Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0737G149 Amborella trichopoda HOM05D003240 ORTHO05D009426 3.9e-48 194.9 92 100.0
MBI07_g30192_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 7.8e-25 117.5 76 68.4
MBI06_g23076_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 1.0e-24 117.1 94 61.7
Aqoxy1G02389 Aquilegia oxysepala HOM05D003240 ORTHO05D009426 3.4e-20 102.1 76 57.9
Eucgr.F01147 Eucalyptus grandis HOM05D003240 ORTHO05D009426 1.9e-18 96.3 80 60.0
TWI38G1889 Tripterygium wilfordii HOM05D003240 ORTHO05D009426 5.4e-18 94.7 84 52.4
Cpa.g.sc80.73 Carica papaya HOM05D003240 ORTHO05D009426 9.2e-18 94.0 64 67.2
Oeu019313.1 Olea europaea HOM05D003240 ORTHO05D009426 1.6e-17 93.2 67 68.7
TAR627G0347 Trochodendron aralioides HOM05D003240 ORTHO05D009426 2.1e-17 92.8 69 59.4
Atru.chr2.2486 Acer truncatum HOM05D003240 ORTHO05D009426 2.7e-17 92.4 88 52.3
PGR083G0779 Punica granatum HOM05D003240 ORTHO05D009426 2.7e-17 92.4 68 60.3
MD03G1228400 Malus domestica HOM05D003240 ORTHO05D009426 3.5e-17 92.0 65 61.5
Duzib213G1023 Durio zibethinus HOM05D003240 ORTHO05D009426 1.0e-16 90.5 88 52.3
CiPaw.12G118800 Carya illinoinensis HOM05D003240 ORTHO05D009426 1.3e-16 90.1 86 52.3
Haze_09435 Corylus avellana HOM05D003240 ORTHO05D009426 1.7e-16 89.7 67 61.2
Nn1g06519 Nelumbo nucifera HOM05D003240 ORTHO05D009426 1.7e-16 89.7 68 61.8
Potri.001G399200 Populus trichocarpa HOM05D003240 ORTHO05D009426 2.3e-16 89.4 65 61.5
Gohir.A04G031760 Gossypium hirsutum HOM05D003240 ORTHO05D009426 3.0e-16 89.0 81 54.3
Gohir.A04G031920 Gossypium hirsutum HOM05D003240 ORTHO05D009426 3.0e-16 89.0 81 54.3
Gohir.D05G352600 Gossypium hirsutum HOM05D003240 ORTHO05D009426 3.0e-16 89.0 81 54.3
Gohir.D05G352700 Gossypium hirsutum HOM05D003240 ORTHO05D009426 3.0e-16 89.0 81 54.3
Hma1.2p1_0458F.1_g157060 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 3.0e-16 89.0 89 50.6
DCAR_017136 Daucus carota HOM05D003240 ORTHO05D009426 5.1e-16 88.2 67 64.2
Lj3g0021284 Lotus japonicus HOM05D003240 ORTHO05D009426 5.1e-16 88.2 62 64.5
Manes.15G087500 Manihot esculenta HOM05D003240 ORTHO05D009426 5.1e-16 88.2 68 54.4
Gorai.009G385100 Gossypium raimondii HOM05D003240 ORTHO05D009426 6.6e-16 87.8 88 50.0
Haze_09433 Corylus avellana HOM05D003240 ORTHO05D009426 8.7e-16 87.4 67 58.2
Gorai.009G384700 Gossypium raimondii HOM05D003240 ORTHO05D009426 8.7e-16 87.4 81 53.1
Gorai.009G384900 Gossypium raimondii HOM05D003240 ORTHO05D009426 8.7e-16 87.4 81 53.1
Potri.011G118600 Populus trichocarpa HOM05D003240 ORTHO05D009426 8.7e-16 87.4 68 60.3
RcHm_v2.0_Chr5g0033251 Rosa chinensis HOM05D003240 ORTHO05D009426 8.7e-16 87.4 82 51.2
CAN.G162.53 Capsicum annuum HOM05D003240 ORTHO05D009426 1.1e-15 87.0 82 51.2
FvH4_3g19820 Fragaria vesca HOM05D003240 ORTHO05D009426 1.1e-15 87.0 81 48.1
Gorai.009G385000 Gossypium raimondii HOM05D003240 ORTHO05D009426 1.5e-15 86.7 73 57.5
SGA_v2.0_scaffold73G24260 Striga asiatica HOM05D003240 ORTHO05D009426 1.5e-15 86.7 66 65.2
Thecc.07G091300 Theobroma cacao HOM05D003240 ORTHO05D009426 1.5e-15 86.7 81 50.6
Nitab4.5_0001241g0070 Nicotiana tabacum HOM05D003240 ORTHO05D009426 1.9e-15 86.3 78 50.0
FAN25G3490 Fragaria x ananassa HOM05D003240 ORTHO05D009426 3.3e-15 85.5 67 55.2
Hma1.2p1_0898F.1_g234470 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 3.3e-15 85.5 63 63.5
Ciclev10010456m.g Citrus clementina HOM05D003240 ORTHO05D009426 4.3e-15 85.1 63 57.1
Medtr2g085370 Medicago truncatula HOM05D003240 ORTHO05D009426 4.3e-15 85.1 74 54.1
Sabra16G0261800 Salix brachista HOM05D003240 ORTHO05D009426 4.3e-15 85.1 65 56.9
Nitab4.5_0001336g0090 Nicotiana tabacum HOM05D003240 ORTHO05D009426 7.3e-15 84.3 78 51.3
Prupe.4G180300 Prunus persica HOM05D003240 ORTHO05D009426 7.3e-15 84.3 64 56.2
DCAR_013111 Daucus carota HOM05D003240 ORTHO05D009426 9.6e-15 84.0 69 60.9
Gohir.D05G352500 Gossypium hirsutum HOM05D003240 ORTHO05D009426 9.6e-15 84.0 80 52.5
FAN16G0971 Fragaria x ananassa HOM05D003240 ORTHO05D009426 1.3e-14 83.6 85 44.7
Glyma.12G225100 Glycine max HOM05D003240 ORTHO05D009426 1.3e-14 83.6 62 62.9
Gohir.A04G032100 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.3e-14 83.6 80 52.5
Gorai.009G384600 Gossypium raimondii HOM05D003240 ORTHO05D009426 1.3e-14 83.6 80 52.5
Dinv14922 Davidia involucrata HOM05D003240 ORTHO05D009426 1.6e-14 83.2 79 55.7
Phvul.005G072700 Phaseolus vulgaris HOM05D003240 ORTHO05D009426 1.6e-14 83.2 62 61.3
VMungo1080G0324 Vigna mungo HOM05D003240 ORTHO05D009426 2.1e-14 82.8 62 61.3
FAN21G1097 Fragaria x ananassa HOM05D003240 ORTHO05D009426 2.8e-14 82.4 67 53.7
Gohir.A04G032000 Gossypium hirsutum HOM05D003240 ORTHO05D009426 3.6e-14 82.0 81 51.9
COL.COLO4_27180 Corchorus olitorius HOM05D003240 ORTHO05D009426 4.8e-14 81.6 83 44.6
CSS0038111 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 8.1e-14 80.9 63 60.3
CSS0044584 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 1.1e-13 80.5 63 60.3
Cfa020576 Carpinus fangiana HOM05D003240 ORTHO05D009426 1.1e-13 80.5 59 62.7
Sabra11G0103500 Salix brachista HOM05D003240 ORTHO05D009426 1.1e-13 80.5 66 56.1
TPR.G38961 Trifolium pratense HOM05D003240 ORTHO05D009426 1.1e-13 80.5 59 61.0
Prupe.4G180400 Prunus persica HOM05D003240 ORTHO05D009426 1.4e-13 80.1 69 55.1
CARHR043350 Cardamine hirsuta HOM05D003240 ORTHO05D009426 1.8e-13 79.7 56 58.9
Aa31LG10G2000 Aethionema arabicum HOM05D003240 ORTHO05D009426 3.1e-13 79.0 56 60.7
Hma1.2p1_0458F.1_g157080 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 3.1e-13 79.0 64 57.8
Hma1.2p1_0458F.1_g157090 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 3.1e-13 79.0 64 57.8
A06p01190 Brassica napus HOM05D003240 ORTHO05D009426 4.0e-13 78.6 97 42.3
BraA06t23346Z Brassica rapa HOM05D003240 ORTHO05D009426 4.0e-13 78.6 97 42.3
CANSAT56G1752 Cannabis sativa HOM05D003240 ORTHO05D009426 4.0e-13 78.6 64 59.4
Sp1g39680 Schrenkiella parvula HOM05D003240 ORTHO05D009426 4.0e-13 78.6 56 57.1
BcaC08g43498 Brassica carinata HOM05D003240 ORTHO05D009426 5.3e-13 78.2 97 42.3
C06p08830 Brassica napus HOM05D003240 ORTHO05D009426 5.3e-13 78.2 97 42.3
BolC6t35961H Brassica oleracea HOM05D003240 ORTHO05D017503 5.3e-13 78.2 97 42.3
AT1G53130 Arabidopsis thaliana HOM05D003240 ORTHO05D009426 6.9e-13 77.8 56 60.7
Thhalv10022293m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 6.9e-13 77.8 56 57.1
BcaB07g33356 Brassica carinata HOM05D003240 ORTHO05D009426 9.0e-13 77.4 56 58.9
Carub.0001s4229 Capsella rubella HOM05D003240 ORTHO05D009426 9.0e-13 77.4 56 58.9
Thhalv10012399m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 9.0e-13 77.4 56 58.9
Nn4g25258 Nelumbo nucifera HOM05D003240 ORTHO05D009426 9.0e-13 77.4 68 57.4
AL1G61490 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 1.5e-12 76.6 56 58.9
Sp3g13510 Schrenkiella parvula HOM05D003240 ORTHO05D009426 2.0e-12 76.3 56 55.4
Cfa020578 Carpinus fangiana HOM05D003240 ORTHO05D009426 3.4e-12 75.5 57 56.1
Lalb_Chr03g0042631 Lupinus albus HOM05D003240 ORTHO05D009426 3.4e-12 75.5 59 59.3
Medtr2g085360 Medicago truncatula HOM05D003240 ORTHO05D009426 5.8e-12 74.7 65 50.8
AL3G27700 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 7.6e-12 74.3 56 53.6
Carub.0003s1496 Capsella rubella HOM05D003240 ORTHO05D009426 7.6e-12 74.3 56 53.6
Sopen07g031280 Solanum pennellii HOM05D003240 ORTHO05D009426 7.6e-12 74.3 51 60.8
BcaB04g20937 Brassica carinata HOM05D000882 ORTHO05D009426 1.3e-11 73.6 57 52.6
Lj3g0010365 Lotus japonicus HOM05D003240 ORTHO05D009426 1.3e-11 73.6 83 44.6
PGSC0003DMG400012465 Solanum tuberosum HOM05D003240 ORTHO05D009426 2.2e-11 72.8 51 60.8
TPR.G39028 Trifolium pratense HOM05D003240 ORTHO05D009426 2.9e-11 72.4 65 49.2
Cc05_g11970 Coffea canephora HOM05D003240 ORTHO05D009426 3.8e-11 72.0 62 56.5
THA.LOC104818082 Tarenaya hassleriana HOM05D003240 ORTHO05D009426 6.4e-11 71.2 56 51.8
BcaNung07375 Brassica carinata HOM05D003240 ORTHO05D009426 8.4e-11 70.9 56 50.0
Migut.M00801 Erythranthe guttata HOM05D003240 ORTHO05D009426 1.1e-10 70.5 69 52.2
Glyma.13G276200 Glycine max HOM05D003240 ORTHO05D009426 1.1e-10 70.5 55 60.0
Rhsim06G0199500 Rhododendron simsii HOM05D003240 ORTHO05D009426 1.1e-10 70.5 67 52.2
HPP92_020058 Vanilla planifolia HOM05D003240 ORTHO05D009426 1.4e-10 70.1 75 52.0
BcaC09g48486 Brassica carinata HOM05D003240 ORTHO05D009426 7.1e-10 67.8 56 48.2
Nn1g04123 Nelumbo nucifera HOM05D003240 ORTHO05D009426 1.6e-09 66.6 69 47.8
PSO675G7736 Papaver somniferum HOM05D003240 ORTHO05D009426 2.7e-09 65.9 67 43.3
PSO541G3864 Papaver somniferum HOM05D003240 ORTHO05D009426 3.5e-09 65.5 67 43.3
Lj6C73T0 Lonicera japonica HOM05D002014 ORTHO05D001958 8.7e-08 60.8 62 50.0
Aqoxy4G01492 Aquilegia oxysepala HOM05D002014 ORTHO05D001958 1.9e-07 59.7 66 47.0
Aqoxy3G01943 Aquilegia oxysepala HOM05D002014 ORTHO05D001958 2.5e-07 59.3 73 43.8
Aqoxy4G01347 Aquilegia oxysepala HOM05D002014 ORTHO05D001958 2.5e-07 59.3 76 40.8
PGSC0003DMG400021488 Solanum tuberosum HOM05D002014 ORTHO05D001958 2.5e-07 59.3 77 41.6
TAR626G0649 Trochodendron aralioides HOM05D002014 ORTHO05D001958 2.5e-07 59.3 65 44.6
Potri.011G008932 Populus trichocarpa HOM05D002014 ORTHO05D001958 3.3e-07 58.9 65 44.6
Potri.004G007100 Populus trichocarpa HOM05D002014 ORTHO05D001958 4.3e-07 58.5 65 44.6
Dinv13928 Davidia involucrata HOM05D002014 ORTHO05D001958 5.6e-07 58.2 65 46.2
FvH4_3g01660 Fragaria vesca HOM05D002014 ORTHO05D001958 5.6e-07 58.2 63 44.4
Sabra10G0176000 Salix brachista HOM05D002014 ORTHO05D001958 5.6e-07 58.2 76 44.7
Sabra10G0176400 Salix brachista HOM05D002014 ORTHO05D001958 5.6e-07 58.2 76 44.7
Oeu016058.1 Olea europaea HOM05D002014 ORTHO05D001958 7.3e-07 57.8 74 44.6
Potri.010G228100 Populus trichocarpa HOM05D002014 ORTHO05D001958 7.3e-07 57.8 78 42.3
Aqoxy1G03430 Aquilegia oxysepala HOM05D002014 ORTHO05D001958 9.6e-07 57.4 63 49.2
Aqoxy3G01944 Aquilegia oxysepala HOM05D002014 ORTHO05D001958 9.6e-07 57.4 63 49.2
Sabra04G0003800 Salix brachista HOM05D002014 ORTHO05D001958 1.3e-06 57.0 65 43.1
Aqoxy4G01491 Aquilegia oxysepala HOM05D002014 ORTHO05D001958 1.6e-06 56.6 65 46.2
Lsat_1_v5_gn_7_15460 Lactuca sativa HOM05D002014 ORTHO05D001958 1.6e-06 56.6 92 35.9
Nn1g07226 Nelumbo nucifera HOM05D002014 ORTHO05D001958 1.6e-06 56.6 95 36.8
QL05p072432 Quercus lobata HOM05D002014 ORTHO05D001958 1.6e-06 56.6 70 44.3
QL05p072457 Quercus lobata HOM05D002014 ORTHO05D001958 1.6e-06 56.6 70 44.3
QL12p029974 Quercus lobata HOM05D002014 ORTHO05D001958 1.6e-06 56.6 70 44.3
Solyc02g036220.1 Solanum lycopersicum HOM05D002014 ORTHO05D001958 1.6e-06 56.6 74 41.9
Aqoxy4G01348 Aquilegia oxysepala HOM05D002014 ORTHO05D001958 2.1e-06 56.2 66 47.0
Haze_06834 Corylus avellana HOM05D002014 ORTHO05D001958 2.1e-06 56.2 85 31.8
FAN25G0379 Fragaria x ananassa HOM05D002014 ORTHO05D001958 2.1e-06 56.2 61 45.9
Actinidia26893 Actinidia chinensis HOM05D000131 ORTHO05D000086 2.8e-06 55.8 65 41.5
COL.COLO4_31812 Corchorus olitorius HOM05D002014 ORTHO05D001958 2.8e-06 55.8 77 40.3
RcHm_v2.0_Chr5g0002461 Rosa chinensis HOM05D002014 ORTHO05D001958 2.8e-06 55.8 82 41.5
Sabra04G0004000 Salix brachista HOM05D002014 ORTHO05D001958 2.8e-06 55.8 65 43.1
Sopen02g011600 Solanum pennellii HOM05D002014 ORTHO05D001958 2.8e-06 55.8 64 43.8
unitig_37.g12571 Utricularia gibba HOM05D003240 ORTHO05D009426 2.8e-06 55.8 91 35.2
Lj6C71T2 Lonicera japonica HOM05D002014 ORTHO05D001958 3.6e-06 55.5 62 45.2
Lj6C72G5 Lonicera japonica HOM05D002014 ORTHO05D001958 3.6e-06 55.5 62 45.2
Lj6C73T1 Lonicera japonica HOM05D002014 ORTHO05D001958 3.6e-06 55.5 62 45.2
Lj6C74T0 Lonicera japonica HOM05D002014 ORTHO05D001958 3.6e-06 55.5 62 45.2
Lj6C9T0 Lonicera japonica HOM05D002014 ORTHO05D001958 3.6e-06 55.5 62 45.2
Solyc02g036240.1 Solanum lycopersicum HOM05D002014 ORTHO05D001958 3.6e-06 55.5 64 43.8
CiPaw.10G073600 Carya illinoinensis HOM05D002014 ORTHO05D001958 4.8e-06 55.1 65 41.5
FvH4_2g01120 Fragaria vesca HOM05D002014 ORTHO05D001958 4.8e-06 55.1 65 44.6
FAN21G0073 Fragaria x ananassa HOM05D002014 ORTHO05D001958 4.8e-06 55.1 83 39.8
FAN25G1699 Fragaria x ananassa HOM05D002014 ORTHO05D001958 4.8e-06 55.1 83 39.8
Sabra04G0003900 Salix brachista HOM05D002014 ORTHO05D001958 4.8e-06 55.1 65 43.1
Aqoxy1G03432 Aquilegia oxysepala HOM05D002014 ORTHO05D001958 6.2e-06 54.7 63 47.6
Potri.004G006900 Populus trichocarpa HOM05D002014 ORTHO05D001958 6.2e-06 54.7 61 44.3
RcHm_v2.0_Chr4g0430691 Rosa chinensis HOM05D002014 ORTHO05D001958 6.2e-06 54.7 83 39.8
RcHm_v2.0_Chr5g0002451 Rosa chinensis HOM05D002014 ORTHO05D001958 6.2e-06 54.7 83 39.8
Solyc02g036180.1 Solanum lycopersicum HOM05D002014 ORTHO05D001958 6.2e-06 54.7 64 43.8
TWI63G0638 Tripterygium wilfordii HOM05D002014 ORTHO05D001958 6.2e-06 54.7 89 38.2
Nn1g07227 Nelumbo nucifera HOM05D002014 ORTHO05D001958 8.1e-06 54.3 66 47.0
RcHm_v2.0_Chr5g0002441 Rosa chinensis HOM05D002014 ORTHO05D001958 8.1e-06 54.3 60 46.7
Thecc.06G225900 Theobroma cacao HOM05D002014 ORTHO05D001958 8.1e-06 54.3 66 47.0
TAR624G0852 Trochodendron aralioides HOM05D002014 ORTHO05D001958 8.1e-06 54.3 65 43.1


User provided reference genes

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