Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0743G013 Amborella trichopoda HOM05D002444 ORTHO05D009235 5.3e-171 605.5 511 100.0
MBI06_g47069_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 7.1e-51 206.5 193 54.4
Nn3g21650 Nelumbo nucifera HOM05D002444 ORTHO05D009235 2.5e-48 198.0 187 54.5
RcHm_v2.0_Chr7g0221991 Rosa chinensis HOM05D002444 ORTHO05D009235 1.2e-45 189.1 197 49.7
TAR374G0260 Trochodendron aralioides HOM05D002444 ORTHO05D009235 2.0e-45 188.3 200 51.0
CSS0000232 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D009235 2.6e-45 188.0 174 52.9
CiPaw.02G076500 Carya illinoinensis HOM05D002444 ORTHO05D009235 2.6e-45 188.0 178 53.9
Haze_01077 Corylus avellana HOM05D002444 ORTHO05D009235 4.5e-45 187.2 212 48.1
MD00G1073300 Malus domestica HOM05D002444 ORTHO05D009235 5.8e-45 186.8 178 52.2
Duzib151G0185 Durio zibethinus HOM05D002444 ORTHO05D009235 7.6e-45 186.4 177 51.4
Prupe.1G002300 Prunus persica HOM05D002444 ORTHO05D009235 1.3e-44 185.7 206 47.1
THA.LOC104821798 Tarenaya hassleriana HOM05D002444 ORTHO05D009235 8.4e-44 183.0 197 49.2
Rhsim04G0232800 Rhododendron simsii HOM05D002444 ORTHO05D009235 1.4e-43 182.2 187 48.7
Lsat_1_v5_gn_6_19160 Lactuca sativa HOM05D002444 ORTHO05D009235 2.4e-43 181.4 185 48.6
Hma1.2p1_0078F.1_g040150 Hydrangea macrophylla HOM05D002444 ORTHO05D009235 1.6e-42 178.7 207 47.8
QL02p088731 Quercus lobata HOM05D002444 ORTHO05D009235 1.6e-42 178.7 180 51.1
Dinv44313 Davidia involucrata HOM05D002444 ORTHO05D009235 2.1e-42 178.3 171 52.0
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 2.7e-42 177.9 176 50.6
Carub.0003s1662 Capsella rubella HOM05D002444 ORTHO05D009235 2.7e-42 177.9 186 49.5
Cc03_g01100 Coffea canephora HOM05D002444 ORTHO05D009235 3.5e-42 177.6 180 50.0
FAN18G1273 Fragaria x ananassa HOM05D002444 ORTHO05D009235 3.5e-42 177.6 174 50.6
Actinidia40353 Actinidia chinensis HOM05D002444 ORTHO05D009235 4.6e-42 177.2 176 50.6
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 4.6e-42 177.2 176 50.0
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 6.0e-42 176.8 176 50.0
FvH4_5g29230 Fragaria vesca HOM05D002444 ORTHO05D009235 6.0e-42 176.8 174 50.6
MSTRG.3868 Avicennia marina HOM05D002444 ORTHO05D009235 7.9e-42 176.4 175 49.1
unitig_748.g7794 Utricularia gibba HOM05D002444 ORTHO05D009235 1.0e-41 176.0 181 48.6
PGR142G0401 Punica granatum HOM05D002444 ORTHO05D009235 3.9e-41 174.1 174 50.6
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 5.1e-41 173.7 176 48.9
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 5.1e-41 173.7 176 48.9
FAN13G1854 Fragaria x ananassa HOM05D002444 ORTHO05D009235 5.1e-41 173.7 174 49.4
Lj6C687T6 Lonicera japonica HOM05D002444 ORTHO05D009235 5.1e-41 173.7 198 46.0
Sp3g15130 Schrenkiella parvula HOM05D002444 ORTHO05D009235 8.7e-41 172.9 169 50.9
Potri.008G108300 Populus trichocarpa HOM05D002444 ORTHO05D009235 1.1e-40 172.6 171 49.7
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 1.5e-40 172.2 181 47.5
Thhalv10022362m.g Eutrema salsugineum HOM05D002444 ORTHO05D009235 2.5e-40 171.4 170 51.2
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 2.5e-40 171.4 169 50.9
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 4.3e-40 170.6 222 41.0
Nitab4.5_0000169g0070 Nicotiana tabacum HOM05D002444 ORTHO05D009235 5.6e-40 170.2 183 46.4
AL3G29860 Arabidopsis lyrata HOM05D002444 ORTHO05D009235 7.4e-40 169.9 189 47.6
CANSAT01G1305 Cannabis sativa HOM05D002444 ORTHO05D009235 2.1e-39 168.3 175 49.7
Aa31LG8G3960 Aethionema arabicum HOM05D002444 ORTHO05D009235 2.8e-39 167.9 200 45.0
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 2.8e-39 167.9 174 48.3
Cpa.g.sc9.92 Carica papaya HOM05D002444 ORTHO05D009235 3.7e-39 167.5 194 45.9
MELO3C006701.2 Cucumis melo HOM05D002444 ORTHO05D009235 3.7e-39 167.5 180 47.2
SalBow8G2135 Salvia bowleyana HOM05D002444 ORTHO05D009235 4.8e-39 167.2 212 42.9
Nitab4.5_0005333g0010 Nicotiana tabacum HOM05D002444 ORTHO05D009235 6.2e-39 166.8 183 45.9
Thecc.04G296100 Theobroma cacao HOM05D002444 ORTHO05D009235 6.2e-39 166.8 163 50.3
AUR62016141 Chenopodium quinoa HOM05D002444 ORTHO05D009235 8.1e-39 166.4 174 48.3
Gohir.A09G064700 Gossypium hirsutum HOM05D002444 ORTHO05D009235 1.4e-38 165.6 171 48.5
Gorai.006G078600 Gossypium raimondii HOM05D002444 ORTHO05D009235 2.4e-38 164.9 171 48.0
DCAR_023334 Daucus carota HOM05D002444 ORTHO05D009235 3.1e-38 164.5 175 46.9
CAN.G197.15 Capsicum annuum HOM05D002444 ORTHO05D009235 4.0e-38 164.1 183 45.4
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 4.0e-38 164.1 168 48.2
SEGI_18637 Sequoiadendron giganteum HOM05D002444 ORTHO05D009235 9.0e-38 162.9 191 45.0
Glyma.08G268300 Glycine max HOM05D002444 ORTHO05D009235 1.5e-37 162.2 175 46.3
Sopen01g026450 Solanum pennellii HOM05D002444 ORTHO05D009235 1.5e-37 162.2 165 47.3
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 2.0e-37 161.8 139 56.1
Sc13g0006330 Simmondsia chinensis HOM05D002444 ORTHO05D009235 3.4e-37 161.0 184 46.2
PGSC0003DMG401007553 Solanum tuberosum HOM05D002444 ORTHO05D009235 3.4e-37 161.0 175 46.3
CsaV3_3G015050 Cucumis sativus L. HOM05D002444 ORTHO05D009235 4.5e-37 160.6 178 46.1
Oeu019954.2 Olea europaea HOM05D002444 ORTHO05D009235 5.8e-37 160.2 167 47.3
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 2.9e-36 157.9 168 48.8
TWI73G0446 Tripterygium wilfordii HOM05D002444 ORTHO05D009235 2.9e-36 157.9 164 49.4
Manes.03G202100 Manihot esculenta HOM05D002444 ORTHO05D009235 6.5e-36 156.8 160 48.8
arahy.Tifrunner.gnm1.ann1.9AMP7R Arachis hypogaea HOM05D002444 ORTHO05D009235 1.4e-35 155.6 169 43.2
Lj4g0020012 Lotus japonicus HOM05D002444 ORTHO05D009235 1.9e-35 155.2 170 45.3
Lalb_Chr05g0229111 Lupinus albus HOM05D002444 ORTHO05D009235 1.9e-35 155.2 174 44.8
Medtr8g070060 Medicago truncatula HOM05D002444 ORTHO05D009235 1.9e-35 155.2 177 44.1
SHI00166 Sapria himalayana HOM05D002444 ORTHO05D009235 4.2e-35 154.1 163 46.6
FAN04G0068 Fragaria x ananassa HOM05D002444 ORTHO05D009235 9.3e-35 152.9 174 47.1
ATR0697G276 Amborella trichopoda HOM05D002444 ORTHO05D009235 2.7e-34 151.4 76 93.4
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 2.7e-34 151.4 171 43.3
arahy.Tifrunner.gnm1.ann1.48GXQL Arachis hypogaea HOM05D002444 ORTHO05D009235 7.9e-34 149.8 176 42.0
COL.COLO4_29076 Corchorus olitorius HOM05D002444 ORTHO05D009235 7.9e-34 149.8 169 43.8
CARHR092170 Cardamine hirsuta HOM05D002444 ORTHO05D009235 1.8e-33 148.7 137 52.6
Psat4g114600 Pisum sativum HOM05D002444 ORTHO05D009235 2.3e-33 148.3 161 45.3
TPR.G24811 Trifolium pratense HOM05D002444 ORTHO05D009235 3.9e-33 147.5 204 40.7
AUR62016136 Chenopodium quinoa HOM05D000356 ORTHO05D000265 1.9e-32 145.2 123 56.9
Sed0015924 Sechium edule HOM05D002444 ORTHO05D009235 1.9e-32 145.2 202 41.6
VMungo0251G0274 Vigna mungo HOM05D002444 ORTHO05D009235 1.3e-31 142.5 173 43.9
Os12g0557800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D009235 1.0e-28 132.9 181 40.9
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 3.5e-26 124.4 114 51.8
Zm00001eb028360 Zea mays HOM05D002444 ORTHO05D009235 5.1e-25 120.6 147 41.5
Ciclev10006939m.g Citrus clementina HOM05D002444 ORTHO05D009235 6.7e-25 120.2 92 58.7
MBI06_g47128_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 1.5e-24 119.0 191 38.7
AT3G16890 Arabidopsis thaliana HOM05D002444 ORTHO05D009235 1.0e-20 106.3 78 64.1
AUR62043773 Chenopodium quinoa HOM05D002444 ORTHO05D009235 1.0e-20 106.3 67 73.1
COL.COLO4_36843 Corchorus olitorius HOM05D002444 ORTHO05D009235 7.9e-18 96.7 171 33.9
CARHR155470 Cardamine hirsuta HOM05D002444 ORTHO05D009235 3.0e-17 94.7 66 66.7
CDE05G0489 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 1.2e-10 72.8 217 26.3
Lj6C687T3 Lonicera japonica HOM05D002444 ORTHO05D009235 2.1e-10 72.0 50 66.0
Cpa.g.sc71.41 Carica papaya HOM05D007128 ORTHO05D009059 6.7e-09 67.0 174 29.3
Nn7g37484 Nelumbo nucifera HOM05D007202 ORTHO05D009125 1.5e-08 65.9 145 26.2
Sed0021713 Sechium edule HOM05D007128 ORTHO05D009059 3.3e-08 64.7 202 23.8
PSO782G4392 Papaver somniferum HOM05D007202 ORTHO05D009125 5.7e-08 63.9 145 26.9
ATR0561G112 Amborella trichopoda HOM05D006503 ORTHO05D008116 9.7e-08 63.2 128 27.3
Migut.G00097 Erythranthe guttata HOM05D002444 ORTHO05D009235 9.7e-08 63.2 106 31.1
Eucgr.J00877 Eucalyptus grandis HOM05D007202 ORTHO05D009125 2.2e-07 62.0 145 26.2
Aa31LG4G1470 Aethionema arabicum HOM05D006503 ORTHO05D008116 3.7e-07 61.2 145 22.8
PSO063G1738 Papaver somniferum HOM05D007202 ORTHO05D009125 3.7e-07 61.2 223 25.6
Cc01_g05040 Coffea canephora HOM05D007409 ORTHO05D009264 4.8e-07 60.8 136 25.0
GSVIVG01033259001 Vitis vinifera HOM05D006503 ORTHO05D008116 4.8e-07 60.8 144 26.4
Gohir.D02G188900 Gossypium hirsutum HOM05D007202 ORTHO05D009125 6.3e-07 60.5 206 25.2
Gorai.005G211700 Gossypium raimondii HOM05D007202 ORTHO05D009125 6.3e-07 60.5 206 25.2
TWI09G0724 Tripterygium wilfordii HOM05D007409 ORTHO05D009264 6.3e-07 60.5 159 27.0
TAR633G0543 Trochodendron aralioides HOM05D007128 ORTHO05D009059 6.3e-07 60.5 218 23.4
CANSAT80G0799 Cannabis sativa HOM05D005973 ORTHO05D007285 8.2e-07 60.1 198 28.8
CiPaw.01G104100 Carya illinoinensis HOM05D007128 ORTHO05D009059 8.2e-07 60.1 174 25.3
Gohir.A03G165700 Gossypium hirsutum HOM05D007202 ORTHO05D009125 8.2e-07 60.1 206 24.8
QL10p046158 Quercus lobata HOM05D007128 ORTHO05D009059 8.2e-07 60.1 217 24.9
Actinidia21102 Actinidia chinensis HOM05D007202 ORTHO05D009125 1.1e-06 59.7 150 29.3
SEGI_11175 Sequoiadendron giganteum HOM05D007202 ORTHO05D009125 1.1e-06 59.7 157 26.1
CiPaw.01G097300 Carya illinoinensis HOM05D007128 ORTHO05D009059 1.4e-06 59.3 174 25.3
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 1.4e-06 59.3 161 24.8
ATR1120G035 Amborella trichopoda HOM05D007409 ORTHO05D009264 1.8e-06 58.9 132 23.5
CsaV3_6G003710 Cucumis sativus L. HOM05D007128 ORTHO05D009059 1.8e-06 58.9 206 23.3
Mapoly0122s0044 Marchantia polymorpha HOM05D006596 ORTHO05D006702 1.8e-06 58.9 129 24.8
AL1G16720 Arabidopsis lyrata HOM05D007128 ORTHO05D009059 2.4e-06 58.5 206 21.8
Glyma.05G142300 Glycine max HOM05D006740 ORTHO05D008571 2.4e-06 58.5 177 24.3
Gohir.A06G158900 Gossypium hirsutum HOM05D005973 ORTHO05D007285 3.1e-06 58.2 170 26.5
Nn5g27627 Nelumbo nucifera HOM05D007128 ORTHO05D009059 3.1e-06 58.2 144 26.4
CDE05G0100 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 4.1e-06 57.8 112 32.1
ClCG08G004220 Citrullus lanatus HOM05D007128 ORTHO05D009059 4.1e-06 57.8 203 22.2
Ciclev10018682m.g Citrus clementina HOM05D007128 ORTHO05D009059 4.1e-06 57.8 174 24.7
TAR622G0387 Trochodendron aralioides HOM05D007202 ORTHO05D009125 4.1e-06 57.8 145 24.8
Haze_00709 Corylus avellana HOM05D007128 ORTHO05D009059 5.3e-06 57.4 186 24.7
Cfa015785 Carpinus fangiana HOM05D007128 ORTHO05D009059 7.0e-06 57.0 186 24.2
PSO063G2745 Papaver somniferum HOM05D007661 ORTHO05D009671 7.0e-06 57.0 173 24.3
Sc10g0006710 Simmondsia chinensis HOM05D007202 ORTHO05D009125 7.0e-06 57.0 147 25.9
Phvul.003G009700 Phaseolus vulgaris HOM05D007409 ORTHO05D009264 9.1e-06 56.6 149 25.5
SGA_v2.0_scaffold64G22096 Striga asiatica HOM05D007409 ORTHO05D009264 9.1e-06 56.6 143 24.5


User provided reference genes

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