Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0743G005 Amborella trichopoda HOM05D005513 ORTHO05D006848 4.2e-195 684.5 341 100.0
TWI38G0850 Tripterygium wilfordii HOM05D005513 ORTHO05D006848 9.2e-134 480.7 300 77.7
TAR362G0948 Trochodendron aralioides HOM05D005513 ORTHO05D006848 9.2e-134 480.7 316 75.6
CSS0036954 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 1.6e-133 479.9 304 76.6
Nn7g37504 Nelumbo nucifera HOM05D005513 ORTHO05D006848 3.5e-133 478.8 314 73.9
Manes.05G132000 Manihot esculenta HOM05D005513 ORTHO05D006848 6.0e-133 478.0 314 73.2
Actinidia11441 Actinidia chinensis HOM05D005513 ORTHO05D006848 2.3e-132 476.1 317 75.1
Cfa015273 Carpinus fangiana HOM05D005513 ORTHO05D006848 2.3e-132 476.1 314 72.9
Cpa.g.sc343.3 Carica papaya HOM05D005513 ORTHO05D006848 2.5e-131 472.6 314 73.2
Potri.019G099100 Populus trichocarpa HOM05D005513 ORTHO05D006848 1.2e-130 470.3 304 74.0
QL10p057731 Quercus lobata HOM05D005513 ORTHO05D006848 1.6e-130 469.9 313 71.9
CANSAT56G3287 Cannabis sativa HOM05D005513 ORTHO05D006848 2.1e-130 469.5 315 73.0
Lalb_Chr16g0384361 Lupinus albus HOM05D005513 ORTHO05D006848 4.7e-130 468.4 311 72.0
SalBow3G2273 Salvia bowleyana HOM05D005513 ORTHO05D006848 4.7e-130 468.4 304 73.7
Sabra19G0110200 Salix brachista HOM05D005513 ORTHO05D006848 6.2e-130 468.0 304 73.4
Atru.chr4.1482 Acer truncatum HOM05D005513 ORTHO05D006848 1.1e-129 467.2 314 71.3
RcHm_v2.0_Chr2g0085091 Rosa chinensis HOM05D005513 ORTHO05D006848 4.0e-129 465.3 314 72.0
GSVIVG01038190001 Vitis vinifera HOM05D005513 ORTHO05D006848 4.0e-129 465.3 315 73.0
PGR042G2305 Punica granatum HOM05D005513 ORTHO05D006848 5.2e-129 464.9 304 73.7
FAN26G1480 Fragaria x ananassa HOM05D005513 ORTHO05D006848 6.8e-129 464.5 314 71.0
FAN23G0174 Fragaria x ananassa HOM05D005513 ORTHO05D006848 8.9e-129 464.2 314 71.3
Medtr4g087590 Medicago truncatula HOM05D005513 ORTHO05D006848 8.9e-129 464.2 300 73.7
Nitab4.5_0001936g0090 Nicotiana tabacum HOM05D005513 ORTHO05D006848 8.9e-129 464.2 300 76.0
Duzib151G0764 Durio zibethinus HOM05D005513 ORTHO05D006848 1.5e-128 463.4 300 75.0
VMungo0251G3259 Vigna mungo HOM05D005513 ORTHO05D006848 1.5e-128 463.4 314 71.3
Ca_18624_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 2.0e-128 463.0 300 73.0
Phvul.003G059600 Phaseolus vulgaris HOM05D005513 ORTHO05D006848 2.0e-128 463.0 314 71.0
arahy.Tifrunner.gnm1.ann1.GC3WT6 Arachis hypogaea HOM05D005513 ORTHO05D006848 2.6e-128 462.6 314 71.3
arahy.Tifrunner.gnm1.ann1.GWB5D5 Arachis hypogaea HOM05D005513 ORTHO05D006848 4.4e-128 461.8 314 71.0
CSS0028849 Camellia sinensis var. sinensis HOM05D005513 ORTHO05D006848 4.4e-128 461.8 283 79.2
Prupe.7G267200 Prunus persica HOM05D005513 ORTHO05D006848 7.6e-128 461.1 314 71.3
FvH4_1g00490 Fragaria vesca HOM05D005513 ORTHO05D006848 1.3e-127 460.3 314 70.1
Gohir.A10G146000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 2.2e-127 459.5 300 73.7
Gohir.D10G121000 Gossypium hirsutum HOM05D005513 ORTHO05D006848 2.2e-127 459.5 300 74.0
Gorai.011G132900 Gossypium raimondii HOM05D005513 ORTHO05D006848 2.2e-127 459.5 300 74.0
Nitab4.5_0008882g0020 Nicotiana tabacum HOM05D005513 ORTHO05D006848 2.2e-127 459.5 300 75.0
Cc09_g04220 Coffea canephora HOM05D005513 ORTHO05D006848 2.9e-127 459.1 302 72.5
Thecc.04G162400 Theobroma cacao HOM05D005513 ORTHO05D006848 2.9e-127 459.1 300 75.0
Glyma.02G138700 Glycine max HOM05D005513 ORTHO05D006848 3.7e-127 458.8 316 69.0
vmacro15699 Vaccinium macrocarpon HOM05D005513 ORTHO05D006848 3.7e-127 458.8 316 71.5
CAN.G1579.15 Capsicum annuum HOM05D005513 ORTHO05D006848 4.9e-127 458.4 300 74.7
CiPaw.01G170000 Carya illinoinensis HOM05D005513 ORTHO05D006848 4.9e-127 458.4 314 70.1
Lj4g0013603 Lotus japonicus HOM05D005513 ORTHO05D006848 4.9e-127 458.4 300 73.3
Glyma.07G206300 Glycine max HOM05D005513 ORTHO05D006848 6.4e-127 458.0 304 72.0
TPR.G23516 Trifolium pratense HOM05D005513 ORTHO05D006848 6.4e-127 458.0 300 72.3
Eucgr.L00024 Eucalyptus grandis HOM05D005513 ORTHO05D006848 8.4e-127 457.6 304 73.0
Ciclev10021262m.g Citrus clementina HOM05D005513 ORTHO05D006848 1.1e-126 457.2 300 72.7
Migut.F01838 Erythranthe guttata HOM05D005513 ORTHO05D006848 1.4e-126 456.8 343 65.9
COL.COLO4_08197 Corchorus olitorius HOM05D005513 ORTHO05D006848 1.9e-126 456.4 310 72.6
Psat7g119320 Pisum sativum HOM05D005513 ORTHO05D006848 2.4e-126 456.1 300 73.0
Sed0010820 Sechium edule HOM05D005513 ORTHO05D006848 2.4e-126 456.1 314 69.4
CAN.G575.118 Capsicum annuum HOM05D005513 ORTHO05D006848 4.1e-126 455.3 300 74.0
PGSC0003DMG400004444 Solanum tuberosum HOM05D005513 ORTHO05D006848 4.1e-126 455.3 301 73.8
CAN.G2177.12 Capsicum annuum HOM05D005513 ORTHO05D006848 1.2e-125 453.8 300 73.7
PSO675G7310 Papaver somniferum HOM05D005513 ORTHO05D006848 2.7e-125 452.6 301 73.1
Os08g0542600 Oryza sativa ssp. japonica HOM05D005513 ORTHO05D006848 4.6e-125 451.8 300 71.3
QL10p057421 Quercus lobata HOM05D005513 ORTHO05D006848 4.6e-125 451.8 282 76.6
Atru.chr4.1511 Acer truncatum HOM05D005587 ORTHO05D007287 6.0e-125 451.4 305 71.1
MSTRG.8188 Avicennia marina HOM05D005513 ORTHO05D006848 7.8e-125 451.1 304 71.1
Sed0015185 Sechium edule HOM05D005513 ORTHO05D006848 7.8e-125 451.1 304 70.1
EL10Ac3g06111 Beta vulgaris HOM05D005513 ORTHO05D006848 1.3e-124 450.3 335 66.0
FAN28G1408 Fragaria x ananassa HOM05D005513 ORTHO05D006848 5.1e-124 448.4 334 66.2
PSO541G5416 Papaver somniferum HOM05D005513 ORTHO05D006848 5.1e-124 448.4 300 73.0
Zm00001eb037350 Zea mays HOM05D005513 ORTHO05D006848 5.1e-124 448.4 297 71.0
RhsimUnG0015400 Rhododendron simsii HOM05D005513 ORTHO05D006848 6.6e-124 448.0 339 67.3
Sopen12g019010 Solanum pennellii HOM05D005513 ORTHO05D006848 1.5e-123 446.8 301 72.1
Atru.BG.100.p Acer truncatum HOM05D005513 ORTHO05D006848 1.9e-123 446.4 282 75.5
Ca_18630_v3 Cicer arietinum L. HOM05D005513 ORTHO05D006848 2.5e-123 446.0 284 74.3
HPP92_011686 Vanilla planifolia HOM05D005513 ORTHO05D006848 2.5e-123 446.0 300 71.3
AUR62002417 Chenopodium quinoa HOM05D005513 ORTHO05D006848 3.3e-123 445.7 296 70.9
HPP92_011691 Vanilla planifolia HOM05D005513 ORTHO05D006848 7.3e-123 444.5 300 71.3
Aqoxy2G04162 Aquilegia oxysepala HOM05D005513 ORTHO05D006848 1.2e-122 443.7 300 71.0
Peaxi162Scf00544g00118 Petunia axillaris HOM05D005513 ORTHO05D006848 1.6e-122 443.4 300 71.7
CAN.G575.103 Capsicum annuum HOM05D005513 ORTHO05D006848 3.6e-122 442.2 299 72.6
AUR62023772 Chenopodium quinoa HOM05D005513 ORTHO05D006848 1.4e-121 440.3 296 70.6
THA.LOC104801693 Tarenaya hassleriana HOM05D005513 ORTHO05D006848 1.8e-121 439.9 302 67.5
CAN.G2107.3 Capsicum annuum HOM05D005513 ORTHO05D006848 4.0e-121 438.7 296 73.3
Peaxi162Scf00544g00117 Petunia axillaris HOM05D005513 ORTHO05D006848 1.2e-120 437.2 300 71.0
Oeu057533.3 Olea europaea HOM05D005513 ORTHO05D006848 3.4e-120 435.6 347 63.7
Rhsim02G0085900 Rhododendron simsii HOM05D005513 ORTHO05D006848 3.4e-120 435.6 357 63.9
Hund12358 Selenicereus undatus HOM05D005513 ORTHO05D006848 3.4e-120 435.6 312 67.0
HanXRQChr10g0285921 Helianthus annuus HOM05D005513 ORTHO05D006848 4.4e-120 435.3 299 68.9
CsaV3_6G032350 Cucumis sativus L. HOM05D005513 ORTHO05D006848 2.9e-119 432.6 314 67.2
SEGI_26385 Sequoiadendron giganteum HOM05D005513 ORTHO05D006848 4.9e-119 431.8 335 61.5
Aa31LG3G16700 Aethionema arabicum HOM05D005513 ORTHO05D006848 4.2e-118 428.7 299 67.2
MD15G1148400 Malus domestica HOM05D005513 ORTHO05D006848 4.2e-118 428.7 283 72.8
Eucgr.G01603 Eucalyptus grandis HOM05D005513 ORTHO05D006848 7.1e-118 427.9 304 70.1
Lsat_1_v5_gn_2_40261 Lactuca sativa HOM05D005513 ORTHO05D006848 5.1e-116 421.8 322 64.9
Lj6A199G41 Lonicera japonica HOM05D005513 ORTHO05D006848 1.1e-115 420.6 285 73.0
AL6G20970 Arabidopsis lyrata HOM05D005513 ORTHO05D006848 3.3e-115 419.1 299 65.9
Sp6g32980 Schrenkiella parvula HOM05D005513 ORTHO05D006848 4.3e-115 418.7 299 66.6
CARHR202830 Cardamine hirsuta HOM05D005513 ORTHO05D006848 1.6e-114 416.8 300 66.0
BcaB05g21485 Brassica carinata HOM05D005513 ORTHO05D006848 2.8e-114 416.0 300 66.3
C02p04480 Brassica napus HOM05D005513 ORTHO05D006848 2.8e-114 416.0 300 66.3
BolC2t06408H Brassica oleracea HOM05D005513 ORTHO05D006848 3.6e-114 415.6 300 66.3
Carub.0006s0894 Capsella rubella HOM05D005513 ORTHO05D006848 4.8e-114 415.2 300 65.7
Thhalv10014198m.g Eutrema salsugineum HOM05D005513 ORTHO05D006848 1.1e-113 414.1 299 65.6
ECA238G0802 Erigeron canadensis HOM05D005513 ORTHO05D006848 1.8e-113 413.3 285 69.1
A02p00500 Brassica napus HOM05D005513 ORTHO05D006848 4.0e-113 412.1 300 65.7
BraA02t05034Z Brassica rapa HOM05D005513 ORTHO05D006848 9.0e-113 411.0 300 65.0
AT5G10460 Arabidopsis thaliana HOM05D005513 ORTHO05D006848 1.2e-112 410.6 299 64.5
MELO3C011447.2 Cucumis melo HOM05D005513 ORTHO05D006848 1.1e-110 404.1 344 60.5
BcaC03g13313 Brassica carinata HOM05D005513 ORTHO05D006848 8.7e-108 394.4 300 64.0
Dinv33223 Davidia involucrata HOM05D005513 ORTHO05D006848 4.3e-107 392.1 250 76.4
CAN.G575.78 Capsicum annuum HOM05D005513 ORTHO05D006848 5.5e-102 375.2 250 72.8
SGA_v2.0_scaffold122G33215 Striga asiatica HOM05D005513 ORTHO05D006848 5.5e-102 375.2 280 66.1
ClCG08G010170 Citrullus lanatus HOM05D005513 ORTHO05D006848 1.6e-101 373.6 309 61.8
Solyc12g038820.1 Solanum lycopersicum HOM05D005513 ORTHO05D006848 1.6e-101 373.6 251 72.5
Sc19g0006410 Simmondsia chinensis HOM05D005513 ORTHO05D006848 4.6e-101 372.1 250 70.8
SMO119G0305 Selaginella moellendorffii HOM05D005513 ORTHO05D006848 1.8e-100 370.2 300 59.3
CAN.G2075.11 Capsicum annuum HOM05D005513 ORTHO05D006848 1.5e-99 367.1 299 62.9
Nitab4.5_0002604g0050 Nicotiana tabacum HOM05D005513 ORTHO05D006848 9.6e-99 364.4 293 63.5
Nitab4.5_0000241g0250 Nicotiana tabacum HOM05D005513 ORTHO05D006848 3.2e-94 349.4 260 66.5
DCAR_005450 Daucus carota HOM05D005513 ORTHO05D006848 1.0e-87 327.8 209 76.1
Haze_01354 Corylus avellana HOM05D005513 ORTHO05D006848 1.0e-84 317.8 206 72.8
CAN.G2075.13 Capsicum annuum HOM05D005513 ORTHO05D006848 3.4e-80 302.8 235 66.4
Lj6A58T47 Lonicera japonica HOM05D005513 ORTHO05D006848 6.5e-79 298.5 201 74.1
Medtr4g087600 Medicago truncatula HOM05D005513 ORTHO05D006848 4.5e-72 275.8 208 63.5
CAN.G181.20 Capsicum annuum HOM05D005513 ORTHO05D006848 4.2e-70 269.2 191 68.6
MCO04G248 Micromonas commoda HOM05D005513 ORTHO05D006848 5.7e-67 258.8 336 43.2
AUR62021707 Chenopodium quinoa HOM05D005513 ORTHO05D006848 1.7e-66 257.3 186 65.1
PRCOL_00005454 Prasinoderma coloniale HOM05D005513 ORTHO05D006848 1.5e-62 244.2 303 45.9
Lj6A193T36 Lonicera japonica HOM05D005513 ORTHO05D006848 1.5e-54 217.6 177 66.7
CAN.G1703.16 Capsicum annuum HOM05D005513 ORTHO05D006848 4.7e-53 212.6 142 76.1
Gorai.004G148900 Gossypium raimondii HOM05D005513 ORTHO05D006848 4.8e-50 202.6 150 68.0
CAN.G1565.3 Capsicum annuum HOM05D005513 ORTHO05D006848 1.8e-49 200.7 300 40.3
Cre14.g609300 Chlamydomonas reinhardtii HOM05D005513 ORTHO05D006848 5.4e-49 199.1 318 37.1
SHI25989 Sapria himalayana HOM05D000105 ORTHO05D000023 2.1e-45 187.2 170 55.3
Lj6A58T48 Lonicera japonica HOM05D005513 ORTHO05D006848 4.0e-36 156.4 112 68.8
Cc00_g04390 Coffea canephora HOM05D005513 ORTHO05D006848 2.0e-35 154.1 121 60.3
Lj6A203T27 Lonicera japonica HOM05D005513 ORTHO05D006848 2.6e-35 153.7 100 72.0
CAN.G1703.15 Capsicum annuum HOM05D005513 ORTHO05D006848 6.2e-29 132.5 91 69.2
Lj6A203G20 Lonicera japonica HOM05D005513 ORTHO05D006848 4.1e-25 119.8 176 40.3
CAN.G12630.1 Capsicum annuum HOM05D005513 ORTHO05D006848 4.3e-22 109.8 79 65.8
EL10Ac7g16782 Beta vulgaris HOM05D005513 ORTHO05D006848 5.2e-20 102.8 67 70.1
Lj6C203G2 Lonicera japonica HOM05D005513 ORTHO05D006848 1.3e-18 98.2 71 66.2
RcHm_v2.0_Chr2g0085051 Rosa chinensis HOM05D005513 ORTHO05D343180 1.2e-16 91.7 85 54.1
Lj6A192T18 Lonicera japonica HOM05D005513 ORTHO05D006848 5.6e-14 82.8 56 67.9
SHI25988 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-12 78.6 87 49.4
Lj6A230T44 Lonicera japonica HOM05D005513 ORTHO05D006848 2.0e-11 74.3 53 73.6
SHI25987 Sapria himalayana HOM05D005513 ORTHO05D006848 6.6e-07 59.3 49 53.1


User provided reference genes

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