Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0739G196 Amborella trichopoda HOM05D001568 ORTHO05D009161 3.0e-84 315.1 151 100.0
vmacro22256 Vaccinium macrocarpon HOM05D001568 ORTHO05D009161 1.3e-47 193.4 134 64.9
Potri.009G085700 Populus trichocarpa HOM05D001568 ORTHO05D009161 2.9e-47 192.2 134 63.4
Prupe.8G149700 Prunus persica HOM05D001568 ORTHO05D009161 1.1e-46 190.3 138 62.3
PSO541G2903 Papaver somniferum HOM05D001568 ORTHO05D009161 9.3e-46 187.2 134 61.2
Prupe.8G150000 Prunus persica HOM05D001568 ORTHO05D009161 1.6e-45 186.4 134 60.4
A07p05850 Brassica napus HOM05D001568 ORTHO05D009161 4.6e-45 184.9 134 61.2
PSO675G4557 Papaver somniferum HOM05D001568 ORTHO05D009161 6.0e-45 184.5 147 57.8
A07p05700 Brassica napus HOM05D001568 ORTHO05D009161 7.9e-45 184.1 132 62.1
BraA07t28378Z Brassica rapa HOM05D001568 ORTHO05D009161 7.9e-45 184.1 132 62.1
Sabra09G0065800 Salix brachista HOM05D001568 ORTHO05D009161 1.0e-44 183.7 134 60.4
CiPaw.06G164200 Carya illinoinensis HOM05D001568 ORTHO05D009161 1.3e-44 183.3 134 60.4
PSO541G3645 Papaver somniferum HOM05D001568 ORTHO05D009161 1.3e-44 183.3 150 58.7
RcHm_v2.0_Chr6g0248511 Rosa chinensis HOM05D001568 ORTHO05D009161 1.3e-44 183.3 134 61.9
Sp3g27770 Schrenkiella parvula HOM05D001568 ORTHO05D009161 1.3e-44 183.3 134 61.9
MD10G1109900 Malus domestica HOM05D001568 ORTHO05D009161 1.8e-44 183.0 132 60.6
Thhalv10023010m.g Eutrema salsugineum HOM05D001568 ORTHO05D009161 2.3e-44 182.6 134 61.2
Nn5g30651 Nelumbo nucifera HOM05D001568 ORTHO05D009161 2.3e-44 182.6 138 58.7
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 3.0e-44 182.2 133 62.4
BcaC06g36001 Brassica carinata HOM05D001568 ORTHO05D009161 3.0e-44 182.2 132 61.4
C07p09120 Brassica napus HOM05D001568 ORTHO05D009161 3.0e-44 182.2 132 61.4
BolC7t41323H Brassica oleracea HOM05D001568 ORTHO05D009161 3.0e-44 182.2 132 61.4
FvH4_2g03350 Fragaria vesca HOM05D001568 ORTHO05D009161 3.0e-44 182.2 134 60.4
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 5.1e-44 181.4 134 61.2
FAN27G2772 Fragaria x ananassa HOM05D001568 ORTHO05D009161 6.7e-44 181.0 134 58.2
TAR625G0338 Trochodendron aralioides HOM05D001568 ORTHO05D009161 6.7e-44 181.0 144 58.3
AL3G46300 Arabidopsis lyrata HOM05D001568 ORTHO05D009161 8.7e-44 180.6 135 60.7
BcaB05g22586 Brassica carinata HOM05D001568 ORTHO05D009161 8.7e-44 180.6 135 62.2
QL11p029372 Quercus lobata HOM05D001568 ORTHO05D009161 8.7e-44 180.6 132 62.1
BraA07t28366Z Brassica rapa HOM05D001568 ORTHO05D009161 1.1e-43 180.3 133 61.7
FAN15G0831 Fragaria x ananassa HOM05D001568 ORTHO05D009161 1.1e-43 180.3 134 59.7
FAN24G0656 Fragaria x ananassa HOM05D001568 ORTHO05D009161 1.5e-43 179.9 134 59.7
Actinidia27999 Actinidia chinensis HOM05D001568 ORTHO05D009161 1.9e-43 179.5 130 61.5
Lsat_1_v5_gn_5_117140 Lactuca sativa HOM05D001568 ORTHO05D009161 1.9e-43 179.5 133 60.9
Nitab4.5_0011705g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 2.5e-43 179.1 131 62.6
Rhsim05G0092800 Rhododendron simsii HOM05D001568 ORTHO05D009161 2.5e-43 179.1 134 60.4
FvH4_2g03390 Fragaria vesca HOM05D001568 ORTHO05D009161 3.3e-43 178.7 134 58.2
Nitab4.5_0001458g0020 Nicotiana tabacum HOM05D001568 ORTHO05D009161 4.3e-43 178.3 131 62.6
Cfa004703 Carpinus fangiana HOM05D001568 ORTHO05D009161 5.7e-43 177.9 134 58.2
CANSAT25G2862 Cannabis sativa HOM05D001568 ORTHO05D009161 9.6e-43 177.2 134 56.7
CARHR286340 Cardamine hirsuta HOM05D001568 ORTHO05D009161 9.6e-43 177.2 135 59.3
SEGI_07672 Sequoiadendron giganteum HOM05D001568 ORTHO05D009161 9.6e-43 177.2 138 58.7
TWI59G0351 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 1.3e-42 176.8 136 61.8
THA.LOC104804397 Tarenaya hassleriana HOM05D001568 ORTHO05D009161 1.6e-42 176.4 134 60.4
MBI16_g39097_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 2.8e-42 175.6 143 53.8
Duzib132G0829 Durio zibethinus HOM05D001568 ORTHO05D009161 4.8e-42 174.9 136 57.4
MSTRG.20237 Avicennia marina HOM05D001568 ORTHO05D009161 6.3e-42 174.5 136 60.3
Carub.0003s2869 Capsella rubella HOM05D001568 ORTHO05D009161 8.2e-42 174.1 132 59.8
Aqoxy5G00361 Aquilegia oxysepala HOM05D001568 ORTHO05D009161 1.1e-41 173.7 134 60.4
TWI23G0417 Tripterygium wilfordii HOM05D001568 ORTHO05D009161 1.1e-41 173.7 136 59.6
Ciclev10030269m.g Citrus clementina HOM05D001568 ORTHO05D008804 1.4e-41 173.3 134 56.0
Cc00_g18000 Coffea canephora HOM05D001568 ORTHO05D009161 1.8e-41 172.9 134 58.2
Duzib248G0869 Durio zibethinus HOM05D001568 ORTHO05D009161 2.4e-41 172.6 137 56.9
HanXRQChr10g0305111 Helianthus annuus HOM05D001568 ORTHO05D009161 2.4e-41 172.6 132 57.6
Peaxi162Scf00003g02812 Petunia axillaris HOM05D001568 ORTHO05D009161 2.4e-41 172.6 131 60.3
Atru.chr5.2303 Acer truncatum HOM05D001568 ORTHO05D009161 3.1e-41 172.2 134 57.5
COL.COLO4_32488 Corchorus olitorius HOM05D001568 ORTHO05D009161 3.1e-41 172.2 140 57.1
Solyc10g048190.1 Solanum lycopersicum HOM05D001568 ORTHO05D009161 4.1e-41 171.8 130 62.3
PGSC0003DMG400012841 Solanum tuberosum HOM05D001568 ORTHO05D009161 4.1e-41 171.8 130 61.5
Gorai.013G051500 Gossypium raimondii HOM05D001568 ORTHO05D009161 5.3e-41 171.4 137 54.7
Thecc.02G119600 Theobroma cacao HOM05D001568 ORTHO05D009161 5.3e-41 171.4 140 56.4
CAN.G1427.5 Capsicum annuum HOM05D001568 ORTHO05D009161 6.9e-41 171.0 134 57.5
Gohir.A13G047700 Gossypium hirsutum HOM05D001568 ORTHO05D009161 6.9e-41 171.0 137 54.7
Gohir.D13G046000 Gossypium hirsutum HOM05D001568 ORTHO05D009161 6.9e-41 171.0 137 54.7
unitig_0.g633 Utricularia gibba HOM05D001568 ORTHO05D009161 6.9e-41 171.0 134 57.5
AT2G14660 Arabidopsis thaliana HOM05D001568 ORTHO05D009161 1.2e-40 170.2 138 56.5
Migut.B00461 Erythranthe guttata HOM05D001568 ORTHO05D009161 1.2e-40 170.2 134 59.7
Lj1g0027535 Lotus japonicus HOM05D001568 ORTHO05D009161 1.2e-40 170.2 138 60.1
Lalb_Chr20g0110071 Lupinus albus HOM05D001568 ORTHO05D009161 2.6e-40 169.1 140 56.4
AagrBONN_evm.TU.Sc2ySwM_117.3519 Anthoceros agrestis HOM05D001568 ORTHO05D009161 4.5e-40 168.3 139 55.4
SHI05019 Sapria himalayana HOM05D001568 ORTHO05D009161 1.0e-39 167.2 136 58.1
Sc01g0002530 Simmondsia chinensis HOM05D001568 ORTHO05D009161 1.0e-39 167.2 134 57.5
Manes.10G086600 Manihot esculenta HOM05D001568 ORTHO05D009161 1.7e-39 166.4 134 53.7
PGR142G3835 Punica granatum HOM05D001568 ORTHO05D009161 2.2e-39 166.0 136 55.9
Sed0014293 Sechium edule HOM05D001568 ORTHO05D009161 2.9e-39 165.6 133 58.6
CDE07G0917 Ceratophyllum demersum HOM05D001568 ORTHO05D009161 5.0e-39 164.9 131 58.8
Cpa.g.sc91.59 Carica papaya HOM05D001568 ORTHO05D009161 6.5e-39 164.5 142 54.2
MELO3C018021.2 Cucumis melo HOM05D001568 ORTHO05D009161 6.5e-39 164.5 133 58.6
EL10Ac1g00245 Beta vulgaris HOM05D001568 ORTHO05D009161 1.4e-38 163.3 131 59.5
ClCG10G010070 Citrullus lanatus HOM05D001568 ORTHO05D009161 1.4e-38 163.3 133 57.1
Mapoly0117s0004 Marchantia polymorpha HOM05D001568 ORTHO05D009161 1.4e-38 163.3 142 54.2
TPR.G8318 Trifolium pratense HOM05D001568 ORTHO05D009161 2.5e-38 162.5 129 59.7
SGA_v2.0_scaffold32G12987 Striga asiatica HOM05D001568 ORTHO05D009161 3.2e-38 162.2 132 56.8
Glyma.01G241600 Glycine max HOM05D001568 ORTHO05D009161 4.2e-38 161.8 134 57.5
CsaV3_4G000110 Cucumis sativus L. HOM05D001568 ORTHO05D009161 5.5e-38 161.4 133 57.1
CBR_g38178 Chara braunii HOM05D001568 ORTHO05D009161 9.3e-38 160.6 139 54.0
Ah.08g217180 Amaranthus hybridus HOM05D001035 ORTHO05D001045 2.1e-37 159.5 137 56.2
Medtr5g005350 Medicago truncatula HOM05D001568 ORTHO05D009161 1.0e-36 157.1 129 58.1
VMungo1215G1258 Vigna mungo HOM05D001568 ORTHO05D009161 1.8e-36 156.4 127 59.8
HPP92_015706 Vanilla planifolia HOM05D001568 ORTHO05D009161 1.1e-35 153.7 137 55.5
HPP92_026656 Vanilla planifolia HOM05D001568 ORTHO05D009161 1.1e-35 153.7 137 55.5
Phvul.002G050900 Phaseolus vulgaris HOM05D001568 ORTHO05D009161 1.9e-35 152.9 127 59.1
MBI16_g27033_MAGBIO Magnolia biondii HOM05D001568 ORTHO05D009161 9.7e-35 150.6 143 49.0
CSS0003584 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D009161 1.4e-33 146.7 134 52.2
Os03g0676100 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 5.3e-33 144.8 146 51.4
Pp3c10_11040 Physcomitrium patens HOM05D001568 ORTHO05D009161 4.5e-32 141.7 138 49.3
Lj9P337T35 Lonicera japonica HOM05D001568 ORTHO05D009161 4.6e-29 131.7 105 58.1
Zm00001eb217400 Zea mays HOM05D001568 ORTHO05D009161 1.4e-28 130.2 139 49.6
Medtr8g027785 Medicago truncatula HOM05D001568 ORTHO05D009161 1.5e-24 116.7 129 46.5
Sopen10g020220 Solanum pennellii HOM05D001568 ORTHO05D009161 2.3e-20 102.8 91 56.0
AUR62004510 Chenopodium quinoa HOM05D001568 ORTHO05D009161 3.9e-20 102.1 89 56.2
AUR62023444 Chenopodium quinoa HOM05D001568 ORTHO05D009161 5.2e-20 101.7 89 56.2
Oeu037289.1 Olea europaea HOM05D001568 ORTHO05D009161 8.8e-20 100.9 132 40.9
Psat4g228720 Pisum sativum HOM05D001568 ORTHO05D009161 8.8e-20 100.9 91 54.9
GSVIVG01037056001 Vitis vinifera HOM05D001568 ORTHO05D008804 7.4e-19 97.8 134 39.6
MCO07G364 Micromonas commoda HOM05D001568 ORTHO05D009161 4.8e-18 95.1 164 32.9
Eucgr.I02493 Eucalyptus grandis HOM05D001568 ORTHO05D008804 2.0e-16 89.7 133 38.3
Cre12.g497650 Chlamydomonas reinhardtii HOM05D001568 ORTHO05D009161 3.8e-15 85.5 154 33.1
Os08g0485300 Oryza sativa ssp. japonica HOM05D001568 ORTHO05D009161 7.2e-14 81.3 105 41.9
BcaB03g16261 Brassica carinata HOM05D001568 ORTHO05D009161 2.7e-13 79.3 102 41.2
MD05G1105400 Malus domestica HOM05D001568 ORTHO05D009161 4.4e-11 72.0 74 44.6
ECA234G4452 Erigeron canadensis HOM05D000058 ORTHO05D000255 8.2e-10 67.8 101 39.6
COL.COLO4_02194 Corchorus olitorius HOM05D001568 ORTHO05D009161 3.5e-08 62.4 90 40.0


User provided reference genes

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