Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 1.0e-119 433.3 210 100.0
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 2.7e-83 312.4 197 72.6
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 3.5e-83 312.0 197 73.1
Sc07g0000430 Simmondsia chinensis HOM05D004917 ORTHO05D005954 3.5e-83 312.0 194 75.8
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 4.6e-83 311.6 205 69.8
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 5.0e-82 308.1 198 69.7
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 6.6e-82 307.8 187 77.5
Cc07_g07360 Coffea canephora HOM05D004917 ORTHO05D005954 6.6e-82 307.8 197 72.1
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 1.9e-81 306.2 197 72.6
Duzib147G0189 Durio zibethinus HOM05D004917 ORTHO05D005954 2.5e-81 305.8 197 72.1
Prupe.6G216800 Prunus persica HOM05D004917 ORTHO05D005954 2.5e-81 305.8 197 72.6
Thecc.01G076400 Theobroma cacao HOM05D004917 ORTHO05D005954 3.3e-81 305.4 193 72.5
Eucgr.H02332 Eucalyptus grandis HOM05D004917 ORTHO05D005954 4.3e-81 305.1 188 75.5
Sabra14G0006700 Salix brachista HOM05D004917 ORTHO05D005954 4.3e-81 305.1 197 72.1
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 5.6e-81 304.7 207 67.6
VMungo0251G2665 Vigna mungo HOM05D004917 ORTHO05D005954 5.6e-81 304.7 193 72.5
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 9.5e-81 303.9 197 71.1
FvH4_1g18250 Fragaria vesca HOM05D004917 ORTHO05D005954 9.5e-81 303.9 193 73.6
PSO017G2968 Papaver somniferum HOM05D004917 ORTHO05D005954 9.5e-81 303.9 193 73.6
SEGI_14750 Sequoiadendron giganteum HOM05D004917 ORTHO05D005954 9.5e-81 303.9 190 74.2
Glyma.17G158400 Glycine max HOM05D004917 ORTHO05D005954 1.2e-80 303.5 193 71.5
Phvul.003G232800 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 1.2e-80 303.5 193 72.5
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 2.1e-80 302.8 193 72.5
Manes.13G109000 Manihot esculenta HOM05D004917 ORTHO05D005954 2.1e-80 302.8 182 76.4
Ciclev10026314m.g Citrus clementina HOM05D004917 ORTHO05D005954 2.8e-80 302.4 200 71.5
Nn5g30667 Nelumbo nucifera HOM05D004917 ORTHO05D005954 2.8e-80 302.4 202 71.8
Potri.014G012100 Populus trichocarpa HOM05D004917 ORTHO05D005954 2.8e-80 302.4 197 72.1
RcHm_v2.0_Chr2g0108761 Rosa chinensis HOM05D004917 ORTHO05D005954 2.8e-80 302.4 193 73.6
TAR628G1580 Trochodendron aralioides HOM05D004917 ORTHO05D005954 3.6e-80 302.0 193 73.1
Glyma.17G158500 Glycine max HOM05D004917 ORTHO05D005954 8.0e-80 300.8 193 71.0
Lj4g0024725 Lotus japonicus HOM05D004917 ORTHO05D005954 8.0e-80 300.8 206 67.5
VMungo0251G1412 Vigna mungo HOM05D004917 ORTHO05D005954 8.0e-80 300.8 193 71.5
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 1.1e-79 300.4 197 70.1
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 2.3e-79 299.3 187 71.1
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 2.3e-79 299.3 197 70.6
Atru.chr3.1060 Acer truncatum HOM05D004917 ORTHO05D005954 3.1e-79 298.9 200 70.0
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 3.1e-79 298.9 197 70.1
Os03g0729200 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 3.1e-79 298.9 188 75.5
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 5.2e-79 298.1 197 70.1
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 6.8e-79 297.7 198 67.2
GSVIVG01004399001 Vitis vinifera HOM05D004917 ORTHO05D005954 6.8e-79 297.7 193 72.0
GSVIVG01007444001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.2e-78 297.0 193 71.5
Eucgr.H02333 Eucalyptus grandis HOM05D004917 ORTHO05D005954 2.0e-78 296.2 197 71.6
PSO170G3850 Papaver somniferum HOM05D004917 ORTHO05D005954 2.0e-78 296.2 193 73.6
Phvul.003G232900 Phaseolus vulgaris HOM05D004917 ORTHO05D005954 2.0e-78 296.2 193 70.5
Ca_22095_v3 Cicer arietinum L. HOM05D004917 ORTHO05D005954 2.6e-78 295.8 188 72.9
FAN26G0787 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.6e-78 295.8 193 71.5
Psat4g080360 Pisum sativum HOM05D004917 ORTHO05D005954 2.6e-78 295.8 185 74.6
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 3.4e-78 295.4 183 74.3
Sed0017274 Sechium edule HOM05D004917 ORTHO05D005954 3.4e-78 295.4 193 72.0
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 4.4e-78 295.0 198 66.7
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 4.4e-78 295.0 198 66.7
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 4.4e-78 295.0 198 67.2
FAN19G2004 Fragaria x ananassa HOM05D004917 ORTHO05D005954 7.5e-78 294.3 192 72.4
Gorai.008G085700 Gossypium raimondii HOM05D004917 ORTHO05D005954 7.5e-78 294.3 200 70.0
RcHm_v2.0_Chr2g0108751 Rosa chinensis HOM05D004917 ORTHO05D005954 7.5e-78 294.3 197 70.1
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 7.5e-78 294.3 193 71.5
Zm00001eb215580 Zea mays HOM05D004917 ORTHO05D005954 7.5e-78 294.3 205 68.8
COL.COLO4_11615 Corchorus olitorius HOM05D004917 ORTHO05D005954 9.8e-78 293.9 199 69.8
FAN23G1748 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.3e-77 293.5 197 69.5
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 1.3e-77 293.5 193 70.5
CiPaw.01G001900 Carya illinoinensis HOM05D004917 ORTHO05D005954 2.2e-77 292.7 185 72.4
THA.LOC104827747 Tarenaya hassleriana HOM05D004917 ORTHO05D005954 2.2e-77 292.7 209 65.6
CsaV3_2G016370 Cucumis sativus L. HOM05D004917 ORTHO05D005954 2.9e-77 292.4 190 72.6
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 2.9e-77 292.4 197 68.5
Medtr4g097500 Medicago truncatula HOM05D004917 ORTHO05D005954 3.7e-77 292.0 188 71.8
Gohir.D12G076900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 4.9e-77 291.6 200 69.0
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 6.4e-77 291.2 207 64.7
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 8.3e-77 290.8 186 72.0
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 1.1e-76 290.4 183 73.2
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 1.9e-76 289.7 187 72.2
FvH4_1g18230 Fragaria vesca HOM05D004917 ORTHO05D005954 1.9e-76 289.7 197 68.5
FAN19G0182 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.9e-76 289.7 197 68.5
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 2.4e-76 289.3 195 66.2
arahy.Tifrunner.gnm1.ann1.1K25L2 Arachis hypogaea HOM05D004917 ORTHO05D005954 4.1e-76 288.5 190 71.1
FvH4_1g18251 Fragaria vesca HOM05D004917 ORTHO05D005954 4.1e-76 288.5 189 72.5
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 4.1e-76 288.5 197 68.0
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 5.4e-76 288.1 202 63.4
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 5.4e-76 288.1 202 63.4
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 5.4e-76 288.1 191 70.2
Lalb_Chr11g0075991 Lupinus albus HOM05D004917 ORTHO05D005954 9.2e-76 287.3 190 71.6
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 1.2e-75 287.0 195 65.1
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 1.2e-75 287.0 188 70.2
arahy.Tifrunner.gnm1.ann1.UB5R5Q Arachis hypogaea HOM05D004917 ORTHO05D005954 1.6e-75 286.6 190 70.5
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 2.1e-75 286.2 195 65.1
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 2.7e-75 285.8 182 69.8
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 2.7e-75 285.8 183 71.6
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 4.6e-75 285.0 194 67.5
Lsat_1_v5_gn_4_160020 Lactuca sativa HOM05D004917 ORTHO05D005954 4.6e-75 285.0 199 67.3
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 6.0e-75 284.6 195 64.1
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 1.0e-74 283.9 197 67.5
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 2.3e-74 282.7 190 69.5
ECA232G4556 Erigeron canadensis HOM05D004917 ORTHO05D005954 4.3e-73 278.5 212 61.8
DCAR_014953 Daucus carota HOM05D004917 ORTHO05D005954 5.6e-73 278.1 211 63.0
FAN28G2407 Fragaria x ananassa HOM05D004917 ORTHO05D005954 5.6e-73 278.1 180 73.9
HanXRQChr09g0262071 Helianthus annuus HOM05D004917 ORTHO05D005954 7.3e-73 277.7 193 66.8
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 1.2e-72 276.9 197 64.0
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 2.8e-72 275.8 186 69.4
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 1.5e-70 270.0 198 65.7
CDE02G4371 Ceratophyllum demersum HOM05D004917 ORTHO05D005954 5.8e-70 268.1 204 61.8
SGA_v2.0_scaffold79G25603 Striga asiatica HOM05D004917 ORTHO05D005954 7.5e-70 267.7 176 71.0
PSO017G4293 Papaver somniferum HOM05D004917 ORTHO05D005954 1.3e-69 266.9 193 65.8
Oeu013341.1 Olea europaea HOM05D004917 ORTHO05D005954 3.7e-69 265.4 181 70.2
ClCG02G012210 Citrullus lanatus HOM05D004917 ORTHO05D005954 6.4e-69 264.6 196 65.3
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 1.1e-68 263.8 197 64.5
GSVIVG01007168001 Vitis vinifera HOM05D004917 ORTHO05D005954 7.1e-68 261.2 160 76.9
MELO3C020846.2 Cucumis melo HOM05D004917 ORTHO05D005954 3.5e-67 258.8 191 64.9
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 1.0e-66 257.3 186 66.1
DCAR_000455 Daucus carota HOM05D004917 ORTHO05D005954 1.9e-65 253.1 167 70.7
Lj4A165T49 Lonicera japonica HOM05D004917 ORTHO05D005954 2.5e-65 252.7 194 62.4
RcHm_v2.0_Chr2g0108771 Rosa chinensis HOM05D004917 ORTHO05D005954 4.3e-65 251.9 202 62.4
FAN26G1896 Fragaria x ananassa HOM05D004917 ORTHO05D005954 2.8e-64 249.2 197 61.4
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 8.1e-64 247.7 182 62.6
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 1.1e-63 247.3 186 63.4
Nitab4.5_0000036g0150 Nicotiana tabacum HOM05D004917 ORTHO05D005954 3.1e-63 245.7 161 70.8
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 2.6e-62 242.7 157 72.6
Peaxi162Scf00449g00417 Petunia axillaris HOM05D004917 ORTHO05D005954 3.0e-58 229.2 203 57.1
MBI16_g06077_MAGBIO Magnolia biondii HOM05D004917 ORTHO05D005954 3.9e-58 228.8 192 61.5
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 9.0e-55 217.6 193 49.2
Nitab4.5_0007379g0030 Nicotiana tabacum HOM05D004917 ORTHO05D005954 4.9e-53 211.8 195 53.8
Hund16417 Selenicereus undatus HOM05D004917 ORTHO05D005954 3.2e-52 209.1 141 72.3
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 7.1e-52 208.0 186 52.7
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 1.7e-45 186.8 131 65.6
ATR0739G160 Amborella trichopoda HOM05D004917 ORTHO05D005954 2.9e-45 186.0 108 78.7
Zm00001eb056030 Zea mays HOM05D004917 ORTHO05D005954 6.4e-45 184.9 124 66.9
FAN23G2689 Fragaria x ananassa HOM05D004917 ORTHO05D005954 3.2e-44 182.6 170 59.4
GSVIVG01004400001 Vitis vinifera HOM05D004917 ORTHO05D005954 1.8e-39 166.8 103 73.8
QL06p038908 Quercus lobata HOM05D004917 ORTHO05D005954 2.0e-38 163.3 102 72.5
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 3.8e-29 132.5 94 63.8
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 1.9e-28 130.2 97 60.8
GSVIVG01007167001 Vitis vinifera HOM05D004917 ORTHO05D005954 4.6e-27 125.6 93 63.4
FAN26G2723 Fragaria x ananassa HOM05D004917 ORTHO05D005954 1.3e-26 124.0 188 38.8
FAN28G0406 Fragaria x ananassa HOM05D004917 ORTHO05D005954 6.7e-26 121.7 101 58.4
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 1.0e-21 107.8 191 33.0
MCO14G127 Micromonas commoda HOM05D004917 ORTHO05D005954 1.0e-21 107.8 167 36.5
ATR0739G073 Amborella trichopoda HOM05D004917 ORTHO05D005954 2.2e-21 106.7 64 73.4
MBI18_g34970_MAGBIO Magnolia biondii HOM05D007024 ORTHO05D008865 8.5e-21 104.8 205 28.8
Sp4g19560 Schrenkiella parvula HOM05D007024 ORTHO05D008865 8.5e-21 104.8 191 32.5
Lsat_1_v5_gn_2_109921 Lactuca sativa HOM05D007024 ORTHO05D008865 3.2e-20 102.8 195 30.3
Sc20g0004190 Simmondsia chinensis HOM05D007024 ORTHO05D008865 1.2e-19 100.9 205 32.2
Nitab4.5_0000848g0140 Nicotiana tabacum HOM05D007024 ORTHO05D008865 3.6e-19 99.4 202 29.7
Os03g0284600 Oryza sativa ssp. japonica HOM05D007024 ORTHO05D008865 3.6e-19 99.4 177 30.5
Nitab4.5_0010883g0010 Nicotiana tabacum HOM05D007024 ORTHO05D008865 6.1e-19 98.6 188 30.9
Aa31LG5G22570 Aethionema arabicum HOM05D007024 ORTHO05D008865 3.9e-18 95.9 194 29.4
vmacro08688 Vaccinium macrocarpon HOM05D007024 ORTHO05D008865 3.9e-18 95.9 186 29.6
COL.COLO4_10283 Corchorus olitorius HOM05D007024 ORTHO05D008865 6.7e-18 95.1 192 29.7
PSO063G4670 Papaver somniferum HOM05D007024 ORTHO05D008865 6.7e-18 95.1 186 29.6
Solyc09g007190.3 Solanum lycopersicum HOM05D007024 ORTHO05D008865 6.7e-18 95.1 201 30.8
HPP92_003601 Vanilla planifolia HOM05D007024 ORTHO05D008865 8.8e-18 94.7 179 33.0
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 1.1e-17 94.4 186 30.1
PSO782G5617 Papaver somniferum HOM05D007024 ORTHO05D008865 1.1e-17 94.4 186 30.1
Sopen09g002060 Solanum pennellii HOM05D007024 ORTHO05D008865 1.1e-17 94.4 186 31.2
Oeu029107.1 Olea europaea HOM05D007024 ORTHO05D008865 1.5e-17 94.0 186 29.6
CAN.G350.48 Capsicum annuum HOM05D007024 ORTHO05D008865 2.0e-17 93.6 187 31.6
Migut.L01652 Erythranthe guttata HOM05D007024 ORTHO05D008865 2.5e-17 93.2 186 30.1
Aqoxy4G03151 Aquilegia oxysepala HOM05D007024 ORTHO05D008865 3.3e-17 92.8 184 28.8
Lalb_Chr20g0112901 Lupinus albus HOM05D007024 ORTHO05D008865 3.3e-17 92.8 179 31.3
Peaxi162Scf01517g00138 Petunia axillaris HOM05D007024 ORTHO05D008865 3.3e-17 92.8 186 29.6
unitig_746.g26783 Utricularia gibba HOM05D007024 ORTHO05D008865 5.7e-17 92.0 183 30.6
Potri.007G007201 Populus trichocarpa HOM05D004917 ORTHO05D005954 2.2e-16 90.1 69 66.7
Zm00001eb030360 Zea mays HOM05D004917 ORTHO05D005954 1.4e-15 87.4 89 57.3
Sabra07G0005500 Salix brachista HOM05D004917 ORTHO05D005954 1.8e-15 87.0 94 55.3
PRCOL_00004664 Prasinoderma coloniale HOM05D004917 ORTHO05D005954 2.6e-14 83.2 133 38.3
MCO06G061 Micromonas commoda HOM05D004917 ORTHO05D005954 3.8e-13 79.3 133 34.6
arahy.Tifrunner.gnm1.ann1.F27BB1 Arachis hypogaea HOM05D004917 ORTHO05D005954 5.0e-13 79.0 49 75.5
MCO07G374 Micromonas commoda HOM05D004917 ORTHO05D005954 5.0e-13 79.0 119 41.2
PGSC0003DMG400027897 Solanum tuberosum HOM05D007024 ORTHO05D008865 6.5e-13 78.6 124 34.7
Mapoly0154s0013 Marchantia polymorpha HOM05D007024 ORTHO05D008865 1.1e-12 77.8 182 30.2
TAR633G0628 Trochodendron aralioides HOM05D007024 ORTHO05D008865 1.4e-12 77.4 143 30.1
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 2.5e-12 76.6 117 33.3
Cre17.g697050 Chlamydomonas reinhardtii HOM05D004917 ORTHO05D005954 4.2e-12 75.9 114 39.5
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 1.6e-11 73.9 117 36.8
SGA_v2.0_scaffold94G28656 Striga asiatica HOM05D007024 ORTHO05D008865 1.1e-09 67.8 110 33.6
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 2.8e-08 63.2 128 29.7
Gohir.A12G080465 Gossypium hirsutum HOM05D004917 ORTHO05D005954 1.2e-06 57.8 57 52.6
Haze_02356 Corylus avellana HOM05D004917 ORTHO05D005954 1.5e-06 57.4 38 71.1
Mapoly0013s0125 Marchantia polymorpha HOM05D016606 ORTHO05D018318 2.6e-06 56.6 194 25.3
SEGI_25621 Sequoiadendron giganteum HOM05D007024 ORTHO05D008865 4.5e-06 55.8 94 33.0


User provided reference genes

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