Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0739G008 Amborella trichopoda HOM05D007406 ORTHO05D009434 2.8e-115 418.7 220 100.0
Actinidia10229 Actinidia chinensis HOM05D007406 ORTHO05D009434 1.2e-73 280.4 200 69.0
Potri.002G114400 Populus trichocarpa HOM05D007406 ORTHO05D009434 7.6e-73 277.7 218 64.2
TAR628G0119 Trochodendron aralioides HOM05D007406 ORTHO05D009434 1.3e-72 276.9 216 66.2
Cpa.g.sc160.29 Carica papaya HOM05D007406 ORTHO05D009434 1.1e-71 273.9 213 65.3
TWI36G1291 Tripterygium wilfordii HOM05D007406 ORTHO05D009434 1.9e-71 273.1 217 64.5
DCAR_020070 Daucus carota HOM05D007406 ORTHO05D009434 2.5e-71 272.7 220 64.1
HanXRQChr08g0226371 Helianthus annuus HOM05D007406 ORTHO05D009434 2.5e-71 272.7 211 64.0
CANSAT25G0188 Cannabis sativa HOM05D007406 ORTHO05D009434 4.2e-71 271.9 216 64.8
RcHm_v2.0_Chr6g0310141 Rosa chinensis HOM05D007406 ORTHO05D009434 7.2e-71 271.2 218 63.8
FAN24G2334 Fragaria x ananassa HOM05D007406 ORTHO05D009434 1.6e-70 270.0 218 63.8
Sed0009876 Sechium edule HOM05D007406 ORTHO05D009434 1.6e-70 270.0 216 64.4
CiPaw.08G053000 Carya illinoinensis HOM05D007406 ORTHO05D009434 2.1e-70 269.6 209 67.5
Hma1.2p1_1926F.1_g307730 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 3.6e-70 268.9 216 66.7
ClCG05G017610 Citrullus lanatus HOM05D007406 ORTHO05D009434 1.0e-69 267.3 214 65.9
Cfa013727 Carpinus fangiana HOM05D007406 ORTHO05D009434 1.3e-69 266.9 212 64.6
Nn6g34540 Nelumbo nucifera HOM05D007406 ORTHO05D009434 1.3e-69 266.9 216 62.5
Ciclev10002365m.g Citrus clementina HOM05D007406 ORTHO05D009434 1.8e-69 266.5 217 63.1
FvH4_2g32510 Fragaria vesca HOM05D007406 ORTHO05D009434 2.3e-69 266.2 218 62.8
Lsat_1_v5_gn_1_721 Lactuca sativa HOM05D007406 ORTHO05D009434 2.3e-69 266.2 197 68.5
MD15G1064200 Malus domestica HOM05D007406 ORTHO05D009434 3.0e-69 265.8 211 64.0
Manes.18G050400 Manihot esculenta HOM05D007406 ORTHO05D009434 3.9e-69 265.4 217 63.6
Prupe.1G418200 Prunus persica HOM05D007406 ORTHO05D009434 3.9e-69 265.4 218 61.5
Thecc.08G083300 Theobroma cacao HOM05D007406 ORTHO05D009434 5.1e-69 265.0 215 62.3
MELO3C016844.2 Cucumis melo HOM05D007406 ORTHO05D009434 6.7e-69 264.6 217 63.6
Aqoxy6G02928 Aquilegia oxysepala HOM05D007406 ORTHO05D009434 1.1e-68 263.8 216 62.5
Migut.N02801 Erythranthe guttata HOM05D007406 ORTHO05D009434 1.1e-68 263.8 215 61.4
ECA247G1434 Erigeron canadensis HOM05D007406 ORTHO05D009434 3.3e-68 262.3 217 62.7
FAN27G1006 Fragaria x ananassa HOM05D007406 ORTHO05D009434 3.3e-68 262.3 217 61.8
Atru.chr13.879 Acer truncatum HOM05D007406 ORTHO05D009434 7.4e-68 261.2 216 62.5
vmacro21408 Vaccinium macrocarpon HOM05D007406 ORTHO05D009434 7.4e-68 261.2 240 59.6
Eucgr.F02216 Eucalyptus grandis HOM05D007406 ORTHO05D009434 2.8e-67 259.2 216 60.6
arahy.Tifrunner.gnm1.ann1.GL3N7R Arachis hypogaea HOM05D007406 ORTHO05D009434 3.7e-67 258.8 220 60.5
Ca_06987_v3 Cicer arietinum L. HOM05D007406 ORTHO05D009434 3.7e-67 258.8 220 61.4
Gohir.A02G079900 Gossypium hirsutum HOM05D007406 ORTHO05D009434 3.7e-67 258.8 215 60.9
PSO017G2718 Papaver somniferum HOM05D007406 ORTHO05D009434 3.7e-67 258.8 213 61.5
Duzib041G0608 Durio zibethinus HOM05D007406 ORTHO05D009434 4.8e-67 258.5 215 61.4
TPR.G13149 Trifolium pratense HOM05D007406 ORTHO05D009434 6.3e-67 258.1 219 61.6
Gorai.005G098400 Gossypium raimondii HOM05D007406 ORTHO05D009434 8.2e-67 257.7 215 60.9
Lalb_Chr14g0368031 Lupinus albus HOM05D007406 ORTHO05D009434 8.2e-67 257.7 219 59.8
Prupe.6G207800 Prunus persica HOM05D007406 ORTHO05D009434 8.2e-67 257.7 207 63.3
Glyma.14G090300 Glycine max HOM05D007406 ORTHO05D009434 1.1e-66 257.3 220 61.8
Gohir.D02G087800 Gossypium hirsutum HOM05D007406 ORTHO05D009434 1.1e-66 257.3 215 60.9
PGR031G1333 Punica granatum HOM05D007406 ORTHO05D009434 1.1e-66 257.3 224 61.6
THA.LOC104799833 Tarenaya hassleriana HOM05D007406 ORTHO05D009434 1.1e-66 257.3 212 62.3
Medtr1g017290 Medicago truncatula HOM05D007406 ORTHO05D009434 2.4e-66 256.1 221 60.6
AT3G12210 Arabidopsis thaliana HOM05D007406 ORTHO05D009434 3.1e-66 255.8 211 63.5
VMungo0647G2305 Vigna mungo HOM05D007406 ORTHO05D009434 3.1e-66 255.8 220 60.5
SalBow2G1084 Salvia bowleyana HOM05D007406 ORTHO05D009434 5.3e-66 255.0 215 58.6
Phvul.001G031500 Phaseolus vulgaris HOM05D007406 ORTHO05D009434 6.9e-66 254.6 225 60.9
Lj5g0009058 Lotus japonicus HOM05D007406 ORTHO05D009434 1.2e-65 253.8 220 60.5
Thhalv10021516m.g Eutrema salsugineum HOM05D007406 ORTHO05D009434 2.0e-65 253.1 209 61.2
Sp3g10440 Schrenkiella parvula HOM05D007406 ORTHO05D009434 3.4e-65 252.3 211 61.1
BraA05t22509Z Brassica rapa HOM05D007406 ORTHO05D009434 4.5e-65 251.9 212 60.4
Cc10_g07740 Coffea canephora HOM05D007406 ORTHO05D009434 4.5e-65 251.9 213 61.0
Zm00001eb215640 Zea mays HOM05D007406 ORTHO05D009434 7.7e-65 251.1 211 61.6
AL3G23880 Arabidopsis lyrata HOM05D007406 ORTHO05D009434 1.3e-64 250.4 211 61.6
MSTRG.22203 Avicennia marina HOM05D007406 ORTHO05D009434 1.3e-64 250.4 215 59.1
BolC5t34221H Brassica oleracea HOM05D007406 ORTHO05D009434 1.3e-64 250.4 212 60.4
CSS0019783 Camellia sinensis var. sinensis HOM05D007406 ORTHO05D009434 1.7e-64 250.0 167 73.7
Carub.0003s1158 Capsella rubella HOM05D007406 ORTHO05D009434 1.7e-64 250.0 210 61.4
Haze_22374 Corylus avellana HOM05D007406 ORTHO05D009434 2.2e-64 249.6 240 57.1
Sopen04g031040 Solanum pennellii HOM05D007406 ORTHO05D009434 2.9e-64 249.2 213 60.6
MBI16_g35726_MAGBIO Magnolia biondii HOM05D007406 ORTHO05D009434 8.5e-64 247.7 227 57.3
Solyc04g077450.3 Solanum lycopersicum HOM05D007406 ORTHO05D009434 4.2e-63 245.4 213 60.1
CAN.G416.4 Capsicum annuum HOM05D007406 ORTHO05D009434 5.5e-63 245.0 213 59.2
arahy.Tifrunner.gnm1.ann1.V0H9ZK Arachis hypogaea HOM05D007406 ORTHO05D009434 2.1e-62 243.0 220 57.7
Rhsim06G0065300 Rhododendron simsii HOM05D007406 ORTHO05D009434 6.1e-62 241.5 167 71.9
PSO170G2494 Papaver somniferum HOM05D007406 ORTHO05D009434 3.0e-61 239.2 183 64.5
Hund05268 Selenicereus undatus HOM05D007406 ORTHO05D009434 3.9e-61 238.8 215 59.1
Sabra02G0090500 Salix brachista HOM05D000717 ORTHO05D000555 6.7e-61 238.0 167 70.1
SGA_v2.0_scaffold28G11843 Striga asiatica HOM05D007406 ORTHO05D009434 1.1e-60 237.3 213 55.9
Aa31LG11G6470 Aethionema arabicum HOM05D007406 ORTHO05D009434 2.0e-60 236.5 211 57.3
EL10Ac1g02342 Beta vulgaris HOM05D007406 ORTHO05D009434 5.7e-60 235.0 218 58.7
AUR62034986 Chenopodium quinoa HOM05D007406 ORTHO05D009434 2.8e-59 232.6 216 59.3
Ah.05g166920 Amaranthus hybridus HOM05D007406 ORTHO05D009434 3.7e-59 232.3 216 58.3
CsaV3_4G035340 Cucumis sativus L. HOM05D007406 ORTHO05D009434 1.8e-58 229.9 167 67.7
SEGI_23576 Sequoiadendron giganteum HOM05D007406 ORTHO05D009434 1.8e-58 229.9 231 54.5
Oeu053653.1 Olea europaea HOM05D007406 ORTHO05D009434 2.6e-57 226.1 170 64.1
BcaC05g29272 Brassica carinata HOM05D007406 ORTHO05D009434 1.0e-56 224.2 168 64.9
Nitab4.5_0007871g0020 Nicotiana tabacum HOM05D007406 ORTHO05D009434 1.4e-55 220.3 214 56.5
Pp3c10_2700 Physcomitrium patens HOM05D007406 ORTHO05D009434 5.5e-55 218.4 224 51.3
COL.COLO4_28451 Corchorus olitorius HOM05D007406 ORTHO05D009434 9.4e-55 217.6 194 57.2
Lj4C76T9 Lonicera japonica HOM05D007406 ORTHO05D009434 6.1e-54 214.9 155 70.3
GSVIVG01009288001 Vitis vinifera HOM05D007406 ORTHO05D009434 1.2e-49 200.7 151 68.9
CARHR086780 Cardamine hirsuta HOM05D007406 ORTHO05D009434 5.0e-48 195.3 139 67.6
CDE04G3630 Ceratophyllum demersum HOM05D007406 ORTHO05D009434 3.2e-47 192.6 141 66.0
Peaxi162Scf01161g00328 Petunia axillaris HOM05D007406 ORTHO05D009434 5.7e-44 181.8 213 46.9
AUR62039350 Chenopodium quinoa HOM05D007406 ORTHO05D009434 1.6e-41 173.7 139 67.6
Sc15g0005330 Simmondsia chinensis HOM05D007406 ORTHO05D009434 1.6e-38 163.7 136 58.8
A05p37120 Brassica napus HOM05D007406 ORTHO05D004372 1.5e-36 157.1 140 62.1
C05p55550 Brassica napus HOM05D007406 ORTHO05D004372 4.4e-36 155.6 140 62.1
Nitab4.5_0001494g0090 Nicotiana tabacum HOM05D007406 ORTHO05D009434 7.0e-34 148.3 214 41.6
Aa31sc118G30 Aethionema arabicum HOM05D007406 ORTHO05D009434 3.6e-22 109.4 95 62.1
Hma1.2p1_1926F.1_g307740 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 8.0e-22 108.2 78 71.8
Hma1.2p1_2378F.1_g320925 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 8.0e-22 108.2 78 71.8
MCO14G094 Micromonas commoda HOM05D007406 ORTHO05D009434 9.2e-18 94.7 204 32.8
Dinv39200 Davidia involucrata HOM05D007406 ORTHO05D009434 3.9e-16 89.4 61 72.1
Os03g0728600 Oryza sativa ssp. japonica HOM05D007406 ORTHO05D009434 3.9e-16 89.4 77 50.6
Psat0s3650g0120 Pisum sativum HOM05D007406 ORTHO05D009434 5.0e-16 89.0 59 72.9
PRCOL_00000641 Prasinoderma coloniale HOM05D007406 ORTHO05D009434 2.1e-14 83.6 163 38.0
Cre10.g466400 Chlamydomonas reinhardtii HOM05D007406 ORTHO05D009434 1.8e-13 80.5 157 36.9
Sc15g0005340 Simmondsia chinensis HOM05D007406 ORTHO05D009434 2.7e-09 66.6 77 50.6
CDE04G2918 Ceratophyllum demersum HOM05D007406 ORTHO05D009434 6.2e-06 55.5 43 60.5


User provided reference genes

Program Settings