Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0737G144 Amborella trichopoda HOM05D004671 ORTHO05D005638 7.6e-289 996.5 516 100.0
TAR629G1771 Trochodendron aralioides HOM05D004671 ORTHO05D005638 1.0e-123 448.0 534 48.1
GSVIVG01028933001 Vitis vinifera HOM05D004671 ORTHO05D005638 2.7e-121 439.9 534 47.4
Nn3g16880 Nelumbo nucifera HOM05D004671 ORTHO05D005638 1.8e-120 437.2 511 48.5
Dinv24388 Davidia involucrata HOM05D004671 ORTHO05D005638 7.0e-117 425.2 532 45.9
Aqoxy3G03421 Aquilegia oxysepala HOM05D004671 ORTHO05D005638 1.9e-114 417.2 532 46.1
Mapoly0133s0004 Marchantia polymorpha HOM05D004671 ORTHO05D005638 1.6e-108 397.5 554 42.4
Thecc.03G178300 Theobroma cacao HOM05D004671 ORTHO05D005638 1.3e-107 394.4 534 45.3
Duzib205G1877 Durio zibethinus HOM05D004671 ORTHO05D005638 6.5e-107 392.1 558 43.9
Cfa022980 Carpinus fangiana HOM05D004671 ORTHO05D005638 2.5e-106 390.2 530 43.2
Cfa002753 Carpinus fangiana HOM05D004671 ORTHO05D005638 3.2e-106 389.8 536 43.1
Ciclev10004721m.g Citrus clementina HOM05D004671 ORTHO05D005638 4.2e-106 389.4 532 44.4
COL.COLO4_14329 Corchorus olitorius HOM05D004671 ORTHO05D005638 7.2e-106 388.7 535 45.2
CiPaw.03G107600 Carya illinoinensis HOM05D004671 ORTHO05D005638 1.0e-104 384.8 523 43.4
Gorai.006G048800 Gossypium raimondii HOM05D004671 ORTHO05D005638 1.0e-104 384.8 533 45.0
Gohir.A09G041700 Gossypium hirsutum HOM05D004671 ORTHO05D005638 1.4e-104 384.4 533 44.8
vmacro09835 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 1.4e-104 384.4 561 41.2
Gohir.D09G042500 Gossypium hirsutum HOM05D004671 ORTHO05D005638 6.7e-104 382.1 533 44.8
CANSAT21G1295 Cannabis sativa HOM05D004671 ORTHO05D005638 3.3e-103 379.8 534 44.0
PSO017G5643 Papaver somniferum HOM05D004671 ORTHO05D005638 4.4e-103 379.4 534 42.7
CANSAT21G1725 Cannabis sativa HOM05D004671 ORTHO05D005638 7.5e-103 378.6 534 43.6
Cpa.g.sc107.62 Carica papaya HOM05D004671 ORTHO05D005638 9.7e-103 378.3 553 42.5
Cc02_g02840 Coffea canephora HOM05D004671 ORTHO05D005638 1.7e-102 377.5 532 41.9
DCAR_015049 Daucus carota HOM05D004671 ORTHO05D005638 2.2e-102 377.1 526 43.5
PSO063G7539 Papaver somniferum HOM05D004671 ORTHO05D005638 6.3e-102 375.6 534 42.5
DCAR_010301 Daucus carota HOM05D004671 ORTHO05D005638 8.3e-102 375.2 526 43.3
Eucgr.K00269 Eucalyptus grandis HOM05D004671 ORTHO05D005638 3.1e-101 373.2 517 42.6
Atru.chr1.442 Acer truncatum HOM05D004671 ORTHO05D005638 7.0e-101 372.1 527 42.7
Manes.14G025200 Manihot esculenta HOM05D004671 ORTHO05D005638 7.0e-101 372.1 521 42.0
GSVIVG01017918001 Vitis vinifera HOM05D004671 ORTHO05D005638 1.2e-100 371.3 526 42.6
Nitab4.5_0001951g0070 Nicotiana tabacum HOM05D004671 ORTHO05D005638 2.7e-100 370.2 545 42.2
vmacro21316 Vaccinium macrocarpon HOM05D004671 ORTHO05D005638 1.0e-99 368.2 525 43.0
PGR142G1152 Punica granatum HOM05D004671 ORTHO05D005638 1.3e-99 367.9 523 42.4
CAN.G208.79 Capsicum annuum HOM05D004671 ORTHO05D005638 2.5e-98 363.6 530 41.3
MD07G1271200 Malus domestica HOM05D004671 ORTHO05D005638 2.5e-98 363.6 520 43.3
MSTRG.27109 Avicennia marina HOM05D004671 ORTHO05D005638 4.2e-98 362.8 532 41.7
RcHm_v2.0_Chr1g0377571 Rosa chinensis HOM05D004671 ORTHO05D005638 4.2e-98 362.8 548 41.8
FvH4_7g29570 Fragaria vesca HOM05D004671 ORTHO05D005638 9.4e-98 361.7 540 43.1
Rhsim09G0198100 Rhododendron simsii HOM05D004671 ORTHO05D005638 2.3e-96 357.1 502 43.8
Pp3c16_7220 Physcomitrium patens HOM05D004671 ORTHO05D005638 4.0e-96 356.3 563 40.1
AagrBONN_evm.TU.Sc2ySwM_344.423 Anthoceros agrestis HOM05D004671 ORTHO05D005638 6.8e-96 355.5 557 39.7
FAN03G0738 Fragaria x ananassa HOM05D004671 ORTHO05D005638 8.8e-96 355.1 545 41.7
arahy.Tifrunner.gnm1.ann1.V0I5I8 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.2e-95 354.8 539 42.1
FAN01G2609 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.6e-95 353.6 543 41.8
FAN06G5094 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.6e-95 353.6 547 42.2
MD01G1202100 Malus domestica HOM05D004671 ORTHO05D005638 2.6e-95 353.6 520 42.3
FAN10G4176 Fragaria x ananassa HOM05D004671 ORTHO05D005638 7.5e-95 352.1 543 41.6
TWI14G0685 Tripterygium wilfordii HOM05D004671 ORTHO05D005638 7.5e-95 352.1 531 41.1
Sc13g0008790 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.3e-94 351.3 532 40.6
Potri.015G144900 Populus trichocarpa HOM05D004671 ORTHO05D005638 1.7e-94 350.9 531 40.5
FAN10G3685 Fragaria x ananassa HOM05D004671 ORTHO05D005638 2.8e-94 350.1 543 41.4
Lalb_Chr06g0161161 Lupinus albus HOM05D004671 ORTHO05D005638 4.8e-94 349.4 536 42.0
HPP92_020192 Vanilla planifolia HOM05D004671 ORTHO05D005638 6.3e-94 349.0 532 41.5
Actinidia03123 Actinidia chinensis HOM05D004671 ORTHO05D005638 1.1e-93 348.2 446 45.3
FAN06G3892 Fragaria x ananassa HOM05D004671 ORTHO05D005638 1.1e-93 348.2 561 41.4
HanXRQChr15g0497081 Helianthus annuus HOM05D004671 ORTHO05D005638 1.1e-93 348.2 544 41.5
AUR62015967 Chenopodium quinoa HOM05D004671 ORTHO05D005638 2.4e-93 347.1 547 39.7
HanXRQChr10g0304161 Helianthus annuus HOM05D004671 ORTHO05D005638 2.4e-93 347.1 534 42.1
Glyma.10G234800 Glycine max HOM05D004671 ORTHO05D005638 3.1e-93 346.7 535 41.3
Haze_25041 Corylus avellana HOM05D004671 ORTHO05D005638 9.1e-93 345.1 519 41.8
HanXRQChr06g0163751 Helianthus annuus HOM05D004671 ORTHO05D005638 1.2e-92 344.7 534 41.4
SHI26612 Sapria himalayana HOM05D004671 ORTHO05D005638 4.5e-92 342.8 532 40.2
EL10Ac3g05622 Beta vulgaris HOM05D004671 ORTHO05D005638 5.9e-92 342.4 526 40.5
ClCG05G008100 Citrullus lanatus HOM05D004671 ORTHO05D005638 7.7e-92 342.0 536 41.4
CsaV3_3G017180 Cucumis sativus L. HOM05D004671 ORTHO05D005638 7.7e-92 342.0 523 41.3
Glyma.20G159500 Glycine max HOM05D004671 ORTHO05D005638 1.7e-91 340.9 537 40.8
ECA233G0868 Erigeron canadensis HOM05D004671 ORTHO05D005638 5.0e-91 339.3 539 39.5
Phvul.007G071300 Phaseolus vulgaris HOM05D004671 ORTHO05D005638 5.0e-91 339.3 534 40.6
Prupe.2G295500 Prunus persica HOM05D004671 ORTHO05D005638 6.6e-91 339.0 526 41.4
Lsat_1_v5_gn_8_8441 Lactuca sativa HOM05D004671 ORTHO05D005638 1.5e-90 337.8 536 40.5
Migut.K00770 Erythranthe guttata HOM05D004671 ORTHO05D005638 9.5e-90 335.1 522 40.0
VMungo0720G2100 Vigna mungo HOM05D004671 ORTHO05D005638 2.8e-89 333.6 532 40.6
Aa31LG4G17500 Aethionema arabicum HOM05D004671 ORTHO05D005638 1.0e-88 331.6 528 39.6
SalBow1G2445 Salvia bowleyana HOM05D004671 ORTHO05D005638 1.0e-88 331.6 526 37.3
arahy.Tifrunner.gnm1.ann1.U8RPI8 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.4e-88 331.3 610 37.7
THA.LOC104818634 Tarenaya hassleriana HOM05D004671 ORTHO05D005638 6.8e-88 328.9 526 38.4
SalBow1G5895 Salvia bowleyana HOM05D004671 ORTHO05D005638 3.4e-87 326.6 536 36.8
Ca_10754_v3 Cicer arietinum L. HOM05D004671 ORTHO05D005638 9.8e-87 325.1 539 40.3
Sabra15G0154400 Salix brachista HOM05D004671 ORTHO05D005638 2.2e-86 323.9 556 38.1
Thhalv10010290m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 6.3e-86 322.4 529 38.9
SGA_v2.0_scaffold60G21057 Striga asiatica HOM05D004671 ORTHO05D005638 8.3e-86 322.0 530 37.7
Sp5g13050 Schrenkiella parvula HOM05D004671 ORTHO05D005638 1.1e-85 321.6 529 38.8
Lsat_1_v5_gn_3_14041 Lactuca sativa HOM05D004671 ORTHO05D005638 7.0e-85 318.9 539 39.1
Psat6g198360 Pisum sativum HOM05D004671 ORTHO05D005638 2.7e-84 317.0 536 41.0
Lj5g0019412 Lotus japonicus HOM05D004671 ORTHO05D005638 3.5e-84 316.6 533 40.0
Medtr1g101100 Medicago truncatula HOM05D004671 ORTHO05D005638 5.9e-84 315.8 532 38.9
Hund04757 Selenicereus undatus HOM05D004671 ORTHO05D005638 1.0e-83 315.1 523 39.4
AL6G42740 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 1.7e-83 314.3 526 37.5
AL5G28510 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 1.1e-82 311.6 526 37.8
AT3G49000 Arabidopsis thaliana HOM05D004671 ORTHO05D005638 1.1e-82 311.6 528 37.3
RcHm_v2.0_Chr6g0258831 Rosa chinensis HOM05D004671 ORTHO05D005638 1.5e-82 311.2 529 39.3
BcaC01g02382 Brassica carinata HOM05D004671 ORTHO05D005638 5.6e-82 309.3 528 37.9
BolC3t18845H Brassica oleracea HOM05D004671 ORTHO05D005638 5.6e-82 309.3 528 37.9
TPR.G27007 Trifolium pratense HOM05D004671 ORTHO05D005638 5.6e-82 309.3 536 38.4
C03p65870 Brassica napus HOM05D004671 ORTHO05D005638 7.3e-82 308.9 528 37.9
Carub.0005s1517 Capsella rubella HOM05D004671 ORTHO05D005638 1.4e-80 304.7 542 37.8
BcaB02g09572 Brassica carinata HOM05D004671 ORTHO05D005638 5.2e-80 302.8 529 37.6
AUR62021173 Chenopodium quinoa HOM05D004671 ORTHO05D005638 1.9e-77 294.3 524 38.0
A06p28000 Brassica napus HOM05D004671 ORTHO05D005638 9.2e-77 292.0 528 36.6
Os01g0679000 Oryza sativa ssp. japonica HOM05D004671 ORTHO05D005638 1.2e-76 291.6 534 37.8
BraA06t25741Z Brassica rapa HOM05D004671 ORTHO05D005638 1.6e-76 291.2 528 36.4
Sc13g0008760 Simmondsia chinensis HOM05D004671 ORTHO05D005638 1.6e-76 291.2 511 38.2
Thhalv10003189m.g Eutrema salsugineum HOM05D004671 ORTHO05D005638 4.6e-76 289.7 522 35.6
CARHR157820 Cardamine hirsuta HOM05D004671 ORTHO05D005638 7.8e-76 288.9 529 35.7
Sed0007536 Sechium edule HOM05D004671 ORTHO05D005638 1.0e-75 288.5 447 41.6
CDE04G3622 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 3.0e-75 287.0 340 47.9
Ah.13g068640 Amaranthus hybridus HOM05D004671 ORTHO05D005638 6.6e-75 285.8 526 37.1
Zm00001eb160040 Zea mays HOM05D004671 ORTHO05D005638 9.5e-74 282.0 529 35.3
Haze_13677 Corylus avellana HOM05D004671 ORTHO05D005638 1.2e-73 281.6 696 32.0
Carub.0004s0531 Capsella rubella HOM05D004671 ORTHO05D005638 3.1e-72 276.9 534 34.5
unitig_37.g12531 Utricularia gibba HOM05D004671 ORTHO05D005638 1.5e-71 274.6 534 38.0
SMO143G0293 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 1.1e-69 268.5 497 38.8
Nitab4.5_0000080g0100 Nicotiana tabacum HOM05D004671 ORTHO05D005638 3.2e-69 266.9 547 35.8
Peaxi162Scf00848g00012 Petunia axillaris HOM05D004671 ORTHO05D005638 1.0e-67 261.9 383 41.5
SMO276G0042 Selaginella moellendorffii HOM05D004671 ORTHO05D005638 4.3e-66 256.5 443 37.9
Solyc06g036000.4 Solanum lycopersicum HOM05D004671 ORTHO05D005638 1.6e-65 254.6 383 41.3
Sed0027520 Sechium edule HOM05D004671 ORTHO05D005638 2.1e-65 254.2 418 39.2
MELO3C031814.2 Cucumis melo HOM05D004671 ORTHO05D005638 3.6e-65 253.4 475 38.9
Sc13g0008680 Simmondsia chinensis HOM05D004671 ORTHO05D005638 2.0e-63 247.7 467 37.3
Sopen06g011780 Solanum pennellii HOM05D004671 ORTHO05D005638 3.3e-58 230.3 332 41.6
QL09p013914 Quercus lobata HOM05D004671 ORTHO05D005638 4.4e-55 219.9 276 47.5
arahy.Tifrunner.gnm1.ann1.R5FQEP Arachis hypogaea HOM05D004671 ORTHO05D005638 3.8e-54 216.9 402 38.3
CSS0035516 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 1.2e-47 195.3 260 48.1
arahy.Tifrunner.gnm1.ann1.4LKL39 Arachis hypogaea HOM05D004671 ORTHO05D005638 1.1e-45 188.7 349 37.5
MD07G1271300 Malus domestica HOM05D004671 ORTHO05D005638 1.5e-42 178.3 269 37.9
Ah.13g076510 Amaranthus hybridus HOM05D004671 ORTHO05D007692 1.7e-38 164.9 342 34.2
Migut.K01220 Erythranthe guttata HOM05D004671 ORTHO05D005638 1.1e-37 162.2 267 38.2
Oeu004097.1 Olea europaea HOM05D004671 ORTHO05D005638 6.0e-36 156.4 220 42.3
CDE04G1371 Ceratophyllum demersum HOM05D004671 ORTHO05D005638 1.5e-34 151.8 158 50.0
Cre16.g673900 Chlamydomonas reinhardtii HOM05D004671 ORTHO05D005638 2.5e-34 151.0 653 24.7
MCO01G383 Micromonas commoda HOM05D004671 ORTHO05D005638 4.0e-32 143.7 533 25.3
CBR_g5701 Chara braunii HOM05D004671 ORTHO05D005638 3.5e-28 130.6 194 37.1
Oeu002719.1 Olea europaea HOM05D004671 ORTHO05D005638 4.6e-28 130.2 276 36.6
CBR_g5700 Chara braunii HOM05D004671 ORTHO05D005638 2.3e-27 127.9 172 41.3
HanXRQChr06g0163701 Helianthus annuus HOM05D001754 ORTHO05D005638 1.9e-26 124.8 336 31.0
CSS0016908 Camellia sinensis var. sinensis HOM05D004671 ORTHO05D005638 2.5e-26 124.4 144 45.1
Glyma.20G157700 Glycine max HOM05D004671 ORTHO05D005638 3.8e-22 110.5 156 41.7
Zm00001eb440850 Zea mays HOM05D004671 ORTHO05D005638 5.0e-22 110.2 159 43.4
BolC8t50021H Brassica oleracea HOM05D004671 ORTHO05D005638 3.2e-21 107.5 153 39.2
C08p23970 Brassica napus HOM05D004671 ORTHO05D005638 1.2e-20 105.5 153 39.2
CAN.G527.1 Capsicum annuum HOM05D004671 ORTHO05D005638 2.1e-20 104.8 234 35.5
BcaC07g39376 Brassica carinata HOM05D004671 ORTHO05D005638 4.3e-18 97.1 148 37.2
Glyma.12G162990 Glycine max HOM05D004671 ORTHO05D005638 4.3e-18 97.1 144 41.0
BcaB01g00761 Brassica carinata HOM05D004671 ORTHO05D005638 6.3e-17 93.2 214 30.4
AL5G14400 Arabidopsis lyrata HOM05D004671 ORTHO05D005638 2.5e-13 81.3 246 27.2
Peaxi162Scf00848g00015 Petunia axillaris HOM05D004671 ORTHO05D005638 5.5e-13 80.1 132 37.1
Cre11.g476376 Chlamydomonas reinhardtii HOM05D030013 ORTHO05D028799 1.0e-11 75.9 192 30.7
CBR_g26425 Chara braunii HOM05D004671 ORTHO05D005638 1.7e-09 68.6 97 41.2


User provided reference genes

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