Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0739G206 Amborella trichopoda HOM05D005809 ORTHO05D007259 1.4e-125 453.0 232 100.0
QL02p093215 Quercus lobata HOM05D005809 ORTHO05D007259 9.9e-71 270.8 227 62.1
Dinv41380 Davidia involucrata HOM05D005809 ORTHO05D007259 6.0e-68 261.5 230 61.3
Nn8g39891 Nelumbo nucifera HOM05D005809 ORTHO05D007259 1.3e-67 260.4 227 59.9
CSS0045900 Camellia sinensis var. sinensis HOM05D005809 ORTHO05D007259 8.6e-67 257.7 229 59.8
MELO3C004136.2 Cucumis melo HOM05D005809 ORTHO05D007259 1.9e-66 256.5 227 59.5
CsaV3_2G007490 Cucumis sativus L. HOM05D005809 ORTHO05D007259 1.9e-66 256.5 227 59.5
Prupe.7G262800 Prunus persica HOM05D005809 ORTHO05D007259 1.9e-66 256.5 229 59.8
Thecc.09G030800 Theobroma cacao HOM05D005809 ORTHO05D007259 3.3e-66 255.8 227 59.9
TAR636G3217 Trochodendron aralioides HOM05D005809 ORTHO05D007259 5.6e-66 255.0 227 59.9
GSVIVG01023603001 Vitis vinifera HOM05D005809 ORTHO05D007259 1.6e-65 253.4 227 59.0
Ciclev10009378m.g Citrus clementina HOM05D005809 ORTHO05D007259 2.8e-65 252.7 227 59.0
Lalb_Chr23g0275681 Lupinus albus HOM05D005809 ORTHO05D007259 4.7e-65 251.9 227 61.7
Sabra06G0140200 Salix brachista HOM05D005809 ORTHO05D007259 6.2e-65 251.5 230 58.3
Glyma.06G219200 Glycine max HOM05D005809 ORTHO05D007259 8.1e-65 251.1 229 58.1
MD02G1007700 Malus domestica HOM05D005809 ORTHO05D007259 8.1e-65 251.1 229 58.1
Atru.chr7.51 Acer truncatum HOM05D005809 ORTHO05D007259 1.4e-64 250.4 229 58.1
Eucgr.C02542 Eucalyptus grandis HOM05D005809 ORTHO05D007259 3.1e-64 249.2 227 59.5
Eucgr.C02492 Eucalyptus grandis HOM05D005809 ORTHO05D007259 5.2e-64 248.4 227 58.6
PGSC0003DMG401011139 Solanum tuberosum HOM05D005809 ORTHO05D007259 6.8e-64 248.1 227 57.7
CiPaw.15G168900 Carya illinoinensis HOM05D005809 ORTHO05D007259 1.5e-63 246.9 227 57.7
Dinv43244 Davidia involucrata HOM05D005809 ORTHO05D007259 1.5e-63 246.9 234 58.5
RcHm_v2.0_Chr2g0085671 Rosa chinensis HOM05D005809 ORTHO05D007259 1.5e-63 246.9 227 59.9
CANSAT11G2656 Cannabis sativa HOM05D005809 ORTHO05D007259 2.0e-63 246.5 230 58.7
Duzib187G1947 Durio zibethinus HOM05D005809 ORTHO05D007259 2.6e-63 246.1 227 58.6
Manes.06G033951 Manihot esculenta HOM05D005809 ORTHO05D007259 4.4e-63 245.4 231 58.9
Solyc07g005640.3 Solanum lycopersicum HOM05D005809 ORTHO05D007259 5.8e-63 245.0 227 57.3
COL.COLO4_18808 Corchorus olitorius HOM05D005809 ORTHO05D007259 7.6e-63 244.6 227 56.8
Gorai.009G057000 Gossypium raimondii HOM05D005809 ORTHO05D007259 7.6e-63 244.6 227 56.8
Phvul.009G195100 Phaseolus vulgaris HOM05D005809 ORTHO05D007259 7.6e-63 244.6 227 57.7
FvH4_1g00940 Fragaria vesca HOM05D005809 ORTHO05D007259 9.9e-63 244.2 228 57.9
FAN23G2666 Fragaria x ananassa HOM05D005809 ORTHO05D007259 9.9e-63 244.2 228 58.8
Aqoxy2G02328 Aquilegia oxysepala HOM05D005809 ORTHO05D007259 1.3e-62 243.8 227 58.1
TWI32G0918 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 1.3e-62 243.8 233 55.8
Ca_03733_v3 Cicer arietinum L. HOM05D005809 ORTHO05D007259 1.7e-62 243.4 228 58.3
Gohir.D05G056000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 1.7e-62 243.4 227 56.4
Lj6g0016819 Lotus japonicus HOM05D005809 ORTHO05D007259 1.7e-62 243.4 227 57.7
Hma1.2p1_0222F.1_g093550 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 2.2e-62 243.0 227 56.8
Psat1g021800 Pisum sativum HOM05D005809 ORTHO05D007259 2.2e-62 243.0 227 58.1
Sopen07g001740 Solanum pennellii HOM05D005809 ORTHO05D007259 2.2e-62 243.0 227 56.8
Haze_19206 Corylus avellana HOM05D005809 ORTHO05D007259 3.8e-62 242.3 230 55.2
Potri.006G184600 Populus trichocarpa HOM05D005809 ORTHO05D007259 6.4e-62 241.5 231 56.7
Sed0001225 Sechium edule HOM05D005809 ORTHO05D007259 1.4e-61 240.4 227 55.5
CARHR271730 Cardamine hirsuta HOM05D005809 ORTHO05D007259 2.4e-61 239.6 231 55.0
Sc08g0005640 Simmondsia chinensis HOM05D005809 ORTHO05D007259 3.2e-61 239.2 228 54.4
TPR.G20735 Trifolium pratense HOM05D005809 ORTHO05D007259 7.1e-61 238.0 227 56.8
Migut.J01341 Erythranthe guttata HOM05D005809 ORTHO05D007259 9.2e-61 237.7 227 56.8
MSTRG.19648 Avicennia marina HOM05D005809 ORTHO05D007259 1.2e-60 237.3 227 58.1
SEGI_31268 Sequoiadendron giganteum HOM05D005809 ORTHO05D007259 1.6e-60 236.9 229 56.3
TWI34G1090 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 2.1e-60 236.5 243 54.3
arahy.Tifrunner.gnm1.ann1.46B1EJ Arachis hypogaea HOM05D005809 ORTHO05D007259 2.7e-60 236.1 229 54.6
SalBow1G5910 Salvia bowleyana HOM05D005809 ORTHO05D007259 2.7e-60 236.1 229 57.2
Medtr2g460780 Medicago truncatula HOM05D005809 ORTHO05D007259 4.6e-60 235.3 228 57.5
arahy.Tifrunner.gnm1.ann1.Z5GGTZ Arachis hypogaea HOM05D005809 ORTHO05D007259 1.0e-59 234.2 227 55.5
Glyma.06G219400 Glycine max HOM05D005809 ORTHO05D007259 1.3e-59 233.8 227 55.1
HanXRQChr17g0552351 Helianthus annuus HOM05D005809 ORTHO05D007259 2.3e-59 233.0 227 55.5
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 2.3e-59 233.0 227 56.8
Thhalv10014592m.g Eutrema salsugineum HOM05D005809 ORTHO05D007259 3.0e-59 232.6 228 55.7
AL8G34030 Arabidopsis lyrata HOM05D005809 ORTHO05D007259 3.9e-59 232.3 227 55.1
Rhsim01G0033400 Rhododendron simsii HOM05D005809 ORTHO05D007259 8.7e-59 231.1 228 55.7
AT5G57950 Arabidopsis thaliana HOM05D005809 ORTHO05D007259 1.1e-58 230.7 227 54.6
BraA10t43609Z Brassica rapa HOM05D005809 ORTHO05D007259 1.1e-58 230.7 231 53.7
PGR102G1797 Punica granatum HOM05D005809 ORTHO05D007259 1.5e-58 230.3 229 56.3
Sp6g19620 Schrenkiella parvula HOM05D005809 ORTHO05D007259 1.5e-58 230.3 231 53.7
SMO361G0248 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 2.5e-58 229.6 228 54.4
Carub.0008s1848 Capsella rubella HOM05D005809 ORTHO05D007259 3.3e-58 229.2 227 53.7
CAN.G160.58 Capsicum annuum HOM05D005809 ORTHO05D007259 3.3e-58 229.2 241 53.1
C09p49790 Brassica napus HOM05D005809 ORTHO05D007259 4.3e-58 228.8 227 52.4
vmacro16802 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 5.6e-58 228.4 285 49.1
Os09g0420600 Oryza sativa ssp. japonica HOM05D005809 ORTHO05D007259 7.3e-58 228.0 227 54.6
SMO361G0343 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 7.3e-58 228.0 228 53.9
Duzib168G0271 Durio zibethinus HOM05D005809 ORTHO05D007259 9.6e-58 227.6 232 53.9
THA.LOC104817821 Tarenaya hassleriana HOM05D005809 ORTHO05D007259 9.6e-58 227.6 228 54.4
A10p16200 Brassica napus HOM05D005809 ORTHO05D007259 2.1e-57 226.5 231 51.9
BolC9t57830H Brassica oleracea HOM05D005809 ORTHO05D007259 2.8e-57 226.1 227 51.5
Oeu052197.1 Olea europaea HOM05D005809 ORTHO05D007259 2.8e-57 226.1 231 57.1
ClCG02G014530 Citrullus lanatus HOM05D005809 ORTHO05D007259 6.2e-57 224.9 215 55.8
Cpa.g.sc46.154 Carica papaya HOM05D005809 ORTHO05D007259 8.1e-57 224.6 227 53.3
ECA247G0266 Erigeron canadensis HOM05D005809 ORTHO05D007259 8.1e-57 224.6 227 56.8
Aa31LG3G13770 Aethionema arabicum HOM05D000853 ORTHO05D000723 1.1e-56 224.2 226 51.3
Zm00001eb312980 Zea mays HOM05D005809 ORTHO05D007259 1.1e-56 224.2 227 52.9
Ah.02g128190 Amaranthus hybridus HOM05D005809 ORTHO05D007259 6.9e-56 221.5 227 52.0
Mapoly0003s0072 Marchantia polymorpha HOM05D005809 ORTHO05D007259 9.0e-56 221.1 231 52.4
SGA_v2.0_scaffold265G46107 Striga asiatica HOM05D005809 ORTHO05D007259 1.3e-54 217.2 227 55.9
HPP92_016019 Vanilla planifolia HOM05D005809 ORTHO05D007259 2.9e-54 216.1 227 50.7
Peaxi162Scf00401g00082 Petunia axillaris HOM05D005809 ORTHO05D007259 8.4e-54 214.5 221 54.3
Nitab4.5_0005653g0040 Nicotiana tabacum HOM05D005809 ORTHO05D007259 7.1e-53 211.5 227 52.4
PSO782G1751 Papaver somniferum HOM05D005809 ORTHO05D007259 1.2e-52 210.7 227 49.8
Gohir.A05G055000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 2.1e-52 209.9 227 51.5
PSO063G2086 Papaver somniferum HOM05D005809 ORTHO05D007259 3.5e-52 209.1 227 49.8
Lsat_1_v5_gn_8_63301 Lactuca sativa HOM05D005809 ORTHO05D007259 6.0e-52 208.4 246 50.4
Nitab4.5_0001571g0010 Nicotiana tabacum HOM05D005809 ORTHO05D007259 1.3e-51 207.2 234 52.1
CDE12G0564 Ceratophyllum demersum HOM05D005809 ORTHO05D007259 3.9e-51 205.7 253 46.2
AagrBONN_evm.TU.Sc2ySwM_117.3948 Anthoceros agrestis HOM05D005809 ORTHO05D007259 6.6e-51 204.9 227 48.5
HPP92_016035 Vanilla planifolia HOM05D005809 ORTHO05D007259 2.5e-50 203.0 208 51.9
Pp3c8_2960 Physcomitrium patens HOM05D005809 ORTHO05D007259 9.6e-50 201.1 234 46.6
DCAR_017909 Daucus carota HOM05D005809 ORTHO05D007259 4.8e-49 198.7 262 45.4
Actinidia04301 Actinidia chinensis HOM05D005809 ORTHO05D007259 8.1e-49 198.0 227 48.5
FAN28G0834 Fragaria x ananassa HOM05D005809 ORTHO05D007259 8.4e-46 188.0 236 47.0
Hund01517 Selenicereus undatus HOM05D005809 ORTHO05D007259 3.2e-45 186.0 227 47.6
Pp3c16_13530 Physcomitrium patens HOM05D005809 ORTHO05D007259 1.6e-44 183.7 222 44.1
AUR62035200 Chenopodium quinoa HOM05D005809 ORTHO05D007259 6.7e-43 178.3 227 45.8
Lj9C717G7 Lonicera japonica HOM05D005809 ORTHO05D007259 8.7e-43 177.9 228 45.2
Actinidia38322 Actinidia chinensis HOM05D005809 ORTHO05D007259 1.3e-41 174.1 169 59.2
vmacro05441 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 2.1e-41 173.3 192 51.0
SHI02853 Sapria himalayana HOM05D005809 ORTHO05D007259 6.9e-40 168.3 222 42.8
Dinv42856 Davidia involucrata HOM05D005809 ORTHO05D007259 1.1e-37 161.0 168 56.0
Hma1.2p1_0010F.1_g006710 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 2.1e-36 156.8 162 53.1
Sed0002126 Sechium edule HOM05D005809 ORTHO05D007259 1.3e-35 154.1 167 52.1
CBR_g38078 Chara braunii HOM05D000019 ORTHO05D000048 4.8e-33 145.6 261 35.2
Cc06_g14990 Coffea canephora HOM05D005809 ORTHO05D007259 3.5e-28 129.4 90 68.9
FAN21G3780 Fragaria x ananassa HOM05D005809 ORTHO05D007259 2.8e-25 119.8 197 41.6
RcHm_v2.0_Chr5g0031291 Rosa chinensis HOM05D005809 ORTHO05D007259 1.4e-24 117.5 142 51.4
Cc06_g14980 Coffea canephora HOM05D005809 ORTHO05D007259 1.8e-24 117.1 92 66.3
Aa31LG1G19310 Aethionema arabicum HOM05D005809 ORTHO05D007259 1.5e-23 114.0 89 57.3
EL10As1g23143 Beta vulgaris HOM05D005809 ORTHO05D007259 3.4e-23 112.8 86 61.6
PRCOL_00000214 Prasinoderma coloniale HOM05D005809 ORTHO05D007259 1.0e-22 111.3 206 34.0
MCO13G469 Micromonas commoda HOM05D005809 ORTHO05D007259 1.3e-22 110.9 223 33.6
Cre04.g226950 Chlamydomonas reinhardtii HOM05D005809 ORTHO05D007259 2.9e-22 109.8 268 28.7
FAN25G0559 Fragaria x ananassa HOM05D005809 ORTHO05D007259 9.4e-21 104.8 87 57.5
FvH4_3g18530 Fragaria vesca HOM05D005809 ORTHO05D007259 1.7e-17 94.0 176 38.1
FAN11G2737 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.7e-17 94.0 176 38.1
EL10As1g23140 Beta vulgaris HOM05D005809 ORTHO05D007259 4.1e-16 89.4 63 68.3
Oeu007777.1 Olea europaea HOM05D005809 ORTHO05D007259 5.3e-16 89.0 80 53.8
Oeu038698.1 Olea europaea HOM05D005809 ORTHO05D007259 1.2e-15 87.8 80 53.8
Hma1.2p1_0222F.1_g093570 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 1.5e-15 87.4 74 62.2
Oeu049715.1 Olea europaea HOM05D005809 ORTHO05D007259 1.5e-15 87.4 80 52.5
Oeu017561.1 Olea europaea HOM05D005809 ORTHO05D007259 2.2e-14 83.6 80 51.2
FAN26G2229 Fragaria x ananassa HOM05D005809 ORTHO05D007259 7.9e-12 75.1 57 61.4
Oeu029241.1 Olea europaea HOM05D005809 ORTHO05D007259 2.0e-10 70.5 77 44.2
MD09G1175000 Malus domestica HOM05D005809 ORTHO05D007259 3.3e-10 69.7 97 44.3
vmacro11582 Vaccinium macrocarpon HOM05D005809 ORTHO05D010075 1.7e-09 67.4 67 50.7
CSS0015204 Camellia sinensis var. sinensis HOM05D000853 ORTHO05D000723 8.2e-09 65.1 54 61.1


User provided reference genes

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