Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0739G169 Amborella trichopoda HOM05D006117 ORTHO05D007996 6.2e-66 253.8 115 100.0
Prupe.1G420700 Prunus persica HOM05D006117 ORTHO05D007996 2.6e-40 168.7 117 65.0
AUR62034997 Chenopodium quinoa HOM05D006117 ORTHO05D007996 1.7e-39 166.0 111 65.8
Ciclev10001149m.g Citrus clementina HOM05D006117 ORTHO05D007996 1.4e-38 162.9 108 63.9
RcHm_v2.0_Chr6g0309881 Rosa chinensis HOM05D006117 ORTHO05D007996 1.9e-38 162.5 117 61.5
AUR62037469 Chenopodium quinoa HOM05D006117 ORTHO05D007996 2.4e-38 162.2 104 69.2
MBI16_g39105_MAGBIO Magnolia biondii HOM05D006117 ORTHO05D007996 2.4e-38 162.2 114 63.2
SGA_v2.0_scaffold238G43920 Striga asiatica HOM05D006117 ORTHO05D007996 3.2e-38 161.8 117 59.8
FAN20G1172 Fragaria x ananassa HOM05D006117 ORTHO05D007996 7.1e-38 160.6 117 61.5
FvH4_2g32820 Fragaria vesca HOM05D006117 ORTHO05D007996 1.2e-37 159.8 117 61.5
FAN24G1443 Fragaria x ananassa HOM05D006117 ORTHO05D007996 1.2e-37 159.8 117 61.5
TAR628G0216 Trochodendron aralioides HOM05D006117 ORTHO05D007996 2.7e-37 158.7 117 61.5
FAN15G1845 Fragaria x ananassa HOM05D006117 ORTHO05D007996 3.5e-37 158.3 117 60.7
Cc10_g05140 Coffea canephora HOM05D006117 ORTHO05D007996 4.6e-37 157.9 106 62.3
Hund05287 Selenicereus undatus HOM05D006117 ORTHO05D007996 6.0e-37 157.5 104 66.3
Dinv39211 Davidia involucrata HOM05D006117 ORTHO05D007996 7.9e-37 157.1 117 60.7
Lj4C73T15 Lonicera japonica HOM05D006117 ORTHO05D007996 7.9e-37 157.1 117 59.8
Phvul.009G073200 Phaseolus vulgaris HOM05D006117 ORTHO05D007996 7.9e-37 157.1 103 64.1
SalBow7G4164 Salvia bowleyana HOM05D006117 ORTHO05D007996 7.9e-37 157.1 103 66.0
CiPaw.08G051200 Carya illinoinensis HOM05D006117 ORTHO05D007996 1.3e-36 156.4 118 61.0
MSTRG.1022 Avicennia marina HOM05D006117 ORTHO05D007996 1.8e-36 156.0 103 66.0
Cfa013754 Carpinus fangiana HOM05D006117 ORTHO05D007996 1.8e-36 156.0 103 66.0
Haze_22413 Corylus avellana HOM05D006117 ORTHO05D007996 1.8e-36 156.0 102 65.7
CANSAT25G2369 Cannabis sativa HOM05D006117 ORTHO05D007996 3.0e-36 155.2 103 65.0
Ca_15895_v3 Cicer arietinum L. HOM05D006117 ORTHO05D007996 3.9e-36 154.8 103 65.0
Oeu047247.2 Olea europaea HOM05D006117 ORTHO05D007996 3.9e-36 154.8 103 66.0
Atru.chr13.856 Acer truncatum HOM05D006117 ORTHO05D007996 5.1e-36 154.5 103 66.0
Sc15g0005470 Simmondsia chinensis HOM05D006117 ORTHO05D007996 6.7e-36 154.1 110 59.1
Medtr3g103300 Medicago truncatula HOM05D006117 ORTHO05D007996 8.7e-36 153.7 103 65.0
QL12p038374 Quercus lobata HOM05D006117 ORTHO05D007996 8.7e-36 153.7 103 64.1
EL10Ac1g02358 Beta vulgaris HOM05D006117 ORTHO05D007996 1.1e-35 153.3 111 60.4
Migut.C00400 Erythranthe guttata HOM05D006117 ORTHO05D007996 1.1e-35 153.3 117 56.4
PGR031G1695 Punica granatum HOM05D006117 ORTHO05D007996 1.5e-35 152.9 110 63.6
SEGI_31593 Sequoiadendron giganteum HOM05D006117 ORTHO05D007996 1.5e-35 152.9 103 61.2
VMungo1309G1718 Vigna mungo HOM05D006117 ORTHO05D007996 1.5e-35 152.9 103 64.1
Os03g0730000 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 1.9e-35 152.5 102 64.7
COL.COLO4_28476 Corchorus olitorius HOM05D006117 ORTHO05D007996 2.5e-35 152.1 110 60.0
vmacro21426 Vaccinium macrocarpon HOM05D006117 ORTHO05D007996 4.3e-35 151.4 120 56.7
Peaxi162Scf00028g00273 Petunia axillaris HOM05D006117 ORTHO05D007996 5.6e-35 151.0 113 57.5
TWI12G0297 Tripterygium wilfordii HOM05D006117 ORTHO05D007996 5.6e-35 151.0 100 67.0
unitig_26.g9869 Utricularia gibba HOM05D006117 ORTHO05D007996 5.6e-35 151.0 103 60.2
Psat5g038440 Pisum sativum HOM05D006117 ORTHO05D007996 7.4e-35 150.6 103 62.1
Nn5g30637 Nelumbo nucifera HOM05D006117 ORTHO05D007996 9.6e-35 150.2 119 57.1
Duzib093G0384 Durio zibethinus HOM05D006117 ORTHO05D007996 1.3e-34 149.8 103 65.0
DCAR_009868 Daucus carota HOM05D006117 ORTHO05D007996 1.6e-34 149.4 103 60.2
Lj1g0000026 Lotus japonicus HOM05D006117 ORTHO05D007996 1.6e-34 149.4 102 60.8
Sabra14G0008600 Salix brachista HOM05D006117 ORTHO05D007996 1.6e-34 149.4 102 64.7
GSVIVG01009315001 Vitis vinifera HOM05D006117 ORTHO05D007996 2.8e-34 148.7 103 64.1
AT1G27480 Arabidopsis thaliana HOM05D006117 ORTHO05D007996 3.7e-34 148.3 111 55.9
CDE07G1235 Ceratophyllum demersum HOM05D006117 ORTHO05D007996 3.7e-34 148.3 114 61.4
Gohir.A05G211300 Gossypium hirsutum HOM05D006117 ORTHO05D007996 3.7e-34 148.3 103 65.0
Gohir.D05G214600 Gossypium hirsutum HOM05D006117 ORTHO05D007996 3.7e-34 148.3 103 65.0
Aqoxy6G02537 Aquilegia oxysepala HOM05D006117 ORTHO05D007996 4.8e-34 147.9 114 56.1
Actinidia10214 Actinidia chinensis HOM05D006117 ORTHO05D007996 1.1e-33 146.7 117 55.6
Glyma.06G047700 Glycine max HOM05D006117 ORTHO05D007996 1.1e-33 146.7 103 61.2
Rhsim06G0063800 Rhododendron simsii HOM05D006117 ORTHO05D007996 1.1e-33 146.7 119 55.5
Nitab4.5_0005915g0010 Nicotiana tabacum HOM05D006117 ORTHO05D007996 1.8e-33 146.0 103 60.2
BcaB03g13981 Brassica carinata HOM05D006117 ORTHO05D007996 3.1e-33 145.2 111 56.8
Gorai.009G221300 Gossypium raimondii HOM05D006117 ORTHO05D007996 3.1e-33 145.2 103 64.1
HanXRQChr10g0279141 Helianthus annuus HOM05D006117 ORTHO05D007996 3.1e-33 145.2 106 59.4
Manes.05G182800 Manihot esculenta HOM05D006117 ORTHO05D007996 3.1e-33 145.2 103 61.2
PSO675G0076 Papaver somniferum HOM05D006117 ORTHO05D007996 3.1e-33 145.2 114 59.6
BcaC06g35298 Brassica carinata HOM05D006117 ORTHO05D007996 4.0e-33 144.8 104 58.7
C07p17700 Brassica napus HOM05D006117 ORTHO05D007996 4.0e-33 144.8 104 58.7
Thecc.08G085800 Theobroma cacao HOM05D006117 ORTHO05D007996 4.0e-33 144.8 103 63.1
ECA232G2767 Erigeron canadensis HOM05D006117 ORTHO05D007996 6.9e-33 144.1 106 58.5
AL1G40910 Arabidopsis lyrata HOM05D006117 ORTHO05D007996 9.0e-33 143.7 118 51.7
arahy.Tifrunner.gnm1.ann1.6JMM3R Arachis hypogaea HOM05D006117 ORTHO05D007996 9.0e-33 143.7 103 60.2
Eucgr.F02231 Eucalyptus grandis HOM05D006117 ORTHO05D007996 9.0e-33 143.7 106 62.3
CSS0015427 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 1.2e-32 143.3 103 62.1
CSS0025391 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 1.2e-32 143.3 103 62.1
arahy.Tifrunner.gnm1.ann1.NM5DTL Arachis hypogaea HOM05D006117 ORTHO05D007996 1.5e-32 142.9 100 61.0
Ah.05g167020 Amaranthus hybridus HOM05D006117 ORTHO05D007996 2.6e-32 142.1 108 61.1
A07p11730 Brassica napus HOM05D006117 ORTHO05D007996 2.6e-32 142.1 104 59.6
Lsat_1_v5_gn_9_81040 Lactuca sativa HOM05D006117 ORTHO05D007996 3.4e-32 141.7 104 60.6
Potri.014G014400 Populus trichocarpa HOM05D006117 ORTHO05D007996 3.4e-32 141.7 102 60.8
Solyc05g050710.3 Solanum lycopersicum HOM05D006117 ORTHO05D007996 4.5e-32 141.4 110 52.7
Carub.0001s2604 Capsella rubella HOM05D006117 ORTHO05D007996 1.0e-31 140.2 118 53.4
BraA07t28958Z Brassica rapa HOM05D006117 ORTHO05D007996 2.2e-31 139.0 104 58.7
CSS0008179 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 2.2e-31 139.0 113 55.8
CAN.G112.13 Capsicum annuum HOM05D006117 ORTHO05D007996 2.2e-31 139.0 102 55.9
Lalb_Chr08g0245231 Lupinus albus HOM05D006117 ORTHO05D007996 2.2e-31 139.0 103 57.3
Sp1g23730 Schrenkiella parvula HOM05D006117 ORTHO05D007996 2.2e-31 139.0 108 55.6
CSS0023541 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 2.9e-31 138.7 113 55.8
CARHR027100 Cardamine hirsuta HOM05D006117 ORTHO05D007996 2.9e-31 138.7 104 57.7
FAN27G0951 Fragaria x ananassa HOM05D006117 ORTHO05D007996 2.9e-31 138.7 115 55.7
Thhalv10007681m.g Eutrema salsugineum HOM05D006117 ORTHO05D007996 3.8e-31 138.3 104 57.7
PGSC0003DMG400007000 Solanum tuberosum HOM05D006117 ORTHO05D007996 6.5e-31 137.5 110 51.8
Lalb_Chr08g0245261 Lupinus albus HOM05D006117 ORTHO05D007996 3.2e-30 135.2 104 55.8
CsaV3_6G002500 Cucumis sativus L. HOM05D006117 ORTHO05D007996 1.6e-29 132.9 103 55.3
MELO3C025035.2 Cucumis melo HOM05D006117 ORTHO05D007996 3.5e-29 131.7 105 54.3
Sed0008074 Sechium edule HOM05D006117 ORTHO05D007996 4.6e-29 131.3 103 53.4
THA.LOC104807059 Tarenaya hassleriana HOM05D006117 ORTHO05D007996 4.6e-29 131.3 100 56.0
ClCG08G002010 Citrullus lanatus HOM05D006117 ORTHO05D007996 7.9e-29 130.6 103 54.4
Aa31LG7G10150 Aethionema arabicum HOM05D006117 ORTHO05D007996 1.1e-27 126.7 106 54.7
SMO347G0464 Selaginella moellendorffii HOM05D006117 ORTHO05D007996 2.8e-26 122.1 103 52.4
AagrBONN_evm.TU.Sc2ySwM_344.1796 Anthoceros agrestis HOM05D006117 ORTHO05D007996 2.0e-24 115.9 107 49.5
Mapoly0123s0013 Marchantia polymorpha HOM05D006117 ORTHO05D007996 4.5e-24 114.8 100 51.0
Pp3c2_14510 Physcomitrium patens HOM05D006117 ORTHO05D007996 5.0e-23 111.3 104 45.2
Os02g0590400 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 4.3e-19 98.2 99 47.5
Os03g0232800 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 2.8e-18 95.5 99 48.5
Zm00001eb025570 Zea mays HOM05D006117 ORTHO05D007996 4.8e-18 94.7 102 45.1
Os02g0589700 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 5.3e-17 91.3 91 49.5
Os02g0589000 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 9.0e-17 90.5 93 47.3
Zm00001eb124520 Zea mays HOM05D006117 ORTHO05D007996 2.0e-16 89.4 98 45.9
Zm00001eb096400 Zea mays HOM05D006117 ORTHO05D007996 5.9e-16 87.8 98 43.9
Zm00001eb120460 Zea mays HOM05D006117 ORTHO05D007996 1.0e-15 87.0 93 41.9
Zm00001eb096490 Zea mays HOM05D006117 ORTHO05D007996 2.2e-15 85.9 98 42.9
Os10g0163370 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 2.7e-13 79.0 90 42.2
Zm00001eb096390 Zea mays HOM05D006117 ORTHO05D007996 1.4e-12 76.6 86 40.7
Os02g0590200 Oryza sativa ssp. japonica HOM05D006117 ORTHO05D007996 1.8e-12 76.3 89 46.1
BolC7t42277H Brassica oleracea HOM05D006117 ORTHO05D007996 6.3e-10 67.8 50 52.0


User provided reference genes

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