Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 0.0e+00 1246.9 622 100.0
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 1.5e-203 713.4 468 73.3
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 5.9e-203 711.4 470 73.2
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 2.9e-202 709.1 468 73.3
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 9.3e-201 704.1 468 72.2
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 4.6e-200 701.8 471 71.3
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 7.9e-200 701.0 474 73.0
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 5.1e-199 698.4 508 66.5
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 6.7e-199 698.0 474 71.7
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 6.7e-199 698.0 467 72.6
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 8.7e-199 697.6 468 71.4
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 3.3e-198 695.7 467 72.2
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 4.3e-198 695.3 468 72.2
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 5.7e-198 694.9 477 71.3
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 7.4e-198 694.5 470 71.3
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 2.2e-197 693.0 469 71.2
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.8e-197 692.6 473 70.4
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 2.8e-197 692.6 465 70.5
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 3.7e-197 692.2 477 70.4
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 3.7e-197 692.2 467 71.9
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 8.2e-197 691.0 471 70.5
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.4e-196 689.5 467 71.5
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 3.1e-196 689.1 468 71.2
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 4.1e-196 688.7 473 71.0
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 9.1e-196 687.6 470 70.2
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 9.1e-196 687.6 471 70.9
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 1.2e-195 687.2 468 69.9
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.2e-195 687.2 472 69.9
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.5e-195 686.8 472 70.1
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 1.5e-195 686.8 465 71.6
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 5.9e-195 684.9 468 70.5
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 5.9e-195 684.9 467 71.1
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 1.0e-194 684.1 467 70.9
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.3e-194 683.7 468 70.1
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 1.3e-194 683.7 473 69.1
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 3.8e-194 682.2 468 69.4
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 5.0e-194 681.8 470 69.1
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 6.5e-194 681.4 463 70.2
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 6.5e-194 681.4 470 70.2
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 1.9e-193 679.9 467 70.2
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 1.9e-193 679.9 462 72.3
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 2.5e-193 679.5 492 67.7
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 9.4e-193 677.6 488 68.0
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 1.2e-192 677.2 468 70.3
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 3.9e-191 672.2 470 69.1
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 5.1e-191 671.8 475 69.5
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 1.1e-190 670.6 469 68.7
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 2.0e-190 669.8 462 70.1
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 2.0e-190 669.8 481 66.9
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 4.4e-190 668.7 469 69.1
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 4.4e-190 668.7 466 69.1
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 7.4e-190 667.9 466 68.7
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 6.3e-189 664.8 468 67.5
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 6.3e-189 664.8 468 69.2
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 2.4e-188 662.9 445 71.7
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 3.1e-188 662.5 465 69.2
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 1.2e-187 660.6 465 69.0
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 3.4e-187 659.1 465 69.0
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 1.0e-186 657.5 451 70.5
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 1.7e-186 656.8 487 66.9
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 1.1e-185 654.1 466 69.7
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 8.8e-183 644.4 466 66.7
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 8.8e-183 644.4 469 68.4
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.5e-182 643.7 437 70.3
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 4.4e-182 642.1 468 67.3
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 4.4e-182 642.1 470 66.6
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 4.4e-182 642.1 475 67.2
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 5.7e-182 641.7 463 66.3
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 5.7e-182 641.7 462 66.9
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 2.8e-181 639.4 472 66.3
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 2.8e-181 639.4 545 60.0
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 4.8e-181 638.6 428 72.7
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 8.2e-181 637.9 442 69.5
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 1.1e-180 637.5 468 66.7
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 1.1e-180 637.5 468 66.5
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 1.1e-180 637.5 474 66.2
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 2.4e-180 636.3 461 67.5
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 1.2e-179 634.0 473 67.0
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 2.0e-179 633.3 462 67.1
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 2.6e-179 632.9 468 66.2
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 3.5e-179 632.5 463 67.0
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 3.5e-179 632.5 461 67.2
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 5.9e-179 631.7 484 64.3
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.3e-178 630.6 464 67.0
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 1.7e-178 630.2 462 66.7
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 5.0e-178 628.6 473 66.6
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 6.5e-178 628.2 462 67.1
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 4.2e-177 625.5 462 66.5
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 9.4e-177 624.4 473 65.5
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 9.4e-177 624.4 473 65.5
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 1.2e-176 624.0 467 65.3
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 8.0e-176 621.3 452 68.1
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 2.3e-175 619.8 469 66.3
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 6.7e-175 618.2 470 66.2
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 8.8e-175 617.8 426 70.0
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.3e-174 615.9 471 65.4
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 4.4e-174 615.5 471 66.0
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 6.3e-173 611.7 462 65.2
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 4.1e-172 609.0 399 72.2
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 5.3e-172 608.6 468 65.0
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 2.0e-171 606.7 510 59.4
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 7.7e-171 604.7 476 64.1
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.7e-170 603.6 463 64.8
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.1e-169 600.9 474 62.7
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 6.8e-167 591.7 518 59.1
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 9.8e-166 587.8 433 65.6
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 3.5e-163 579.3 483 61.1
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 3.7e-157 559.3 472 61.7
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 3.7e-157 559.3 464 61.0
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 4.1e-156 555.8 459 63.6
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 1.6e-155 553.9 399 65.9
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 3.6e-152 542.7 361 70.1
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.8e-151 540.4 407 64.1
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.7e-149 532.7 350 71.4
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.4e-148 530.8 465 59.4
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 2.8e-144 516.5 463 55.9
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.7e-141 507.3 358 67.6
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 2.8e-136 490.0 544 48.5
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.3e-129 466.1 467 52.7
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 9.9e-118 428.3 462 50.4
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 1.6e-107 394.4 305 63.0
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 8.4e-101 372.1 269 65.4
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.4e-100 371.3 322 61.2
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 3.0e-98 363.6 249 71.9
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 2.2e-93 347.4 476 44.5
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 5.1e-82 309.7 197 73.6
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 1.1e-81 308.5 270 55.6
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 9.7e-81 305.4 278 59.7
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 2.0e-78 297.7 384 43.5
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 4.5e-78 296.6 476 38.2
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 4.4e-73 280.0 507 37.1
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 2.2e-72 277.7 268 56.7
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 9.4e-68 262.3 459 38.6
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.1e-65 255.4 248 56.0
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 5.0e-61 240.0 453 36.0
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 5.5e-52 209.9 174 60.3
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 6.1e-51 206.5 178 55.6
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.0e-50 204.1 289 43.6
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 1.3e-48 198.7 203 52.2
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 1.4e-47 195.3 195 52.8
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.3e-45 188.0 110 73.6
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.5e-44 184.5 110 71.8
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 5.5e-44 183.3 110 72.7
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 1.3e-40 172.2 197 49.7
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 2.7e-38 164.5 105 72.4
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 5.6e-36 156.8 128 60.2
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.8e-35 154.5 110 63.6
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 2.0e-33 148.3 116 61.2
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 2.9e-32 144.4 110 66.4
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 4.9e-32 143.7 119 59.7
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 2.7e-30 137.9 91 69.2
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 5.0e-29 133.7 313 30.7
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.3e-28 130.6 67 92.5
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 3.5e-22 110.9 125 52.0
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 1.1e-20 105.9 64 76.6
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 6.0e-14 83.6 63 63.5
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 1.7e-13 82.0 58 69.0
ATR0021G034 Amborella trichopoda HOM05D000271 ORTHO05D002152 1.2e-11 75.9 152 37.5
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 2.6e-09 68.2 42 81.0
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 3.2e-07 61.2 40 75.0
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 7.1e-07 60.1 40 72.5


User provided reference genes

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