Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0739G089 Amborella trichopoda HOM05D007224 ORTHO05D009169 2.8e-140 501.9 250 100.0
Ciclev10002194m.g Citrus clementina HOM05D007224 ORTHO05D009169 3.4e-69 265.8 184 71.7
Atru.chr13.874 Acer truncatum HOM05D007224 ORTHO05D009169 3.8e-68 262.3 185 72.4
CsaV3_2G025920 Cucumis sativus L. HOM05D007224 ORTHO05D009169 3.2e-67 259.2 263 57.0
MELO3C010785.2 Cucumis melo HOM05D007224 ORTHO05D009169 2.1e-66 256.5 249 57.0
Gorai.010G028000 Gossypium raimondii HOM05D007224 ORTHO05D009169 6.0e-66 255.0 185 67.0
Duzib116G0584 Durio zibethinus HOM05D007224 ORTHO05D009169 7.9e-66 254.6 185 67.0
Gohir.A06G026200 Gossypium hirsutum HOM05D007224 ORTHO05D009169 7.9e-66 254.6 185 66.5
Gohir.D06G023300 Gossypium hirsutum HOM05D007224 ORTHO05D009169 7.9e-66 254.6 185 66.5
GSVIVG01009296001 Vitis vinifera HOM05D007224 ORTHO05D009169 3.9e-65 252.3 182 70.3
THA.LOC104799830 Tarenaya hassleriana HOM05D007224 ORTHO05D009169 5.1e-65 251.9 187 68.4
MD08G1077300 Malus domestica HOM05D007224 ORTHO05D009169 1.1e-64 250.8 185 67.0
MD15G1064800 Malus domestica HOM05D007224 ORTHO05D009169 1.1e-64 250.8 185 66.5
TWI12G0175 Tripterygium wilfordii HOM05D007224 ORTHO05D009169 3.3e-64 249.2 186 67.7
RcHm_v2.0_Chr6g0310081 Rosa chinensis HOM05D007224 ORTHO05D009169 7.4e-64 248.1 187 65.8
CDE04G2175 Ceratophyllum demersum HOM05D007224 ORTHO05D009169 9.6e-64 247.7 184 65.2
Zm00001eb056020 Zea mays HOM05D007224 ORTHO05D009169 9.6e-64 247.7 211 61.1
FvH4_2g32650 Fragaria vesca HOM05D007224 ORTHO05D009169 1.6e-63 246.9 179 68.7
TWI56G1112 Tripterygium wilfordii HOM05D007224 ORTHO05D009169 4.8e-63 245.4 184 66.8
HanXRQChr04g0110471 Helianthus annuus HOM05D007224 ORTHO05D009169 8.1e-63 244.6 186 66.7
Solyc04g077500.4 Solanum lycopersicum HOM05D007224 ORTHO05D009169 1.1e-62 244.2 188 68.1
Sopen04g031100 Solanum pennellii HOM05D007224 ORTHO05D009169 1.1e-62 244.2 188 67.6
ClCG08G016710 Citrullus lanatus HOM05D007224 ORTHO05D009169 1.8e-62 243.4 253 55.7
PSO541G3785 Papaver somniferum HOM05D007224 ORTHO05D009169 1.8e-62 243.4 248 54.0
CiPaw.07G171700 Carya illinoinensis HOM05D007224 ORTHO05D009169 3.1e-62 242.7 265 54.3
PSO675G4824 Papaver somniferum HOM05D007224 ORTHO05D009169 4.0e-62 242.3 181 65.7
AL1G52590 Arabidopsis lyrata HOM05D007224 ORTHO05D009169 5.3e-62 241.9 204 59.8
Nitab4.5_0001494g0030 Nicotiana tabacum HOM05D007224 ORTHO05D009169 5.3e-62 241.9 190 65.3
Sc26g0004240 Simmondsia chinensis HOM05D007224 ORTHO05D009169 5.3e-62 241.9 185 65.9
AT1G44920 Arabidopsis thaliana HOM05D007224 ORTHO05D009169 6.9e-62 241.5 188 63.3
Thhalv10011734m.g Eutrema salsugineum HOM05D007224 ORTHO05D009169 2.0e-61 240.0 184 63.0
Sp1g33790 Schrenkiella parvula HOM05D007224 ORTHO05D009169 2.0e-61 240.0 184 62.5
BcaC08g42889 Brassica carinata HOM05D007224 ORTHO05D009169 2.6e-61 239.6 184 63.0
CAN.G1239.16 Capsicum annuum HOM05D007224 ORTHO05D009169 4.5e-61 238.8 188 64.4
CANSAT56G0920 Cannabis sativa HOM05D007224 ORTHO05D009169 5.8e-61 238.4 278 52.2
PGSC0003DMG400004920 Solanum tuberosum HOM05D007224 ORTHO05D009169 7.6e-61 238.0 188 65.4
A10p07160 Brassica napus HOM05D007224 ORTHO05D009169 2.2e-60 236.5 184 62.0
CARHR036150 Cardamine hirsuta HOM05D007224 ORTHO05D009169 2.2e-60 236.5 185 62.2
Ca_06981_v3 Cicer arietinum L. HOM05D007224 ORTHO05D009169 2.2e-60 236.5 185 64.3
Actinidia10224 Actinidia chinensis HOM05D007224 ORTHO05D009169 6.5e-60 235.0 237 56.5
HPP92_007712 Vanilla planifolia HOM05D007224 ORTHO05D009169 6.5e-60 235.0 185 61.1
vmacro21415 Vaccinium macrocarpon HOM05D007224 ORTHO05D009169 8.4e-60 234.6 195 63.6
Carub.0001s3542 Capsella rubella HOM05D007224 ORTHO05D009169 1.1e-59 234.2 204 57.4
DCAR_009866 Daucus carota HOM05D007224 ORTHO05D009169 1.1e-59 234.2 171 66.7
FAN15G3290 Fragaria x ananassa HOM05D007224 ORTHO05D009169 1.1e-59 234.2 187 62.6
FAN20G0095 Fragaria x ananassa HOM05D007224 ORTHO05D009169 1.4e-59 233.8 184 63.6
Lj5g0004917 Lotus japonicus HOM05D007224 ORTHO05D009169 1.4e-59 233.8 192 63.5
CSS0049759 Camellia sinensis var. sinensis HOM05D007224 ORTHO05D009169 1.9e-59 233.4 179 67.6
FAN27G0962 Fragaria x ananassa HOM05D007224 ORTHO05D009169 1.9e-59 233.4 244 52.5
Ah.11g039150 Amaranthus hybridus HOM05D007224 ORTHO05D009169 2.5e-59 233.0 184 63.6
TPR.G13169 Trifolium pratense HOM05D007224 ORTHO05D009169 4.2e-59 232.3 235 54.0
Cfa013733 Carpinus fangiana HOM05D007224 ORTHO05D009169 5.5e-59 231.9 261 52.1
Hund05274 Selenicereus undatus HOM05D007224 ORTHO05D009169 7.1e-59 231.5 259 54.1
PGR083G2708 Punica granatum HOM05D007224 ORTHO05D009169 9.3e-59 231.1 179 65.4
FAN24G0100 Fragaria x ananassa HOM05D007224 ORTHO05D009169 1.2e-58 230.7 175 65.1
MSTRG.22207 Avicennia marina HOM05D007224 ORTHO05D009169 2.1e-58 229.9 186 64.0
Lj4A752T19 Lonicera japonica HOM05D007224 ORTHO05D009169 3.5e-58 229.2 198 60.1
Thecc.08G084200 Theobroma cacao HOM05D007224 ORTHO05D009169 4.6e-58 228.8 186 62.4
unitig_52.g17426 Utricularia gibba HOM05D007224 ORTHO05D009169 6.0e-58 228.4 197 59.9
Psat6g017040 Pisum sativum HOM05D007224 ORTHO05D009169 1.0e-57 227.6 185 61.1
Nn5g30669 Nelumbo nucifera HOM05D007224 ORTHO05D009169 1.3e-57 227.3 185 60.5
Rhsim06G0064800 Rhododendron simsii HOM05D007224 ORTHO05D009169 1.8e-57 226.9 259 51.7
BolC6t35243H Brassica oleracea HOM05D007224 ORTHO05D009169 3.0e-57 226.1 202 56.9
Os03g0729100 Oryza sativa ssp. japonica HOM05D007224 ORTHO05D009169 3.9e-57 225.7 175 63.4
BcaB07g33899 Brassica carinata HOM05D007224 ORTHO05D009169 6.7e-57 224.9 184 60.3
SalBow7G4028 Salvia bowleyana HOM05D007224 ORTHO05D009169 1.5e-56 223.8 188 63.8
C06p01100 Brassica napus HOM05D007224 ORTHO05D009169 4.3e-56 222.2 175 61.1
MBI16_g06074_MAGBIO Magnolia biondii HOM05D007224 ORTHO05D009169 9.6e-56 221.1 256 49.6
Dinv44928 Davidia involucrata HOM05D007224 ORTHO05D009169 1.3e-55 220.7 184 63.6
Prupe.1G418700 Prunus persica HOM05D007224 ORTHO05D009169 6.3e-55 218.4 185 60.0
EL10Ac1g02348 Beta vulgaris HOM05D007224 ORTHO05D009169 1.1e-54 217.6 185 60.0
Potri.002G114900 Populus trichocarpa HOM05D007224 ORTHO05D009169 1.1e-54 217.6 181 63.0
Manes.18G049850 Manihot esculenta HOM05D007224 ORTHO05D009169 1.8e-54 216.9 184 60.3
TAR628G0831 Trochodendron aralioides HOM05D007224 ORTHO05D009169 1.8e-54 216.9 177 61.0
Aa31LG7G10090 Aethionema arabicum HOM05D007224 ORTHO05D009169 3.1e-54 216.1 206 55.8
Medtr1g017450 Medicago truncatula HOM05D007224 ORTHO05D009169 4.1e-54 215.7 177 61.6
Lalb_Chr22g0355811 Lupinus albus HOM05D007224 ORTHO05D009169 5.3e-54 215.3 238 50.4
Glyma.17G232300 Glycine max HOM05D007224 ORTHO05D009169 6.9e-54 214.9 184 58.7
Aqoxy6G02448 Aquilegia oxysepala HOM05D007224 ORTHO05D009169 2.6e-53 213.0 252 47.6
Lsat_1_v5_gn_0_47281 Lactuca sativa HOM05D007224 ORTHO05D009169 5.9e-53 211.8 234 48.7
BraA10t42965Z Brassica rapa HOM05D007224 ORTHO05D009169 7.6e-53 211.5 200 54.0
Phvul.001G031100 Phaseolus vulgaris HOM05D007224 ORTHO05D009169 7.6e-53 211.5 185 57.8
Peaxi162Scf01161g00120 Petunia axillaris HOM05D007224 ORTHO05D009169 2.2e-52 209.9 188 59.0
Haze_22381 Corylus avellana HOM05D007224 ORTHO05D009169 2.9e-52 209.5 251 50.6
Migut.C00453 Erythranthe guttata HOM05D007224 ORTHO05D009169 2.9e-52 209.5 260 48.8
VMungo0647G2475 Vigna mungo HOM05D007224 ORTHO05D009169 2.9e-52 209.5 181 59.1
Cc10_g07670 Coffea canephora HOM05D007224 ORTHO05D009169 3.8e-52 209.1 181 61.9
COL.COLO4_28456 Corchorus olitorius HOM05D007224 ORTHO05D009169 3.2e-51 206.1 190 56.3
ECA232G4225 Erigeron canadensis HOM05D007224 ORTHO05D009169 1.6e-50 203.8 138 68.8
SGA_v2.0_scaffold238G43907 Striga asiatica HOM05D007224 ORTHO05D009169 2.7e-50 203.0 224 52.2
Nitab4.5_0010252g0010 Nicotiana tabacum HOM05D007224 ORTHO05D009169 4.3e-48 195.7 181 57.5
SMO147G0155 Selaginella moellendorffii HOM05D007224 ORTHO05D009169 1.6e-47 193.7 178 55.1
Mapoly0039s0075 Marchantia polymorpha HOM05D007224 ORTHO05D009169 6.3e-47 191.8 176 56.8
Sabra02G0090900 Salix brachista HOM05D007224 ORTHO05D009169 8.2e-47 191.4 313 40.9
arahy.Tifrunner.gnm1.ann1.TQ0B6U Arachis hypogaea HOM05D007224 ORTHO05D009169 1.4e-46 190.7 190 54.7
Pp3c6_15140 Physcomitrium patens HOM05D007224 ORTHO05D009169 6.7e-41 171.8 263 40.7
CBR_g45556 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-38 163.7 176 48.9
CDE07G0245 Ceratophyllum demersum HOM05D007224 ORTHO05D009169 5.3e-38 162.2 153 54.9
Actinidia19293 Actinidia chinensis HOM05D007224 ORTHO05D009169 2.6e-37 159.8 125 65.6
arahy.Tifrunner.gnm1.ann1.XZQ8AB Arachis hypogaea HOM05D007224 ORTHO05D009169 7.2e-35 151.8 171 49.7
Cre13.g569250 Chlamydomonas reinhardtii HOM05D007224 ORTHO05D009169 6.7e-33 145.2 191 45.5
Sed0020426 Sechium edule HOM05D007224 ORTHO05D009169 2.2e-31 140.2 116 61.2
Glyma.14G089100 Glycine max HOM05D007224 ORTHO05D009169 1.7e-28 130.6 91 70.3
AUR62024535 Chenopodium quinoa HOM05D007224 ORTHO05D009169 4.2e-27 125.9 81 72.8
Haze_22389 Corylus avellana HOM05D007224 ORTHO05D009169 2.1e-26 123.6 184 43.5
AUR62033890 Chenopodium quinoa HOM05D007224 ORTHO05D009169 4.7e-26 122.5 103 60.2
Zm00001eb035950 Zea mays HOM05D007224 ORTHO05D009169 2.6e-24 116.7 76 69.7
MCO05G240 Micromonas commoda HOM05D007224 ORTHO05D009169 4.1e-22 109.4 152 40.8
Zm00001eb141580 Zea mays HOM05D007224 ORTHO05D445531 4.0e-17 92.8 198 35.9
Cpa.g.sc2059.2 Carica papaya HOM05D007224 ORTHO05D009169 8.3e-15 85.1 75 58.7
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 4.7e-10 69.3 57 63.2


User provided reference genes

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