTHO05D000396 7.4e-08 60.5 39 69.2
Cpa.g.c32595 Carica papaya HOM05D000543 ORTHO05D000396 7.4e-08 60.5 39 71.8
AUR62000271 Chenopodium quinoa HOM05D000543 ORTHO05D000396 7.4e-08 60.5 39 64.1
MBI08_g18566_MAGBIO Magnolia biondii HOM05D000543 ORTHO05D000396 7.4e-08 60.5 39 66.7
Nn1g09747 Nelumbo nucifera HOM05D000543 ORTHO05D000396 7.4e-08 60.5 39 66.7
Actinidia03239 Actinidia chinensis HOM05D000543 ORTHO05D000396 9.7e-08 60.1 39 66.7
arahy.Tifrunner.gnm1.ann1.5H2LSK Arachis hypogaea HOM05D000543 ORTHO05D000396 9.7e-08 60.1 42 61.9
arahy.Tifrunner.gnm1.ann1.9X2P9A Arachis hypogaea HOM05D000543 ORTHO05D000396 9.7e-08 60.1 42 61.9
Dinv17128 Davidia involucrata HOM05D000543 ORTHO05D000396 9.7e-08 60.1 39 66.7
Manes.12G001600 Manihot esculenta HOM05D000543 ORTHO05D000396 9.7e-08 60.1 40 67.5
Nn1g09772 Nelumbo nucifera HOM05D000543 ORTHO05D000396 9.7e-08 60.1 39 69.2
Nitab4.5_0008339g0030 Nicotiana tabacum HOM05D000543 ORTHO05D000396 9.7e-08 60.1 39 69.2
Peaxi162Scf00253g00619 Petunia axillaris HOM05D000543 ORTHO05D000396 9.7e-08 60.1 39 66.7
Lalb_Chr02g0156991 Lupinus albus HOM05D000543 ORTHO05D000396 1.3e-07 59.7 39 66.7
PSO675G8559 Papaver somniferum HOM05D000543 ORTHO05D000396 1.3e-07 59.7 39 61.5
PGSC0003DMG400016180 Solanum tuberosum HOM05D000543 ORTHO05D000396 1.3e-07 59.7 38 63.2
SGA_v2.0_scaffold122G33207 Striga asiatica HOM05D000543 ORTHO05D000396 1.3e-07 59.7 39 66.7
Solyc11g008640.1 Solanum lycopersicum HOM05D000543 ORTHO05D000396 1.7e-07 59.3 39 59.0
Sopen11g004430 Solanum pennellii HOM05D000543 ORTHO05D000396 1.7e-07 59.3 39 59.0
Aa31LG2G2490 Aethionema arabicum HOM05D000543 ORTHO05D000396 2.2e-07 58.9 39 61.5
DCAR_023904 Daucus carota HOM05D000543 ORTHO05D000396 2.2e-07 58.9 39 66.7
Eucgr.B01458 Eucalyptus grandis HOM05D000543 ORTHO05D000396 2.2e-07 58.9 39 66.7
Nitab4.5_0000351g0250 Nicotiana tabacum HOM05D000543 ORTHO05D000396 2.2e-07 58.9 40 65.0
Nitab4.5_0000751g0180 Nicotiana tabacum HOM05D000543 ORTHO05D000396 2.2e-07 58.9 39 66.7
HPP92_008989 Vanilla planifolia HOM05D000543 ORTHO05D000396 2.2e-07 58.9 39 61.5
HPP92_008998 Vanilla planifolia HOM05D000543 ORTHO05D000396 2.2e-07 58.9 39 61.5
Aqoxy1G03918 Aquilegia oxysepala HOM05D000543 ORTHO05D000396 2.8e-07 58.5 39 64.1
arahy.Tifrunner.gnm1.ann1.IZ8FG5 Arachis hypogaea HOM05D000543 ORTHO05D000396 2.8e-07 58.5 39 61.5
CAN.G321.9 Capsicum annuum HOM05D000543 ORTHO05D000396 2.8e-07 58.5 39 59.0
FAN09G2612 Fragaria x ananassa HOM05D000543 ORTHO05D000396 2.8e-07 58.5 39 66.7
Nitab4.5_0000819g0010 Nicotiana tabacum HOM05D000543 ORTHO05D000396 2.8e-07 58.5 39 64.1
Potri.008G077700 Populus trichocarpa HOM05D000543 ORTHO05D000396 2.8e-07 58.5 39 64.1
Sabra10G0137900 Salix brachista HOM05D000543 ORTHO05D000396 2.8e-07 58.5 39 69.2
Sed0000265 Sechium edule HOM05D000543 ORTHO05D000396 2.8e-07 58.5 39 61.5
arahy.Tifrunner.gnm1.ann1.FW8Z6T Arachis hypogaea HOM05D000543 ORTHO05D000396 3.7e-07 58.2 42 59.5
FvH4_6g00090 Fragaria vesca HOM05D000543 ORTHO05D000396 3.7e-07 58.2 39 66.7
FAN14G0022 Fragaria x ananassa HOM05D000543 ORTHO05D000396 3.7e-07 58.2 39 66.7
MD12G1262000 Malus domestica HOM05D000543 ORTHO05D000396 3.7e-07 58.2 39 64.1
SalBow3G0168 Salvia bowleyana HOM05D000543 ORTHO05D000396 3.7e-07 58.2 39 64.1
Sc06g0004920 Simmondsia chinensis HOM05D000543 ORTHO05D000396 3.7e-07 58.2 39 66.7
Sc16g0010630 Simmondsia chinensis HOM05D000543 ORTHO05D000396 3.7e-07 58.2 39 64.1
vmacro19616 Vaccinium macrocarpon HOM05D000543 ORTHO05D000396 3.7e-07 58.2 39 64.1
Aqoxy2G04117 Aquilegia oxysepala HOM05D000543 ORTHO05D000396 4.8e-07 57.8 39 64.1
AT1G65480 Arabidopsis thaliana HOM05D000543 ORTHO05D000396 4.8e-07 57.8 39 64.1
CAN.G694.30 Capsicum annuum HOM05D000543 ORTHO05D000396 4.8e-07 57.8 39 64.1
AUR62006619 Chenopodium quinoa HOM05D000543 ORTHO05D000396 4.8e-07 57.8 39 64.1
Migut.F01843 Erythranthe guttata HOM05D000543 ORTHO05D000396 4.8e-07 57.8 39 61.5
Lsat_1_v5_gn_2_17881 Lactuca sativa HOM05D000543 ORTHO05D000396 4.8e-07 57.8 39 64.1
PSO017G7122 Papaver somniferum HOM05D000543 ORTHO05D000396 4.8e-07 57.8 39 59.0
Actinidia40008 Actinidia chinensis HOM05D000543 ORTHO05D000396 6.3e-07 57.4 39 64.1
CiPaw.07G085000 Carya illinoinensis HOM05D000543 ORTHO05D000396 6.3e-07 57.4 39 59.0
CDE04G1323 Ceratophyllum demersum HOM05D000543 ORTHO05D000396 6.3e-07 57.4 39 64.1
CDE04G2275 Ceratophyllum demersum HOM05D000543 ORTHO05D000396 6.3e-07 57.4 39 64.1
AUR62033889 Chenopodium quinoa HOM05D000543 ORTHO05D000396 6.3e-07 57.4 39 61.5
COL.COLO4_32094 Corchorus olitorius HOM05D000543 ORTHO05D000396 6.3e-07 57.4 39 64.1
MELO3C010015.2 Cucumis melo HOM05D000543 ORTHO05D000396 6.3e-07 57.4 39 59.0
CsaV3_1G044210 Cucumis sativus L. HOM05D000543 ORTHO05D000396 6.3e-07 57.4 39 59.0
HanXRQChr08g0234381 Helianthus annuus HOM05D000543 ORTHO05D000396 6.3e-07 57.4 39 66.7
Nitab4.5_0001003g0220 Nicotiana tabacum HOM05D000543 ORTHO05D000396 6.3e-07 57.4 39 59.0
PSO017G7013 Papaver somniferum HOM05D000543 ORTHO05D000396 6.3e-07 57.4 39 61.5
Prupe.6G364900 Prunus persica HOM05D000543 ORTHO05D000396 6.3e-07 57.4 39 64.1
Actinidia31351 Actinidia chinensis HOM05D000543 ORTHO05D000396 8.2e-07 57.0 86 40.7
CDE07G0153 Ceratophyllum demersum HOM05D000543 ORTHO05D000396 8.2e-07 57.0 39 64.1
CDE07G1490 Ceratophyllum demersum HOM05D000543 ORTHO05D000396 8.2e-07 57.0 39 64.1
Lj1A582G6 Lonicera japonica HOM05D000543 ORTHO05D000396 8.2e-07 57.0 39 61.5
Nitab4.5_0008339g0010 Nicotiana tabacum HOM05D000543 ORTHO05D000396 8.2e-07 57.0 39 61.5
Peaxi162Scf00254g00104 Petunia axillaris HOM05D000543 ORTHO05D000396 8.2e-07 57.0 39 61.5
Solyc03g063100.2 Solanum lycopersicum HOM05D000543 ORTHO05D000396 8.2e-07 57.0 39 59.0
Sopen03g015390 Solanum pennellii HOM05D000543 ORTHO05D000396 8.2e-07 57.0 39 59.0
PGSC0003DMG400023365 Solanum tuberosum HOM05D000543 ORTHO05D000396 8.2e-07 57.0 39 64.1
EL10Ac4g10025 Beta vulgaris HOM05D000543 ORTHO05D000396 1.1e-06 56.6 39 61.5
Dinv29077 Davidia involucrata HOM05D000543 ORTHO05D000396 1.1e-06 56.6 39 61.5
HanXRQChr11g0351631 Helianthus annuus HOM05D000543 ORTHO05D000396 1.1e-06 56.6 39 61.5
Os04g0488400 Oryza sativa ssp. japonica HOM05D000543 ORTHO05D000396 1.1e-06 56.6 39 56.4
PSO675G5719 Papaver somniferum HOM05D000543 ORTHO05D000396 1.1e-06 56.6 39 61.5
RcHm_v2.0_Chr3g0447431 Rosa chinensis HOM05D000543 ORTHO05D000396 1.1e-06 56.6 39 66.7
Solyc05g055660.3 Solanum lycopersicum HOM05D000543 ORTHO05D000396 1.1e-06 56.6 39 64.1
Sopen05g034090 Solanum pennellii HOM05D000543 ORTHO05D000396 1.1e-06 56.6 39 64.1
Thecc.05G111400 Theobroma cacao HOM05D000543 ORTHO05D000396 1.1e-06 56.6 39 64.1
TPR.G5891 Trifolium pratense HOM05D000543 ORTHO05D000396 1.1e-06 56.6 39 56.4
Actinidia09079 Actinidia chinensis HOM05D000543 ORTHO05D000396 1.4e-06 56.2 43 55.8
Carub.0002s1121 Capsella rubella HOM05D000543 ORTHO05D000396 1.4e-06 56.2 39 61.5
CARHR057150 Cardamine hirsuta HOM05D000543 ORTHO05D000396 1.4e-06 56.2 39 61.5
AUR62026433 Chenopodium quinoa HOM05D000543 ORTHO05D000396 1.4e-06 56.2 38 65.8
Glyma.16G150700 Glycine max HOM05D000543 ORTHO05D000396 1.4e-06 56.2 39 61.5
HanXRQChr13g0399101 Helianthus annuus HOM05D000543 ORTHO05D000396 1.4e-06 56.2 39 59.0
Nn019s41475 Nelumbo nucifera HOM05D000543 ORTHO05D000396 1.4e-06 56.2 39 61.5
Nn1g07976 Nelumbo nucifera HOM05D000543 ORTHO05D000396 1.4e-06 56.2 39 61.5
PGR031G0946 Punica granatum HOM05D000543 ORTHO05D000396 1.4e-06 56.2 39 59.0
Thecc.03G052300 Theobroma cacao HOM05D000543 ORTHO05D000396 1.4e-06 56.2 39 61.5
Ah.04g159300 Amaranthus hybridus HOM05D000543 ORTHO05D000396 1.8e-06 55.8 39 64.1
AL2G22180 Arabidopsis lyrata HOM05D000543 ORTHO05D000396 1.8e-06 55.8 39 59.0
MSTRG.27412 Avicennia marina HOM05D000543 ORTHO05D000396 1.8e-06 55.8 39 64.1
MSTRG.339 Avicennia marina HOM05D000543 ORTHO05D000396 1.8e-06 55.8 80 40.0
ClCG03G010250 Citrullus lanatus HOM05D000543 ORTHO05D000396 1.8e-06 55.8 39 59.0
Cc00_g15660 Coffea canephora HOM05D000543 ORTHO05D000396 1.8e-06 55.8 39 64.1
Hma1.2p1_0620F.1_g190510 Hydrangea macrophylla HOM05D000543 ORTHO05D000396 1.8e-06 55.8 39 61.5
Hma1.2p1_0620F.1_g190515 Hydrangea macrophylla HOM05D000543 ORTHO05D000396 1.8e-06 55.8 39 61.5
Lj2g0022162 Lotus japonicus HOM05D000543 ORTHO05D000396 1.8e-06 55.8 39 61.5
Manes.13G000800 Manihot esculenta HOM05D000543 ORTHO05D000396 1.8e-06 55.8 40 62.5
Zm00001eb271180 Zea mays HOM05D000543 ORTHO05D000396 1.8e-06 55.8 39 61.5
Duzib177G0390 Durio zibethinus HOM05D000543 ORTHO05D000396 2.4e-06 55.5 39 64.1
Glyma.02G069200 Glycine max HOM05D000543 ORTHO05D000396 2.4e-06 55.5 39 61.5
Lj1g0012964 Lotus japonicus HOM05D000543 ORTHO05D000396 2.4e-06 55.5 39 64.1
Nn1g03294 Nelumbo nucifera HOM05D000543 ORTHO05D000396 2.4e-06 55.5 39 61.5
Nn1g07986 Nelumbo nucifera HOM05D000543 ORTHO05D000396 2.4e-06 55.5 80 40.0
PSO050G0002 Papaver somniferum HOM05D000543 ORTHO05D000396 2.4e-06 55.5 39 59.0
CANSAT35G0875 Cannabis sativa HOM05D000543 ORTHO05D000396 3.1e-06 55.1 39 64.1
Duzib068G1406 Durio zibethinus HOM05D000543 ORTHO05D000396 3.1e-06 55.1 39 59.0
THA.LOC104821993 Tarenaya hassleriana HOM05D000543 ORTHO05D000396 3.1e-06 55.1 39 61.5
TWI18G0924 Tripterygium wilfordii HOM05D000543 ORTHO05D000396 3.1e-06 55.1 40 62.5
Cfa006220 Carpinus fangiana HOM05D000543 ORTHO05D000396 4.1e-06 54.7 40 62.5
Cc10_g08600 Coffea canephora HOM05D000543 ORTHO05D000396 4.1e-06 54.7 39 61.5
Haze_04607 Corylus avellana HOM05D000543 ORTHO05D000396 4.1e-06 54.7 40 62.5
Glyma.16G151000 Glycine max HOM05D000543 ORTHO05D000396 4.1e-06 54.7 39 59.0
Peaxi162Scf01324g00006 Petunia axillaris HOM05D000543 ORTHO05D000396 4.1e-06 54.7 39 61.5
Rhsim05G0164200 Rhododendron simsii HOM05D000543 ORTHO05D000396 4.1e-06 54.7 39 56.4
RcHm_v2.0_Chr4g0439111 Rosa chinensis HOM05D000543 ORTHO05D000396 4.1e-06 54.7 40 65.0
TAR629G2399 Trochodendron aralioides HOM05D000543 ORTHO05D000396 4.1e-06 54.7 80 38.8
CDE07G1997 Ceratophyllum demersum HOM05D000543 ORTHO05D000396 5.3e-06 54.3 80 41.2
Gohir.D08G248000 Gossypium hirsutum HOM05D000543 ORTHO05D000396 5.3e-06 54.3 39 61.5
Gorai.004G264600 Gossypium raimondii HOM05D000543 ORTHO05D000396 5.3e-06 54.3 39 61.5
HanXRQChr06g0183481 Helianthus annuus HOM05D000543 ORTHO05D000396 5.3e-06 54.3 39 61.5
Nitab4.5_0018102g0010 Nicotiana tabacum HOM05D000543 ORTHO05D000396 5.3e-06 54.3 39 59.0
Solyc05g053850.3 Solanum lycopersicum HOM05D000543 ORTHO05D000396 5.3e-06 54.3 39 56.4
Sopen05g032320 Solanum pennellii HOM05D000543 ORTHO05D000396 5.3e-06 54.3 39 56.4
PGSC0003DMG400016179 Solanum tuberosum HOM05D000543 ORTHO05D000396 5.3e-06 54.3 39 56.4
TPR.G20910 Trifolium pratense HOM05D000543 ORTHO05D000396 5.3e-06 54.3 39 61.5
VMungo0464G1305 Vigna mungo HOM05D000543 ORTHO05D000396 5.3e-06 54.3 39 59.0
Aqoxy1G03873 Aquilegia oxysepala HOM05D000543 ORTHO05D000396 6.9e-06 53.9 39 64.1
arahy.Tifrunner.gnm1.ann1.EM6VH3 Arachis hypogaea HOM05D000543 ORTHO05D000396 6.9e-06 53.9 39 59.0
ECA238G0395 Erigeron canadensis HOM05D000543 ORTHO05D000396 6.9e-06 53.9 39 61.5
Gohir.A08G227700 Gossypium hirsutum HOM05D000543 ORTHO05D000396 6.9e-06 53.9 39 61.5
Nitab4.5_0003848g0050 Nicotiana tabacum HOM05D000543 ORTHO05D000396 6.9e-06 53.9 40 57.5
PSO308G0001 Papaver somniferum HOM05D000543 ORTHO05D000396 6.9e-06 53.9 39 56.4
Sed0000492 Sechium edule HOM05D000543 ORTHO05D000396 6.9e-06 53.9 39 61.5
Sopen11g004440 Solanum pennellii HOM05D000543 ORTHO05D000396 6.9e-06 53.9 39 56.4
unitig_8.g3872 Utricularia gibba HOM05D000543 ORTHO05D000396 6.9e-06 53.9 39 64.1
arahy.Tifrunner.gnm1.ann1.VQ1Q3Q Arachis hypogaea HOM05D000543 ORTHO05D000396 9.1e-06 53.5 39 56.4
CSS0009521 Camellia sinensis var. sinensis HOM05D000543 ORTHO05D000396 9.1e-06 53.5 39 61.5
CSS0010709 Camellia sinensis var. sinensis HOM05D000543 ORTHO05D000396 9.1e-06 53.5 39 61.5
CSS0013303 Camellia sinensis var. sinensis HOM05D000543 ORTHO05D000396 9.1e-06 53.5 39 61.5
CSS0022933 Camellia sinensis var. sinensis HOM05D000543 ORTHO05D000396 9.1e-06 53.5 43 53.5
ClCG04G010750 Citrullus lanatus HOM05D000543 ORTHO05D000396 9.1e-06 53.5 39 59.0
MELO3C009627.2 Cucumis melo HOM05D000543 ORTHO05D000396 9.1e-06 53.5 39 59.0
CsaV3_3G038840 Cucumis sativus L. HOM05D000543 ORTHO05D000396 9.1e-06 53.5 39 59.0
Nitab4.5_0000161g0090 Nicotiana tabacum HOM05D000543 ORTHO05D000396 9.1e-06 53.5 40 57.5
Oeu034847.1 Olea europaea HOM05D000543 ORTHO05D000396 9.1e-06 53.5 39 59.0
Psat3g090720 Pisum sativum HOM05D000543 ORTHO05D000396 9.1e-06 53.5 39 61.5
TWI75G1383 Tripterygium wilfordii HOM05D000543 ORTHO05D000396 9.1e-06 53.5 40 62.5


User provided reference genes

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